Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421925.1:8206402-8218135[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 37 0.048 4.2 9.3 0.9 2 23 11 33 11 33 0.91

2 37 0.33 29 6.7 0.4 1 23 39 61 39 61 0.96

3 37 4.7e-05 0.0042 18.7 3.2 1 23 67 89 67 89 0.97

4 37 0.0004 0.035 15.8 1.4 1 23 95 117 95 117 0.97

5 37 0.00012 0.011 17.5 0.7 1 23 123 145 123 145 0.98

6 37 1.1 99 5.0 0.2 2 14 152 164 151 167 0.91

7 37 0.00018 0.015 17.0 0.1 2 23 256 278 256 278 0.95

8 37 0.042 3.7 9.5 0.5 2 23 287 308 286 308 0.95

9 37 4.2e-06 0.00037 22.0 2.0 1 23 314 336 314 336 0.99

10 37 0.0026 0.23 13.3 1.0 1 23 342 364 342 364 0.94

11 37 0.00018 0.016 16.9 1.6 1 23 370 392 370 392 0.98

12 37 5.4 4.7e+02 2.8 4.8 1 23 424 447 424 447 0.94

13 37 2.1 1.8e+02 4.1 0.4 1 23 453 475 453 475 0.84

14 37 0.015 1.3 10.9 2.3 2 23 481 503 481 503 0.95

15 37 1.2e-06 0.0001 23.8 2.6 1 23 509 531 509 531 0.98

16 37 1.4e-05 0.0012 20.5 1.8 1 23 537 559 537 559 0.99

17 37 4.8e-07 4.2e-05 25.0 0.9 1 23 565 587 565 588 0.96

18 37 0.082 7.2 8.5 1.0 2 23 644 666 643 666 0.93

19 37 0.0015 0.13 14.1 1.0 3 23 703 724 702 724 0.94

20 37 0.00039 0.034 15.9 0.1 3 23 738 758 737 758 0.98

21 37 2.2e-05 0.0019 19.8 3.0 1 23 764 786 764 786 0.98

22 37 5.1e-05 0.0045 18.6 0.4 1 23 792 815 792 815 0.97

23 37 0.00092 0.081 14.7 1.0 1 23 859 882 859 882 0.95

24 37 0.0024 0.21 13.4 2.2 2 23 918 940 918 940 0.96

25 37 8.9e-05 0.0078 17.9 1.3 1 23 946 968 946 968 0.97

26 37 2e-05 0.0017 19.9 2.1 1 23 974 996 974 996 0.98

27 37 7.5e-05 0.0066 18.1 0.8 1 23 1002 1025 1002 1025 0.97

28 37 0.01 0.92 11.4 1.0 2 23 1055 1077 1054 1077 0.94

29 37 0.00024 0.021 16.5 0.8 3 23 1114 1135 1113 1135 0.91

30 37 1.3 1.1e+02 4.8 3.4 1 23 1141 1163 1141 1163 0.85

31 37 1.6e-06 0.00014 23.4 1.6 1 23 1169 1191 1169 1191 0.98

32 37 0.0031 0.28 13.0 3.8 1 23 1197 1220 1197 1220 0.97

33 37 0.0042 0.37 12.6 5.8 1 23 1261 1284 1261 1284 0.93

34 37 0.00019 0.017 16.8 0.6 2 23 1320 1342 1320 1342 0.96

35 37 0.0046 0.4 12.5 2.8 1 23 1348 1370 1348 1370 0.96

36 37 0.00011 0.01 17.6 3.6 1 23 1376 1398 1376 1398 0.97

37 37 0.00031 0.027 16.2 0.2 1 23 1404 1427 1404 1427 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	37	0.048	4.2	9.3	0.9	2	23	11	33	11	33	0.91
2	37	0.33	29	6.7	0.4	1	23	39	61	39	61	0.96
3	37	4.7e-05	0.0042	18.7	3.2	1	23	67	89	67	89	0.97
4	37	0.0004	0.035	15.8	1.4	1	23	95	117	95	117	0.97
5	37	0.00012	0.011	17.5	0.7	1	23	123	145	123	145	0.98
6	37	1.1	99	5.0	0.2	2	14	152	164	151	167	0.91
7	37	0.00018	0.015	17.0	0.1	2	23	256	278	256	278	0.95
8	37	0.042	3.7	9.5	0.5	2	23	287	308	286	308	0.95
9	37	4.2e-06	0.00037	22.0	2.0	1	23	314	336	314	336	0.99
10	37	0.0026	0.23	13.3	1.0	1	23	342	364	342	364	0.94
11	37	0.00018	0.016	16.9	1.6	1	23	370	392	370	392	0.98
12	37	5.4	4.7e+02	2.8	4.8	1	23	424	447	424	447	0.94
13	37	2.1	1.8e+02	4.1	0.4	1	23	453	475	453	475	0.84
14	37	0.015	1.3	10.9	2.3	2	23	481	503	481	503	0.95
15	37	1.2e-06	0.0001	23.8	2.6	1	23	509	531	509	531	0.98
16	37	1.4e-05	0.0012	20.5	1.8	1	23	537	559	537	559	0.99
17	37	4.8e-07	4.2e-05	25.0	0.9	1	23	565	587	565	588	0.96
18	37	0.082	7.2	8.5	1.0	2	23	644	666	643	666	0.93
19	37	0.0015	0.13	14.1	1.0	3	23	703	724	702	724	0.94
20	37	0.00039	0.034	15.9	0.1	3	23	738	758	737	758	0.98
21	37	2.2e-05	0.0019	19.8	3.0	1	23	764	786	764	786	0.98
22	37	5.1e-05	0.0045	18.6	0.4	1	23	792	815	792	815	0.97
23	37	0.00092	0.081	14.7	1.0	1	23	859	882	859	882	0.95
24	37	0.0024	0.21	13.4	2.2	2	23	918	940	918	940	0.96
25	37	8.9e-05	0.0078	17.9	1.3	1	23	946	968	946	968	0.97
26	37	2e-05	0.0017	19.9	2.1	1	23	974	996	974	996	0.98
27	37	7.5e-05	0.0066	18.1	0.8	1	23	1002	1025	1002	1025	0.97
28	37	0.01	0.92	11.4	1.0	2	23	1055	1077	1054	1077	0.94
29	37	0.00024	0.021	16.5	0.8	3	23	1114	1135	1113	1135	0.91
30	37	1.3	1.1e+02	4.8	3.4	1	23	1141	1163	1141	1163	0.85
31	37	1.6e-06	0.00014	23.4	1.6	1	23	1169	1191	1169	1191	0.98
32	37	0.0031	0.28	13.0	3.8	1	23	1197	1220	1197	1220	0.97
33	37	0.0042	0.37	12.6	5.8	1	23	1261	1284	1261	1284	0.93
34	37	0.00019	0.017	16.8	0.6	2	23	1320	1342	1320	1342	0.96
35	37	0.0046	0.4	12.5	2.8	1	23	1348	1370	1348	1370	0.96
36	37	0.00011	0.01	17.6	3.6	1	23	1376	1398	1376	1398	0.97
37	37	0.00031	0.027	16.2	0.2	1	23	1404	1427	1404	1427	0.97

Sequence Information

Coding Sequence: ATGGAGCAAAATCACGGGTGGCGTGCCCCTACTTGTCCTGACTGCGGCAGGAAATTCTCCTGTCCTTCCCAAGTGGGCTATCATCAAAAAGAAGTCCACCAACGTGAGCTCACATTTATATGCGATCAATGTGGCGACAAGTTCCCAAGCATGAACAGACTTAAACAGCATGAAATTAAGCATTTAGAAGTGAAGAACTTCAAGTGTCCCCAATGCCCAAAGGCATTTAAAACTACCACTTATTTGAAACATCATTTGGTGCGACACTCGACTGTCAAAAGGCATATTTGCGAGCAATGTGGGTCGGCCTTTGTTAACTACAAGGATTTAAAGAGGCACACCCTAACGCACATTACTGAGAAGAATTTCAGTTGTCAGGTTTGCACCAAAGCCTTTAAAACTAAGACGCTGTTGGTTGTCCACGAGAAAATACATAACGATAATAAGAAATGGAAATGTCACGTTTGTGAAAAGGCATATGTTCAGTCAAGTCCCACTCGTAAACGCGGAGAGGCTCTCATAATTAAAGAATATGCTCAGTTCTGCAAGGTGACGATCAATCGGGAGGGCAAGCAAAAATACTCTTGCATGCTCTGCATAAAGCAATACGACGAACGTCGTCGCTGGACCGCGCACTACAAAACCGTGCACTTGCAACTGAAGCATATGATAAAGAAAACACACCCTTGCGTTATATGCAAAGAACAAGTGATACCCAGGAACCGCTGGAAGCATATGGAGGACCGCCACGGATGGCAGGCTCCAACCTGCCCTGACTGTGGCAGAAAATTCTCCTATCCTTTCCAAGTGGCCGCACATCAAAAAGAAGTCCACCAACGTCTAGAGAATCTCACATGTGTATGCGAACAATGCGGTGCCAAGTTCTCTAGCGTCCCAAGACTAAAGCAGCATGAAATCATGCATTCGGAAGAGAGGAACTACAAGTGTGACCAATGCCCGAAGGCATTTAAAACTTACACCTATTTAAGGCAACACATGATTCGGCATTCAGATGTCAAGGGTCACATCTGCTCCGAATGTGGAGCGGCATTCaacaattacaaatatttgAAAGCGCACAGCGATAAGCATATTGTTGAGAAGAATTTCAAATGCCAATTTTGCTCCAAAGGATTCAAAACTCCGAAGCAGTTGAGTATCCACGAGAAAATACATACTGGAGATAAGAAACACAAGTGGGGACATTCACATACAAAACCAGACGTCTCACAATTCTACGAAATAATAGAGAAGGACAATGGAACTAGACACAGCTGCACTATCTGCTACCAAGAGTTCAGAGCATTCGATAACTGGCTCCACCACTACTATAGAAAACATCTCAATAAGAACAGGCATCGATGCGTAATATGCAGCAAGGTATACGCCCCTTGGGAAAGAACGAGGCACATGGAAGAGCAGCACGGGTGGGACCCCCCAACATGTAATGCTTGCGGGAGAAAATTCTCCTTCCCACATCAAGTCATCAATCACCAGAAGCAATTCCACTTGGGAGAAAAGAATCATAAGTGCGAAGAGTGCGGACAGACATTCTCGAACCTCAAAAACTTGAAGCAACACATCTCGACGCATTTGAAAGTGAAAGATTACAGATGCGAATACTGCTCGAAGGGATTCAAAACGGCCAAGTATCTGAGGCTGCATTTAAAGATACATTTGAATGACAAGAAATACGTGTGCTCTGTTTGTGAAAAGCCGTATGTTCAATTGAGCAATCTGAAATGGCATATGAGGACGCATCATCTAGATGTAGTTGTTGAAACTGTTAATCTGCGTCTTTACAAAGTGCAGAAGAATAGTTACTTCATAGATTGGATCGGCCCACGATCACCACGAATAAAGAAGACAAATAAAGAAGTGACAAAATTCTGCGAAATTAAGGACAAAGGAGATGGAACTAAATACTGCATTTGCACTATCTGTGAACGCGAATATAAAAATTGGGACAGATGGCTTCAACATTACAACAACGTTCACCTGGGATTGAGACAGAAGACGTACCCCTGCGTTATATGCCACGAGCAACTCAATCCTGTAAAGCGAGCGGCTCACATGGAACAGCAACATGGTCGGAAACCTCCAGCGTGCGACACATGCGGCAAAAAATTCGCGTTTCCACATCAGGTGACGAGACACCAGGAGCTATACCATATGGGAGAACAGAAAAATTATTACAAGTCCGAGGTTTTATGCGAGGAATGTGGTCAAGCGTTTTCCACTATCGGGAACATGAAACTGCACATGGCCAAGCATTCTGATGTTAGAAATTTTAAATGCGAGTATTGCTTAAAGACATTCAAAGTGAAGAAAAGTCTGAGCCGACATATTAGGTTACACTTGAACGATAGGAGGTATAGATGTCCGGTGTGCGAAAAGGCTTATGTGCAGTCAACCAGCCTCAAAGGACACATGTCTAGACGGCATCCTGATTATTTACCTACGACAATCCTCACAATCTGTTATTCTATTCTAGGGAAACCCCCTGGATCAAAGCCAAAAAGAGACGTGGCTCAATACTGCGAAGTTAAGGACAAGGAAGATGGAATTCAAGCTTACGCTTGCACTATCTGCGATCGCGAATACAAGCATTGGAACAACTGGCTTCAACACTACAAGCTCGTGCATCTTAAACTGATTAAGAAGACTCATCCCTGCGTCATTTGTCAGGAGCAACTCGTTCCTCGACACCGTTGGGGCCATATGGAGCAAAAACACGGCTGGAAAGCCCCAACATGCGACGCTTGCGGACGAAAGTTCTCCTATCCACACCAAGTGATTAAACACCAGAAGCGATTCCATATGGGTGAAAAGAATCACACGTGCGAACAATGTGGCCAAGCGTTCTCCGATATCAAAAACTTAAAACAGCACTTAGTCAAGCATTCTGATGTTAGAAATTTTAAATGCGAGTTTTGCTCGAAGGCATTCAAAACACCAAAGTATCTGAAGTTACATTTAAAGATACACTTGAATGATAAGAGATATAAGTGCCCCGTTTGCCAAGAGGCGTTTGTGCAGACAACCAGTCTTAAATATCACATGTCCAGGCGGCACCCTGACTATGTACCAACGGCACTCAGATATGCCCGCAATTGGCTAGAATACTACACCCTAAATGAAGAAGGTGATAAGCAAGTTGTCACGTGCAACGTTTGCGACAAGAATTTCAAGGATAAACTGCCTTTCCGTCAGCACTTCCTCAAAGTGCATCTAAAGCTGACGAAGAAGACATGGCCTTGTGTCTTATGCCAGATGCAGTTGCTTCCCTCTAAGAGGGCCAAGCATATGGAGGAGGCGCACGGCTGGAAGGCTCCTACGTGCTTACCGTGCGGAAAGAAGTTCTCCTACCCCAACCAACTGCAAAGGCATCAAAAGGTTTTTCATCTTGGCTTAAAGGATTTCCAATGCGAACATTGCGACATGTCATTCGATTGTCGGCAGAGGCTCATCGTCCATTCTGCTAAACATTCCGATGCCAGACCGTTCCCATGCGAGTACTGCCCAAAGACGTATAAGACTAAGAAGAATTTGAGTGCACACCTCAAGAGGCATTCGGGACAAGGAAAATATAAATGTCGAATATGCTCTACTTCGTTTTTGCAGCAAGGCAGTTTGAAGCATCATATGAAACAGAATCATCGAGATCATCGAGATGAGGATGAGAATGACGACGAGGAAGAAGATGAAGATTATTATTTGGTTTACAAGATAGAGTACTTAAAATACTGCACCAAACCGGGCGAAGGCGGATCCCGCGATTACACGTGCAACGTATGCGGCAAGAATTACAAGCACAGAGACTACTTTCAACAGCACTTCTTGCACGTACATCTGAAGCTAAGAAAGAAGACACGCCCTTGTGTCCTTTGCAATGCGCCGCTGGCTCAATTTCAGAAGGCCAAGCATATGGAAGAGGCTCATGGCTGGGAGGCACCTACATGCAATGCGTGCGGGAAAAAGTTCCCATTCccctacaaacttaaaatacatCAAAGAGTTTTTCATATGGGCGAAAAAGACTTCAAATGCAAACATTGCGATATGGCATTCGATACTCGGCAGAGGCTCACCGTGCATTCTGCCAAGCATTCCGATGTTAGGGCCTTTGCATGCGAGTATTGTTCGAAGACGTATAAGACCATAAGGCATCTGCGTGTTCACCTAAAAACACATGCTGATGAAGGACGATATGTCTGCAAAGTATGTGGAACTGCCTTTGTGCTAAATGGAAGTTTGAAGTACCATGTGAAGCGAGAACATCCGCATGAGGATAATATTGATGAGGATTTGCCCCTTTGA
Protein Sequence: MEQNHGWRAPTCPDCGRKFSCPSQVGYHQKEVHQRELTFICDQCGDKFPSMNRLKQHEIKHLEVKNFKCPQCPKAFKTTTYLKHHLVRHSTVKRHICEQCGSAFVNYKDLKRHTLTHITEKNFSCQVCTKAFKTKTLLVVHEKIHNDNKKWKCHVCEKAYVQSSPTRKRGEALIIKEYAQFCKVTINREGKQKYSCMLCIKQYDERRRWTAHYKTVHLQLKHMIKKTHPCVICKEQVIPRNRWKHMEDRHGWQAPTCPDCGRKFSYPFQVAAHQKEVHQRLENLTCVCEQCGAKFSSVPRLKQHEIMHSEERNYKCDQCPKAFKTYTYLRQHMIRHSDVKGHICSECGAAFNNYKYLKAHSDKHIVEKNFKCQFCSKGFKTPKQLSIHEKIHTGDKKHKWGHSHTKPDVSQFYEIIEKDNGTRHSCTICYQEFRAFDNWLHHYYRKHLNKNRHRCVICSKVYAPWERTRHMEEQHGWDPPTCNACGRKFSFPHQVINHQKQFHLGEKNHKCEECGQTFSNLKNLKQHISTHLKVKDYRCEYCSKGFKTAKYLRLHLKIHLNDKKYVCSVCEKPYVQLSNLKWHMRTHHLDVVVETVNLRLYKVQKNSYFIDWIGPRSPRIKKTNKEVTKFCEIKDKGDGTKYCICTICEREYKNWDRWLQHYNNVHLGLRQKTYPCVICHEQLNPVKRAAHMEQQHGRKPPACDTCGKKFAFPHQVTRHQELYHMGEQKNYYKSEVLCEECGQAFSTIGNMKLHMAKHSDVRNFKCEYCLKTFKVKKSLSRHIRLHLNDRRYRCPVCEKAYVQSTSLKGHMSRRHPDYLPTTILTICYSILGKPPGSKPKRDVAQYCEVKDKEDGIQAYACTICDREYKHWNNWLQHYKLVHLKLIKKTHPCVICQEQLVPRHRWGHMEQKHGWKAPTCDACGRKFSYPHQVIKHQKRFHMGEKNHTCEQCGQAFSDIKNLKQHLVKHSDVRNFKCEFCSKAFKTPKYLKLHLKIHLNDKRYKCPVCQEAFVQTTSLKYHMSRRHPDYVPTALRYARNWLEYYTLNEEGDKQVVTCNVCDKNFKDKLPFRQHFLKVHLKLTKKTWPCVLCQMQLLPSKRAKHMEEAHGWKAPTCLPCGKKFSYPNQLQRHQKVFHLGLKDFQCEHCDMSFDCRQRLIVHSAKHSDARPFPCEYCPKTYKTKKNLSAHLKRHSGQGKYKCRICSTSFLQQGSLKHHMKQNHRDHRDEDENDDEEEDEDYYLVYKIEYLKYCTKPGEGGSRDYTCNVCGKNYKHRDYFQQHFLHVHLKLRKKTRPCVLCNAPLAQFQKAKHMEEAHGWEAPTCNACGKKFPFPYKLKIHQRVFHMGEKDFKCKHCDMAFDTRQRLTVHSAKHSDVRAFACEYCSKTYKTIRHLRVHLKTHADEGRYVCKVCGTAFVLNGSLKYHVKREHPHEDNIDEDLPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -