Lstr039475.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421926.1:9919500-9941116[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-05 0.039 14.9 0.0 5 38 1 34 1 37 0.94 2 2 0.0022 3.6 8.7 0.1 1 37 190 226 190 229 0.92
Sequence Information
- Coding Sequence
- ATGCAAGAAGCTGCTTTTGCAGTGATAAAAGAAGGAAAGAGTTTACGAGCAATTGCCAAGGAATTTGGGATCTGCCATGCCACACTGTTCCGGTTCATTCGGAAACTGAAGTCAGGTGAAAACCCAACAGTTGGCTACAAACCTAAGCTACTATTTACCGCGGAGCAGGAACAGGAAATTGTGAAGCATTTAGTACTATACGCTAAGGATACCATGGAGCCTTTTGTGAAAGTAGCGGAGTATGTTAAAAAAGACAATTTAAAACGTATACTGTCAAAGCCTCAAGAACATGATGTGTTAGACATAGTTAGTGAAGTGACACCGACAAGCGTGGAGTTGGTGGACTGTTTCCGGAAGAATGGAGTTTGGCCTTTCAACCCGAGTGTCATCACTGGTGGTGAATTTGTGGCTGATCCTGGAGACGAGTATGATTTTAAAATACCTGAGGAGGAGAGATCTATTGCTCCAAGTCAAAAAACCTTTCCAGAAGCTGCAAAAGTAGCGCAGACTTTACCAACAGCAGAGATGGGTCGCTATAAAAAAGTAATCCGAAAAATGGGCAACCACACAGAAGACGCGATGAGAACCGCTCTCGAGCTTATACGACTGTACGGCTTCAGTCTGCGACAAGCCAGCACGCAATGCAACTTAAGCTACGCCACTGTCCGTAGATATGTAGTCCTAGCGAAAAAAAACGAAGGCAAACCTATACGCTTGACGCCCAACTATGAAGTTAACAGGGTTTTTAGCGCAGAAGAGGAAGCATGCTTAGCGAAATACGTTAAACAAGCAGCGGAGAATTTCAAGGGTTTAACCGCTGAAGGATTCTCTTCGCGAGATTGTCGGCGACTCGCTTATGAAATGGCGataattattgataaaaaaataccaaaagcATGGCATAATGCCAAGATGGCGGGCTTGGAGTGGCTCAGGCTGTTCAAAGAGCGCCATGACATATCTCTCGCGAAAAGGAAGGCGGGAGAGATAATAAGAGAAACGGTGTTTGATAGAGATGAAATGGAGGCGTTCTTTTgccatttgaaaattgagaagaCGGCAGCCACGATTGCAGCAAATTATTTATTGCCAGTAAAGTCGAGATCCAAATACGAGAAAGCGTACAAAGATTTTTCTGATTGGAGAACTAAGAAATGTACGACTTCGATGTCAGAGACTGTGTTATTAGCGTACTTTGAAGAATTATCTCGTAAATTTAGTTCTGGTAGCCTGTGGACCATTTATTCAATGGTCAAAAACACGCTAAATATCAAGCATGATGTGGATATTTCCAAATATGGCAAATTGACTGGTTTTCTTAAGCGAAAAACGGAGGGTTATaaagcgaaaaaagcgaaaacATTTACACCcgatgaaataaataagtttttaaatGAGGCACCAGATATATTGTATCTGCAGTCAAAGGTAGCACTGATATTTGGAGTTATGGGTGCTTGTCGCCGACAAGAactttacaatctccagttcaGCGATGTCAAAACCTTTGATAAAACAATATTAGTAACCATCCGCAACAATAAGACAAAAACAGACCGTACTTTCACAGTAACTGGCAGCCACTCTGACCTCTGTAAAAAATATACGGAACTGCGTCCGAAAATTTGCTCAacatcaaatttttttttgggctACTCAGCGGGGAAGTGCTGTGACAAGAAGATTGGTATCAATAAGTTTGGAGTTTTGGGAAAAACTATAGCGAATTATTTGAATCTTCCGGATCCTGAGCTGTATACCGGACACTGCTTCCGCAGGACATCTGCTTTGTTAGATGCAGAGTATGCAGACGGTgacataactttaaaaaatgtgaTCTCCAGCAGTCCAACGGTGAACCACCTGGTGGTGCTGCCTGGCGGTGCTGGCCCGAGCAACATTTCCAACACGAAATTCGTTTCAGCTACCAACGTGCCAAAAGACCAAGACCCACTATCCAGAAACACCATCGATCAGTGCCGCTTCTGCGGTGAGTTCTGCAAAGAATGCGTCCCCGTCTCCAACATGCATCTCTCCACCAATATGACCACCATCGCCTTCAACGAGATTGTCGTGCAGTTGGACTTCAGCGACCGAACTCTGCCGCACACTGTCTGCAAACACTGCGACGCGAAACTACAAGAGATGTTCGATTTTGTTAAACTCGTCAAAAATGCGCAGAAATCTCTCATCAGTGTCGGAGAGAATGTAACAGAAGTCGAGGTTGAGAATGCTAGAGAAGACGTTGAAACTGTAGTTGTGAAAACTGAATATGAAGAGGATAGTGACGAAGCTGATAGCGAGGAGAGTAAGGAAGCTGATAGCGAGGAGAGTGAGAAAGATGAAGAAGATTCCAAAAGTGGAATAGTAGACTCTGTGTCAGTTGGCGAAActatatttattaaagaaaatttaggAACGCAAAAAAGGAAAATGAAAGAACTTCCTAAAAATCCGAAGAAAGCTAAAGCTGATAATAAAAGTGAGAATGAAACTGAATTGATAATTGATATAAAAGAAGAAGTGATTGAATTGGATGAAAATGATGGTGATACAGGGTGTAAGATTAGTGATACAGGAACTGATGTTAAACCGAGTGAAACGGAACTGGCGACTAGTGCTTTAGTTTATGAAATGAAAGGTGACGGCGCTGGGCAAGGATACAGTTAG
- Protein Sequence
- MQEAAFAVIKEGKSLRAIAKEFGICHATLFRFIRKLKSGENPTVGYKPKLLFTAEQEQEIVKHLVLYAKDTMEPFVKVAEYVKKDNLKRILSKPQEHDVLDIVSEVTPTSVELVDCFRKNGVWPFNPSVITGGEFVADPGDEYDFKIPEEERSIAPSQKTFPEAAKVAQTLPTAEMGRYKKVIRKMGNHTEDAMRTALELIRLYGFSLRQASTQCNLSYATVRRYVVLAKKNEGKPIRLTPNYEVNRVFSAEEEACLAKYVKQAAENFKGLTAEGFSSRDCRRLAYEMAIIIDKKIPKAWHNAKMAGLEWLRLFKERHDISLAKRKAGEIIRETVFDRDEMEAFFCHLKIEKTAATIAANYLLPVKSRSKYEKAYKDFSDWRTKKCTTSMSETVLLAYFEELSRKFSSGSLWTIYSMVKNTLNIKHDVDISKYGKLTGFLKRKTEGYKAKKAKTFTPDEINKFLNEAPDILYLQSKVALIFGVMGACRRQELYNLQFSDVKTFDKTILVTIRNNKTKTDRTFTVTGSHSDLCKKYTELRPKICSTSNFFLGYSAGKCCDKKIGINKFGVLGKTIANYLNLPDPELYTGHCFRRTSALLDAEYADGDITLKNVISSSPTVNHLVVLPGGAGPSNISNTKFVSATNVPKDQDPLSRNTIDQCRFCGEFCKECVPVSNMHLSTNMTTIAFNEIVVQLDFSDRTLPHTVCKHCDAKLQEMFDFVKLVKNAQKSLISVGENVTEVEVENAREDVETVVVKTEYEEDSDEADSEESKEADSEESEKDEEDSKSGIVDSVSVGETIFIKENLGTQKRKMKELPKNPKKAKADNKSENETELIIDIKEEVIELDENDGDTGCKISDTGTDVKPSETELATSALVYEMKGDGAGQGYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -