Lstr034887.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
Zfa
Assembly
GCA_949128165.1
Location
OX421922.1:1300547-1331730[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00033 0.029 16.1 1.2 1 23 226 248 226 248 0.99
2 28 0.00033 0.029 16.1 1.2 1 23 257 279 257 279 0.99
3 28 0.00033 0.029 16.1 1.2 1 23 288 310 288 310 0.99
4 28 0.00033 0.029 16.1 1.2 1 23 319 341 319 341 0.99
5 28 0.00033 0.029 16.1 1.2 1 23 350 372 350 372 0.99
6 28 0.00033 0.029 16.1 1.2 1 23 381 403 381 403 0.99
7 28 0.00033 0.029 16.1 1.2 1 23 412 434 412 434 0.99
8 28 0.0019 0.17 13.7 2.6 1 23 443 465 443 465 0.98
9 28 0.16 14 7.7 0.9 1 23 472 494 472 494 0.97
10 28 1.1 95 5.0 0.3 1 19 498 516 498 521 0.87
11 28 0.00032 0.028 16.1 3.9 1 23 528 551 528 551 0.95
12 28 0.02 1.8 10.5 0.1 3 23 558 579 557 579 0.95
13 28 1.3e-05 0.0011 20.6 0.7 1 23 592 614 592 614 0.94
14 28 0.0017 0.15 13.8 1.2 1 22 620 641 620 645 0.93
15 28 0.00027 0.024 16.4 0.7 3 23 655 676 653 676 0.95
16 28 0.00063 0.056 15.2 0.7 1 23 682 705 682 705 0.97
17 28 2e-05 0.0018 19.9 0.5 1 23 714 736 714 736 0.98
18 28 0.0087 0.76 11.6 0.4 1 23 742 765 742 765 0.96
19 28 0.00023 0.02 16.6 2.6 1 23 976 998 976 998 0.98
20 28 0.59 52 5.9 0.3 1 23 1031 1054 1031 1054 0.87
21 28 0.00016 0.014 17.1 2.4 1 23 1061 1084 1061 1084 0.94
22 28 0.00014 0.012 17.2 0.1 2 23 1090 1112 1089 1112 0.95
23 28 0.00028 0.025 16.3 0.3 1 23 1125 1147 1125 1147 0.95
24 28 0.00043 0.037 15.7 1.5 1 22 1153 1174 1153 1178 0.94
25 28 0.00028 0.025 16.3 1.5 3 23 1188 1209 1186 1209 0.95
26 28 0.00043 0.038 15.7 0.2 1 23 1215 1238 1215 1238 0.97
27 28 5.3e-05 0.0046 18.6 0.1 1 23 1247 1269 1247 1269 0.98
28 28 0.2 18 7.3 0.1 1 23 1275 1298 1275 1298 0.92

Sequence Information

Coding Sequence
ATGGAGCAATCTCAAACGGGATTAAATCTATATTGTTTTGGGTGTTTGTCTCCTAAAGATGCCAAGTCGTTCTACTGCCTGAATTTGCAAAATTCTGTTTTGAAATCAGTTTTACAGGTTGAATGTCTATTCCTCTGCTACATGTGCAGGCGGGCATTGCAACAAGCAGAACTGTTTGTACAAAATGTGCAAACTAATCAGATTCTGCTTCAGAATCTACACAATATGGAAGACTCCACTCAACAAACAGCTCGGACTCAATCCCAAACACTGCACCAATTATCTTCAGTCTCTCTAGACATTATCACACTAGGACCTGAGTCCAATCAGAAAGAAAGGATTATGGTCTATGGCCATTCTGGGACGAAAGTTAAGCTAGAGATGATAGATGACACACctgaaaatgatgatgataataatgGTTGCCAGGAACCTTTTGTAAAAGAAGGCTCATACCCTCTGAAAGTATTATTGAAAGAAGAGACAGAGGTAATAAAAGTAGTTACAGATGATGATAGCCCTAAGAAAGTACCTAGAAAGTATAAGAAAAGGAAGGCTAAGAGGGGTAAAGAGGATGAAGATCAATACATAATAGAAACGGTAGAAATAACCCGCGAGCAATGTATGGAGGAGCGAGCGCGAGCGGCGCTCGACCAGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCTACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGCGGTACGTAGCCTCCACCCACAAGTGTGCGGATTGCGTCAAGGGGTTCAACTATAAGGACAGCTTCGACAAACATATGGAGAAGCATAGCCCGAGCAACGGTGATTTCGAATGTGAGGTGTGCAAACAGAGGATGAGTTCACAAGATAAACTGATCGGCCACAAGAAATACCACGAGAGGCGGTACCGTTGCCCCGTATGTGGCCTAACTCGAGCCAGCAGAGTGTTGGTTAAGGATCACTGCTCGGCCGCTCACTCGACCAAAGAGACGAGACATAGCTGTCCACACTGCGATAAGACTTTCAAACGGCGCCTGGCGTGGCGCAAGCACGTGTCGCGCGTGCACGGGCGGGCGCGCGCGCCGTGCCCGCTCTGCAGCAACACGTACGCCAACAAGGACGTGCTGCGCGCGCATATCAACctCCAACATCCAATAGAGGGCATTACGCCGCCAATAGCCAAGCCCCACGTCTGCCAAGACTGCGGTAAAGCGTTCAAGTCGCCCTCGCTGCTCAAGATACACAGCGTCAAGCATTCGCTCAACAGGGACTTCTACTGCGTCGAGTGTGACAAGAGTTTCAAATCAGCTACAATACTGAAACACCACCTGAAGACAGCGTCAGTTCATATCAGCTATAACGATTTACCtctAGCGTGTTCCCACTGCGGGAAACGGTTCGCGATCAAACGCGACCTTGAGCAGCACGTCAACCGCGTGCATCTCAACATCAAGCCGTTTCGATGCGACCACTGCGAGAAGGCGTACGTGAACGTGTGGTCGCTGAATGAGCACCGACGTCTCATACACGAGGGGTTCAAGCGCCCCCTGAAGTACCCCTGCCCCATGTGCGACAAGGTCTTCGATACGAACCAAGTCCTGAAAGACCACATCCACACGCACACCGGCGAGCGGCCCTACCAGTGCTCCCGCTGCCCTTCGCAGTTCCGCCAGGCCAGCACCCTCGGCACCCACGTCAAGCTGGTCCACCTGAAGCTGACCAGGAACGGCCGGCCCAAGGCCGCAGACCAGgTTGAATGTCTATTCCTCTGCTACCTTTGCAAGCGAGCCTGGCAACAAGCGGAGCTCTTCATGCAAAATGTTCAAAGTAACCAGATATTACTAGAGAATATACACAgtGTCGAGGATTCTACTGTTCTCTCAGTGCGGTCACAATCCCGGATACCGCACCAGCTATCCACAATATCTCTAGACGTAATAGAGTTAGGAACTAAGTCAACAGAAGAGGAGTCCTATTTTGTGTATGATCATCGGGGGCTTAAAGTCAAGCAGGAGATGAAGAAAGAGGCCGCAGCATTTGAggattatgatgatgataatggcGACACTGATTTCCAGGAGTCCTATGTaaaggaagaagaagactttCCTTTAAAGGAACTATTGAAGGAGGAGGTAATGATGATGGAAGTAGACCTGAAAAGCTTAAAGAAAAGCCTCAGGAAGGGGAAGTTAAAGAAAAAGAAGGTGAAGAAggatatagaaattaaaaaagaagacGAAGAGCTATGCGAAATAGAAACAGTCCACATAACCCGAGAGCAATGTCTAGAGGAGCGCGCGCGCATGACGTGCGACCAGCGGTACGTAGCCTCCGCCTTCAAGTGCACGGACTGCCTCAAGGGGTTCAACTATAAGGAGAGCTTCCTCAAACATATGGAGAAGCATAGCCAGAGCAATGGCGATTATGAATGCGACGTGTGTAAACAGAGGATGAGCACCGAAGACAAACTGCTTTGCCACAAGAAATACCACGAGAGgcGGTACCGCTGTCCCGTGTGCGGCTTAACGCGGATCAGTCGGCTGACGGTCAAAGATCACTACTCAGCCTTCCATTCGGCCAACCACTATCGGCATAGCTGCCCTCACTGCGCTAAATCTTTCAAACGGCAGGTGTCGTGGCGGAAACACATCGCGAACGTGCACGCGCGTGCGCGCGTCACCTGCGCGTACTGCGACAAAACTTACGCGAACAGGGACGTACTGAAGGCGCATATGATTGTTCGACATCCGACAGAAGTGTCAGCTGGCTCGGTGACCAAATCCCACGTGTGCCAAGACTGCGGCATGGCCTTCAAGGCCCCCTCGCAGCTAAAGATCCACAACATCAAACATTCGCTCACGAGGGATTATTACTGCGTTGAATGTGACAAGAGTTTCAAATCGGCGTCAATACTGAAACATCACCTGAAAACAGCGTCGACTCACGTCAGCTACACTGAGCTACCTCTGGCGTGCGAGCATTGCGACAAGCGGTTCGCGATCCGGCGCGACCTGCAGCGACACACCAACCGAGTGCATCTCAACATCAAACCCTTCCAGTGCGACCGCTGCGAGAAGGCGTACGTGAACGCGTGGTCCCTCAACGAGCACCGACGGCTTGTCCACGAGGGGTTCAAGCGCCCCCTGAAGTACCCCTGCCCCATGTGCGACAAGGTCTTCgaccGTAATCAAATCCTCAAAGGCCATATCCGCACGCACACCGGCGAGCGGCCCTACCAGTGCTCCCGCTGCCCTGCACAGTTCAGTCAGGCCAGCATACTGGGGACCCACGTCAAGCTAATACACCTCAAGCTGACCAGAGATGGGAGGCCTAAGGCTTTGACCAGCAAATAA
Protein Sequence
MEQSQTGLNLYCFGCLSPKDAKSFYCLNLQNSVLKSVLQVECLFLCYMCRRALQQAELFVQNVQTNQILLQNLHNMEDSTQQTARTQSQTLHQLSSVSLDIITLGPESNQKERIMVYGHSGTKVKLEMIDDTPENDDDNNGCQEPFVKEGSYPLKVLLKEETEVIKVVTDDDSPKKVPRKYKKRKAKRGKEDEDQYIIETVEITREQCMEERARAALDQRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTYKCADCVKGFNYKDSFDKHMEKHSPRYVASTHKCADCVKGFNYKDSFDKHMEKHSPSNGDFECEVCKQRMSSQDKLIGHKKYHERRYRCPVCGLTRASRVLVKDHCSAAHSTKETRHSCPHCDKTFKRRLAWRKHVSRVHGRARAPCPLCSNTYANKDVLRAHINLQHPIEGITPPIAKPHVCQDCGKAFKSPSLLKIHSVKHSLNRDFYCVECDKSFKSATILKHHLKTASVHISYNDLPLACSHCGKRFAIKRDLEQHVNRVHLNIKPFRCDHCEKAYVNVWSLNEHRRLIHEGFKRPLKYPCPMCDKVFDTNQVLKDHIHTHTGERPYQCSRCPSQFRQASTLGTHVKLVHLKLTRNGRPKAADQVECLFLCYLCKRAWQQAELFMQNVQSNQILLENIHSVEDSTVLSVRSQSRIPHQLSTISLDVIELGTKSTEEESYFVYDHRGLKVKQEMKKEAAAFEDYDDDNGDTDFQESYVKEEEDFPLKELLKEEVMMMEVDLKSLKKSLRKGKLKKKKVKKDIEIKKEDEELCEIETVHITREQCLEERARMTCDQRYVASAFKCTDCLKGFNYKESFLKHMEKHSQSNGDYECDVCKQRMSTEDKLLCHKKYHERRYRCPVCGLTRISRLTVKDHYSAFHSANHYRHSCPHCAKSFKRQVSWRKHIANVHARARVTCAYCDKTYANRDVLKAHMIVRHPTEVSAGSVTKSHVCQDCGMAFKAPSQLKIHNIKHSLTRDYYCVECDKSFKSASILKHHLKTASTHVSYTELPLACEHCDKRFAIRRDLQRHTNRVHLNIKPFQCDRCEKAYVNAWSLNEHRRLVHEGFKRPLKYPCPMCDKVFDRNQILKGHIRTHTGERPYQCSRCPAQFSQASILGTHVKLIHLKLTRDGRPKALTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-