Lstr008112.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421903.1:28962049-28983002[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 3e-05 24.9 0.0 1 39 91 129 91 133 0.89 2 2 0.78 1.3e+03 0.5 0.0 29 42 769 782 768 784 0.88
Sequence Information
- Coding Sequence
- ATGTCAGGACCAGAGTTTCTAAGAACATCACGCGGTGGGACCATGCTAATTCACAAAGGATACAAGTACCACGTCAGACTTCGAAGGCAGGCAAAAGCTGGAGTGAAGGTCTACTGGAGATGCGGGACCCATCTCAAGATGGGGTGTCGTGGTTCAGTGGTCACCATCGGAAGGAACGTGACGAAATATGTGAAGCCACACGATCATGAACATTTTGGGAGAATAGATGCCGTATCCAAAAGAAGGAAAATTAAATCGAAAACAGTCTATAGTGAAGATGATTTAAAGAAAGCGCTTGACGCAATTCGCATACGCGGTAAAGGCATAAGAGAAACCGCTAAAGCTTTTGGCATCCCATTTTCAACAATACATGACCGCATCACCGGAAAACGTGGAGAGGCACTGCTACCAAAAGGACCAGAACCAGTACTAGGAGCTAAGGGGGAAAAGTCAATAAAAGACTGGCTAACAAATATCACTCAATGTGGATTTCCGGTCAAAAAAGATGAACTACTGGACACTGCTCAAAGTATTATAAAGGATAACGGGATACACAATCCTTTCAAAGATGACCGGCCAGGACAAACATGGTACAGAAAGTTTTTAATAAGGCACCCTGATATATCGAGCAAGGCTGCTGAGGCCACACGCAAAGCGAAAGAAATGGTAACTGAAGATTCCATCAGATCATGGTTCGCTGGATTAGAAACTTTTCTAAACAAGACCAACAATCAAGATATATTGAAGTGTTCGGAGCGAATTTTCAGTGGggatgaaattattttttcgatGTGCCGGACAACAGGAAAGATATTGGAACCAATAAGCGCCCGCAAGTCGGCAGGAAACGATAAAGATAACTTAACTGTGTCAGTGATAGTGAACGCTACAGGTCAAACATGTCCTCCGCTTATAGTGTTCCCTGCTGCGGCTATTGTGAACAGCGTGCCTGAGGACTGGGATTCTGGGAGAACAGATAGCGGCCGGATGCGTGCAGATGTATTCCATGAATACATATCAAATCACTTTAACAGCTGGATCGAGCGCAATCAAATAGAAAAGCCTATATTGCTGCTTGTCGATGGATGTAAATCCCACATGTCGTTGGCTCTGAGCACTCTGTGTGAAACGCAACAGATAATACTGTATGCTCTGCCTCCTAACACCACCCCAATGCTACATCCGGTAGATAACAGCGTTTTCGGTCTGCTTAAATCGTCCTGGAACATAATAGTAAACGATTTTTTGTCCAGGCCTGAAAACCGAAACTTAAGTTTGACCGAAGTCAATTTTTGCAAGTTATTCAAGGAAATATTAGACGACCCAAATATGAAACAATGTATCTTTAAGACTGTTCGCGGTAAACGCAAGAGACTGACAGAAGCTGAAAAGCAAAAACGATACAGGGAAAAGCTAAAACAAAATCCAGAAAAAAACgaagaaagaaaaagaaaaaaacgacAGTCTTATCATAACTCAAAACTGCTTGCTAAAGACATGACGCCAAATGAAAGGAAGAAAGCAAATGCTCTTTGGAAAGAAAAGAAGAGAGAATATCGGCAAAAGAAGAAGAATTATGTGCAAGATAACTCTGACTACAAAATCTGGGTTTCACTGGATGTGAAAAAAGAACACGCGGTAGCTTCTGAAAGCTCAGAATCCGATGAATCATCCAATGATGAGGATTATAGAACAGAGTCATCAGATGACGAGGAAGAGGCACTAGTTAGTGAAGGATGGACTGACAGTCGTGAGGGTATAAATACAAATGTATGTGATTTTCATGAACAGAGTGGTATAAAAGACGATCTGACCAGAAAGAGTCCAACAGAGTTTTTTGACATGCTGTTTACTGAGGAATTGTTGCACCAACTAGTGTGGAATATTAATCAATATGGCACCAAAATGCGCGAGGCACGCGGCAATAAAAGACCAATCTTCCGAACTACCGTCCAAGGGGGCGTAAAACTATTCTACCACGGCTACAAGTACTACCAGAAACGAAAATCTTCAGCAGGAGAACGCGTGGTCTGGCAATGTGGGACCCATAAGAGGTTAAAATGCCCCGGCTCTGTTACTACCGTGGGTAGCAATATTGTTAAGATCAATAATGTGCATGATCATGATGTTGTCAAGACAATTTTCCAGCCAACCAAGCGCGGGGGTCAAGTGCTAGTCCACGGCCAGTTCAAGTATCACAAACAGAAGCAACAGGGGTGTAAGACTCGCTGGCAATGCGCGGCCCGACAGACGTTCGGTTGCCCGGCAACCGCAGTCACCATAGGAGAGATTATTGTAAAGCTTAGTCATActACATTCGAAAGAACTAAGCGAGGCGGCTTAATGCTCGTACACACCGGCTACAAGTACTACAAAGAGCACTGCCTCGGCATCAAAGTTCGTTGGCAATGCGCCTCTCGCAAGAGATCTGGTTGCCCGGCTACGGCAACCACTATAGAATcaCCCATATTCCTGCCATCCAAGAAAGGCGGCCGAGTCTTATGCTTCGAAGGCTACAAGTACCATCGTGAAAGACAAAGGGGTTTGAAGACGCGGTGGCACTGCGGTACACATGCCAGGTTTGGATGTGCTGGCTCCGTCATCACCATCGACGACATGGTTGTTAGGACCAACTTGTATTACGGAACATCTCTGCTAGGGAACAGAGTCCTCTTCCGCCGAGGCTACAAATACCACCGTAAACAAGAGAACAGGGGTAAAACCATATGGCATTGCGGCACCCACCGCCGCGTCGGGTGTACTGGCACCGTCACCACGTACAAGGAGGAGTTTCTGAAGGCTCATGAACATAATCATGGATTTTCAGGGTTATTTTTCGGGACATCACACTTGGGCAACAAGATGTTGTTCTACCGAGGATACAAGCACCACAAGAAACGCGAGAATCGCAACAAGGTGGCCTGGCACTGTGGTACCCACAGGAAAGTCGGCTGCAAGGGGATGGTCACCACCATCGATGACACGGTGGTTAAGTTCACCTCTCACTACCATTCTCCATTTTTGTAA
- Protein Sequence
- MSGPEFLRTSRGGTMLIHKGYKYHVRLRRQAKAGVKVYWRCGTHLKMGCRGSVVTIGRNVTKYVKPHDHEHFGRIDAVSKRRKIKSKTVYSEDDLKKALDAIRIRGKGIRETAKAFGIPFSTIHDRITGKRGEALLPKGPEPVLGAKGEKSIKDWLTNITQCGFPVKKDELLDTAQSIIKDNGIHNPFKDDRPGQTWYRKFLIRHPDISSKAAEATRKAKEMVTEDSIRSWFAGLETFLNKTNNQDILKCSERIFSGDEIIFSMCRTTGKILEPISARKSAGNDKDNLTVSVIVNATGQTCPPLIVFPAAAIVNSVPEDWDSGRTDSGRMRADVFHEYISNHFNSWIERNQIEKPILLLVDGCKSHMSLALSTLCETQQIILYALPPNTTPMLHPVDNSVFGLLKSSWNIIVNDFLSRPENRNLSLTEVNFCKLFKEILDDPNMKQCIFKTVRGKRKRLTEAEKQKRYREKLKQNPEKNEERKRKKRQSYHNSKLLAKDMTPNERKKANALWKEKKREYRQKKKNYVQDNSDYKIWVSLDVKKEHAVASESSESDESSNDEDYRTESSDDEEEALVSEGWTDSREGINTNVCDFHEQSGIKDDLTRKSPTEFFDMLFTEELLHQLVWNINQYGTKMREARGNKRPIFRTTVQGGVKLFYHGYKYYQKRKSSAGERVVWQCGTHKRLKCPGSVTTVGSNIVKINNVHDHDVVKTIFQPTKRGGQVLVHGQFKYHKQKQQGCKTRWQCAARQTFGCPATAVTIGEIIVKLSHTTFERTKRGGLMLVHTGYKYYKEHCLGIKVRWQCASRKRSGCPATATTIESPIFLPSKKGGRVLCFEGYKYHRERQRGLKTRWHCGTHARFGCAGSVITIDDMVVRTNLYYGTSLLGNRVLFRRGYKYHRKQENRGKTIWHCGTHRRVGCTGTVTTYKEEFLKAHEHNHGFSGLFFGTSHLGNKMLFYRGYKHHKKRENRNKVAWHCGTHRKVGCKGMVTTIDDTVVKFTSHYHSPFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -