Lstr038317.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:8104062-8115393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 44 0.085 7.5 8.5 0.0 1 23 97 120 97 120 0.93 2 44 0.48 42 6.2 0.0 2 23 147 169 146 169 0.95 3 44 0.0026 0.23 13.3 0.3 2 23 192 213 191 213 0.97 4 44 0.00041 0.036 15.8 0.2 1 23 217 239 217 239 0.98 5 44 0.18 16 7.5 4.3 1 21 244 264 244 267 0.96 6 44 0.42 37 6.3 1.0 2 23 275 297 274 297 0.93 7 44 0.00025 0.022 16.5 1.5 2 23 305 327 304 327 0.97 8 44 1.8e-05 0.0016 20.0 0.1 1 23 333 355 333 355 0.98 9 44 3.1e-06 0.00027 22.5 0.9 1 23 361 383 361 383 0.99 10 44 0.76 66 5.5 0.4 1 13 389 401 389 402 0.91 11 44 0.0022 0.19 13.5 0.2 1 23 478 501 478 501 0.95 12 44 0.025 2.2 10.2 0.9 5 23 530 549 528 549 0.95 13 44 0.0017 0.15 13.9 0.8 1 23 597 619 597 619 0.96 14 44 0.02 1.8 10.5 0.2 1 23 624 647 624 647 0.97 15 44 0.057 5 9.1 2.9 1 23 654 677 654 677 0.93 16 44 0.0089 0.78 11.6 0.1 1 23 729 752 729 752 0.93 17 44 0.03 2.6 9.9 1.5 2 23 778 800 777 800 0.96 18 44 6.2e-05 0.0055 18.4 0.1 1 23 848 870 848 870 0.98 19 44 0.0005 0.044 15.5 2.1 1 23 875 898 875 898 0.97 20 44 0.093 8.2 8.4 0.2 2 23 906 928 905 928 0.93 21 44 0.082 7.2 8.5 0.9 2 23 936 958 936 958 0.94 22 44 0.0046 0.4 12.5 1.8 1 23 964 986 964 986 0.98 23 44 1.5e-06 0.00013 23.5 0.6 1 23 992 1014 992 1014 0.99 24 44 9.2 8.1e+02 2.1 0.5 1 10 1019 1028 1019 1029 0.94 25 44 0.0033 0.29 13.0 0.7 1 23 1292 1315 1292 1315 0.97 26 44 2.3 2e+02 4.0 2.4 5 23 1341 1360 1339 1360 0.90 27 44 0.061 5.3 9.0 0.3 3 23 1384 1404 1383 1404 0.97 28 44 0.0058 0.51 12.2 0.3 1 23 1408 1430 1408 1430 0.96 29 44 0.0076 0.67 11.8 2.3 1 23 1435 1458 1435 1458 0.97 30 44 0.12 10 8.1 2.4 1 23 1465 1488 1465 1488 0.91 31 44 0.0005 0.044 15.5 0.7 2 23 1496 1518 1496 1518 0.96 32 44 0.00058 0.051 15.3 1.2 2 23 1525 1546 1525 1546 0.97 33 44 1.7e-05 0.0015 20.2 0.5 1 23 1552 1574 1552 1574 0.98 34 44 0.026 2.3 10.1 2.2 1 23 1637 1660 1637 1660 0.94 35 44 2.3 2e+02 4.0 2.4 5 23 1686 1705 1684 1705 0.90 36 44 0.061 5.3 9.0 0.3 3 23 1729 1749 1728 1749 0.97 37 44 0.0058 0.51 12.2 0.3 1 23 1753 1775 1753 1775 0.96 38 44 0.00086 0.075 14.8 0.6 1 23 1780 1803 1780 1803 0.98 39 44 0.46 40 6.2 2.2 1 23 1810 1833 1810 1833 0.82 40 44 0.0057 0.5 12.2 0.1 6 23 1845 1863 1843 1863 0.95 41 44 0.0014 0.12 14.2 0.5 3 23 1871 1891 1870 1891 0.96 42 44 0.00011 0.0099 17.6 2.0 1 23 1897 1919 1897 1919 0.98 43 44 0.0043 0.38 12.6 0.2 1 23 1985 2008 1985 2008 0.94 44 44 0.51 45 6.0 1.9 5 23 2034 2053 2032 2053 0.93
Sequence Information
- Coding Sequence
- ATGGAACATCACATTACGTCGCCAGGTGATACACCAGTCATAAAGGTGGAACCTCCCCTTACGTCGACTAGTGCAAATAAACTGCCCATAATTATATCGACTAACTCCCTTGAGCAAAGGACTACTATAACCAAAGTACAAGCCccgacagaaaaaggtataaTTAAAAGCTTAGAACATAAGATTGAAACGAAACGTGGAACAGAAATGATTAAAAGTCAGCATAATTTAGGAATCGTTCTGCGTCATTCTAACGCGACGCCGCTTCTCGGCCAACGCGGTGCTGGCTACGCGTGCTACTATTGCCCGATACAGTACCCCGATCCCGCCGATGTCAAGAGACACACTCTAGAATCCCACAATGATTTAAAGAGAAATCCTTCGCTGCCACCGTTAAGACTTGATAACTATTCAGTAAAAATCGATATCACAAACTTAATatgcaaagtttgttcaacaaGTTACGCTATACTTATCGACTTAATGGACCATTTGCGGCTTGACCATGATCAACCCATTCACACTGACATCAAAGATCTCTTTTTGCCTTTTATATTTGACAGCGATACACTTAAATGTGCATTATGCGATACAGAATTTACGACTTTCAGGATGTTAGTAGAACATATGAACATACATTACAGACATTACATATGTGACATTTGCGATATAGGCTTCATCACCAAAGTTGGCCTGCGGACACACAAGAAAAGTCACGAGGAAGGAGATTACCAGTGCGACCAATGTCACAAATTGTACAATTCATTGAACAAGTTAAATATGCACATTCGCTGCGTCCACTTTGGGCAAGACAAGAGAAACAAATGTGCATATTGCGACGAAAAATTCTCTAGTATAATAACGAAGAATAATCACCAATTCAAAGTGCACGGTGTTGCTCTCAAGACAGTCAAGTGCAAGGCGTGTGATAAAACCTTTCGAAGCAACCAAGGTCTAAGAGAACACTATAAGACATATCATTTGCAGATAAAGAAATTCAAGTGTTCTGATTGTGATATGGCGTTCCCTAACAACGGTGAATTAACAGACCACATGGTGAAACACACGGGCGCTCGTGATTTCAAATGCGAAATTTGCCAGAAAGCGTACGGAAGAAAATCGACTTTGGTGCAGCATATGAGGAGCCATAATAATGACAGAAGACACAAGTGCAACCACTGTCCGTTGGCGTTTGTCCAAAAATACATCCCACAAAAAACACAAGTCTTAAAGATGAAACGTCCCGACACGGCGTCCGATGCTAAAATCGTCATATCAAGTTCGTCAACTGTCTATCAATCTTCGGCATCAATGTCTGTAGAACAGAGAACGGCTAAACATACAAAAGAAAggactaaaaataaacaaaatttagaaATCATCTTGCGACATTCCAACGCAACGCCTATACGCggtaaagaagaagaaggataTGTCTGCTTCTTCTGCCCGAGGGAGTTCCCAGATCCGAACGATCTTAAAATACACACTCAAGAGAACcacaaagatttaaaaaaagatgctTCTCAGCGAACGCCAAATCTAGATCATTATACAGTTAAACTTGACGTGACGGATTTGACATGCCAATGTTTTAAAAGTTTCGATAAACTGTCCGATTTAATGAACCACTTGCGAGTTGACCACGGTCAACCCATTCAAACTGAGGTCAAAGATCACGTGTTACCTTTTCGATTCCACAATGGAAACCTAAACTGCGCAATATGCGACACGGAATTCGTATCTTTTAAAGTTGGAATAGAACATATGAGCAAACATTACAGAAATCATATTTGCGACTTGTGCGACGCAGGCTTCGTTACCAAAGCTAGCCTGCGCAATCACAAAacaacgcataataagggaaGTTACACGTGCGACCAATGCCTCCAAGGCTATAGTACTATAGGGAAATTGAATGATCACATTCGCTACGCTCACCGGGGCCAAAATAACGGCCACGAATGCTCCCACTGCGGCGAAACATTCTCGAGCACTCCTCTTCGGAATTATCATCTATCAAAAGTTCATGGAATTAGTCCTAGGGTAGCTAAGTCTTCACAAGTTAGCCCAATATCAGCTAAAAAAGTTAGAACTAAAGAAATGGCTAAACATAAGCAGAATTTAGAGTTAATTTTACGCCATTCAAACGCGACGCCCATACGGGGCCACAGCGGCATCGGCTATGTGTGCTTTTTCTGTCCGATGGAGTTCCCCGATCCAGGCGAACTCAAGACTCACACTCTTGACTCTCACATAGATTTGAAACACGAATTACAAAACCCCCTAAAACGCGGTCACTTTGCAGTCAAAATCGACATTACAAATTTAACATGCAAATTTTGTTTAACGAGTTACGATCAACTTACTGACTTAATGCACCATTTACGAGTTGAACACGACCAACCAATTCGCACTGACGTAAAAGATTACTTCTTACCTTTTAGATTCGACACCGATGCCCTAAAATGCGCAATGTGTGAATCAGAGTTCACcgcttttaaaatattaatagaaCATATGAACAGGCATTACCGAAATTACATTTGCGAAATTTGTGACGCAGGCTTCGTTACAAGAGCTAGCCTGCAAGTACACAGAAAGACTCATAACAGCGGGGATTACCCATGCGCACATTGTCATCAAGTATATAATACTTTGATGAATTTGACGTCCCACATTCGCTACGCTCACCAAGGACAAGTTAAGAGGAACAAATGTGCATATTGCGGCGAAAAATTCATCAGTTTAGAGGCGAAGAACAATCATCTCGTAAAAGAGCACGGAGTTGCTCCCACGGTTGCCAAGTGTACGGCGTGTGACAGAACTTACGGCAACTACAAGAGCTTAAGAATGCACTATAAAGCTTACCATATGATGATTAAGAAATTCAAGTGTTCAGTTTGTAACATGGATTTTGCAAGAGGCTGCGAATTAAAAAACCATATGGTAAAACACACCGGTGCCCGTGATTATCAATGCGATGTTTGTGAGAAAGCGTACGGAAGGAAGTCCACGTTGAGGCAGCATATGAGGGTACACAGCGATGATAGGTACAAGTGCCAACACTGCTCGATGGTGTTCCTTCAAATAAGCGTTCGACAACAAACACCATTATTAAAAGATACTTACATCGAGCCGTCCAGTGACAAAACACTGCCTGTTATCATACAAAAATCCTCTCTTGCTCATTTGACACCAAAAGCTGTAGAACACAAAAATAAAGCGCCAAACGTGATAGCTAAACATATGCACAACTTGGAAGTCATCATGCGCTATTCCAATGCTACACCTATACAAAATCACAATGACATCGGCTATACTTGTTTCTTCTGTCCGATGGAGTTCCCCGACCCGGGCGTTCGGCATCAAACACCATTATTAAAAGATACTTACATCAAGCCGTCCTGGGACAAAACACTGCCTGATATGATACCAACAACGTCTCTTGCTTATTTGACACCTAAAGCTGTAGGACACAAAAATACTACCATAAGCTCTAAAAGTAACTTAAACCCGTTAAACAAAGCGTCAAACGTGACAGCTAAACATCTGCACAACTTGGAAGTCATCATGCGCTATTCCAATGCTACACCTATACAGAATCACAATGATATCGGCTATACTTGTTTCTTCTGTCCGATGGAGTTCCCCGACCCGGATGATCCAAATGACACACCAGACGACTTTATGGTAGAAACTCTCGACACGTCATCAGATGATGAAAAACTGCCTATTAAGATACCAGCAATATCCCTAAATCGACCTTCATTACCCATAACCGTAGCAGAAGAacctaaacataaatataatttaaaaatcatcTTACGGCATTCCAATGCCACGCCTATACGTGCTAACAACGACATCGGCTATGTATGCTTCTTCTGCCCAACGACGTTTCCCGAGCCGAAAGATCTTAAGACACACACTCTAAAGTCTCATGGAGATTTCAAGCACGACCCGTCTCTAAGACCTGATTACTATCCAGTAAGATTGGACATCACGAATTTGACATGCCAGTGTTCCAAACACTTCGATCAATTGACTGACTTAATGCACCACTTGGAAGCTGACCATAGTCAACTTATTCGAACCGACGTCAAAAATTACTTATTACCTTTTCGATTCGACAGCGATAAAGTGTTTTGCGCATTGTGCGATATGGTATTCACATCTTTCAGAAATGCAATAGAGCATATGAACCAGCATTACCGTAATCACATTTGTGACGCTTGTGACGCAGGCTTTGTCACTAATGCTGGCCTGCGATCACACAAAAGAACTCACGTCAGTGGAGAGTACCAATGCGAACAATGCGATCAAGTCTGCAATACTAAGTTGAAGTTGAGTAATCACGTTCGTTATATCCACCAAGGTATTGTTAATAGGCATAAATGTGCCCATTGCGGCAAACAGTTCGCGAGCTTAATAATGAAGAATAAACATGTAGTCAAAGAGCATGGAGGTGCTCCCACAGAAGCGAAGTGTATGACATGTGATGAAGTATTCAGTAGCAAGGCTAGTCTTCAAACACATGTTACCACACAACATTTGATGATAAAAAAACCTAAGTGCTCAATTTGTAATATGGAGTTTTCAAAAACCTACGATTTAATGAAGCATATGGTGAAACACACCGGTGCTCGCGATTACATATGCGATATTTGTCAGAAAGAGTTCAGGACGAAATCTAGTATAATACAGCATTTGCGAGTACACAACGATGAACGCTGTCTTAATCAACCTTTGTTACGCATAAGAAAGACaaagaaaaaagttaaattatacATGAGTCGTTCAATTCAAACGACGTATGTGGAAGAAATGGCTAAACATAAGAATAATTTAGAAATCATTTTGCGCCATTCTAATGCCACACCTATACGCGCCAACAATGACTTAGGCTATGTGTGCTTCTTCTGCCCAACGGCGTTTACCGAGCCAAAATATCTCAAGACACACACTCTTGAGTGTCATGGAGATTTCAAGCACGACCCGTCTCTAAGACCTGATTACTATCCAGTAAGACTGGACATCACGAATTTGACATGCCAGTGTTCCAAACACTTCGATCAATTGACTGACTTAATGCACCACTTGGAAGCTGACCATAGTCAACTTATTCGAACCGACGTCAAAAATTACTTATTACCTTTTCGATTCGACAGCGATAAAGTGTTTTGCGCATTGTGCGATATGGTATTCACATCTTTCAGAAATGCAATAGAGCATATGAACCAGCATTACCGTAATCACATTTGTGACGCTTGTGACGCAGGCTTTGTCACTAATGCTGGCCTGCGATCACACAAAAGAACTCACGTCAGTGGAGAGTACCAATGCGAACAATGCGATCAAGTCTACAATTCTAAGTTGAAGTTGAGTAATCACGTTCGTTCTATCCACCAAGGTATTGTTAATAGGCATAAATGTGCCCATTGCGGCGAAAAGTTCTCGAGCTTAATAATGAAGTATAACCATGTAGTCAAAGAACATGGAGGTGCTCCCACAGAATCGAAGCGTATGACATGTGATGAAGTATTCAGTAGCAAGGATAGTCTTCAAACACATGTTACCACACAACATTTGATGTTAAAAAAACCTATGTGCTCAATTTGTAATATAGAGTTTCCAAAAACCTACGATTTAAAAAAGCATATGGTGAAACACACCGGTGCCCGTGATCATAAATGCGACGTTTGTCAGAAAGCTTACAGGATGAAGTCTacattaataaaacatttgcaaATACACAGCGATGAACACCTTAATCGACCTTTGTTACCCATAACAGTGCAACCAAAAACGACAAAGAAAATAGTCAAATTAAACCAGAGTCCTTCAATTCAAAAGACGTATGTGGAAGAAATGGCTAAACATAAGCATAATTTGCAAGTCGTGTTGCGTTATTCTAATGCCACGCCTGTACGCGCCCACAACGGCATCGGCTATGTGTGCTTCTTCTGCCCAACGGCGTTTCCCGAGCCGAAAGATCTCAAGAGACACACTCTTGAGTCTCATAGAGATTTAAAGCACGATCCGTCTGTAAGACCTGATTACCATCGGGTAAGACTGGACATCACGAAATTAACATGCCAGTGTTTCAAACGCTTCAATCAACTGACTGATTTAATGCACCACTTAGAAGTGGACCATGATCAGGCTTTGTCCTTAGAGCTAGCCTGCGAGTTCACAAAATGTCTCATGGCGATCGAGAGTACCAATGCAAACAATGCGACCAAATGTTTGATACTAAGTCGAAATTTAATAAACACGTTCGCGATGTCCACCATGGTCAAAATAAAAGGCACAAATGTGCCCATTGCGGCGAAAGGTTCTCGAGCTTAG
- Protein Sequence
- MEHHITSPGDTPVIKVEPPLTSTSANKLPIIISTNSLEQRTTITKVQAPTEKGIIKSLEHKIETKRGTEMIKSQHNLGIVLRHSNATPLLGQRGAGYACYYCPIQYPDPADVKRHTLESHNDLKRNPSLPPLRLDNYSVKIDITNLICKVCSTSYAILIDLMDHLRLDHDQPIHTDIKDLFLPFIFDSDTLKCALCDTEFTTFRMLVEHMNIHYRHYICDICDIGFITKVGLRTHKKSHEEGDYQCDQCHKLYNSLNKLNMHIRCVHFGQDKRNKCAYCDEKFSSIITKNNHQFKVHGVALKTVKCKACDKTFRSNQGLREHYKTYHLQIKKFKCSDCDMAFPNNGELTDHMVKHTGARDFKCEICQKAYGRKSTLVQHMRSHNNDRRHKCNHCPLAFVQKYIPQKTQVLKMKRPDTASDAKIVISSSSTVYQSSASMSVEQRTAKHTKERTKNKQNLEIILRHSNATPIRGKEEEGYVCFFCPREFPDPNDLKIHTQENHKDLKKDASQRTPNLDHYTVKLDVTDLTCQCFKSFDKLSDLMNHLRVDHGQPIQTEVKDHVLPFRFHNGNLNCAICDTEFVSFKVGIEHMSKHYRNHICDLCDAGFVTKASLRNHKTTHNKGSYTCDQCLQGYSTIGKLNDHIRYAHRGQNNGHECSHCGETFSSTPLRNYHLSKVHGISPRVAKSSQVSPISAKKVRTKEMAKHKQNLELILRHSNATPIRGHSGIGYVCFFCPMEFPDPGELKTHTLDSHIDLKHELQNPLKRGHFAVKIDITNLTCKFCLTSYDQLTDLMHHLRVEHDQPIRTDVKDYFLPFRFDTDALKCAMCESEFTAFKILIEHMNRHYRNYICEICDAGFVTRASLQVHRKTHNSGDYPCAHCHQVYNTLMNLTSHIRYAHQGQVKRNKCAYCGEKFISLEAKNNHLVKEHGVAPTVAKCTACDRTYGNYKSLRMHYKAYHMMIKKFKCSVCNMDFARGCELKNHMVKHTGARDYQCDVCEKAYGRKSTLRQHMRVHSDDRYKCQHCSMVFLQISVRQQTPLLKDTYIEPSSDKTLPVIIQKSSLAHLTPKAVEHKNKAPNVIAKHMHNLEVIMRYSNATPIQNHNDIGYTCFFCPMEFPDPGVRHQTPLLKDTYIKPSWDKTLPDMIPTTSLAYLTPKAVGHKNTTISSKSNLNPLNKASNVTAKHLHNLEVIMRYSNATPIQNHNDIGYTCFFCPMEFPDPDDPNDTPDDFMVETLDTSSDDEKLPIKIPAISLNRPSLPITVAEEPKHKYNLKIILRHSNATPIRANNDIGYVCFFCPTTFPEPKDLKTHTLKSHGDFKHDPSLRPDYYPVRLDITNLTCQCSKHFDQLTDLMHHLEADHSQLIRTDVKNYLLPFRFDSDKVFCALCDMVFTSFRNAIEHMNQHYRNHICDACDAGFVTNAGLRSHKRTHVSGEYQCEQCDQVCNTKLKLSNHVRYIHQGIVNRHKCAHCGKQFASLIMKNKHVVKEHGGAPTEAKCMTCDEVFSSKASLQTHVTTQHLMIKKPKCSICNMEFSKTYDLMKHMVKHTGARDYICDICQKEFRTKSSIIQHLRVHNDERCLNQPLLRIRKTKKKVKLYMSRSIQTTYVEEMAKHKNNLEIILRHSNATPIRANNDLGYVCFFCPTAFTEPKYLKTHTLECHGDFKHDPSLRPDYYPVRLDITNLTCQCSKHFDQLTDLMHHLEADHSQLIRTDVKNYLLPFRFDSDKVFCALCDMVFTSFRNAIEHMNQHYRNHICDACDAGFVTNAGLRSHKRTHVSGEYQCEQCDQVYNSKLKLSNHVRSIHQGIVNRHKCAHCGEKFSSLIMKYNHVVKEHGGAPTESKRMTCDEVFSSKDSLQTHVTTQHLMLKKPMCSICNIEFPKTYDLKKHMVKHTGARDHKCDVCQKAYRMKSTLIKHLQIHSDEHLNRPLLPITVQPKTTKKIVKLNQSPSIQKTYVEEMAKHKHNLQVVLRYSNATPVRAHNGIGYVCFFCPTAFPEPKDLKRHTLESHRDLKHDPSVRPDYHRVRLDITKLTCQCFKRFNQLTDLMHHLEVDHDQALSLELACEFTKCLMAIESTNANNATKCLILSRNLINTFAMSTMVKIKGTNVPIAAKGSRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -