Lstr038530.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:10553358-10571478[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-10 3.3e-07 31.2 0.1 2 41 17 56 16 60 0.92 2 2 0.79 1.3e+03 0.5 0.0 1 14 469 482 469 488 0.81
Sequence Information
- Coding Sequence
- ATGGTTCGGAACTACATCAGGAAAACTGACAGAGGCATGACATACAGCAAGGAGAAGCTTCTAGAAGCAGTCGCGAAGGTCAGGTCAGGCGAGCTGAACGGCTACGAGGCAGCCAACATATACAGCATCCCGCGGACCACTCTGTATGACTACATTAAGGGGAAAAGTAAGAGGTCTCTCACTCTTGGAAAACCACCAGCACTATCTCCAGAAATAGAGGAAACAATTGCTAAAAACCTCCTAGCGCTAGAAGAAAATGCCTTCTACTTAGGAAGAAAAGAAATACTAGATCTCGCGGGGTTATATTtgaacgaaaataaaattagtcaTCCGTTCAAATCTGGGAAACCGGGAGAATGCTGgctaacctctttctcgaaaagAACCAACGTCAACCCTAAACCGGTGTATAAACAGTTTGGGACCCAAGACAAGGATGTTATTCTGGTTAAGGAATTCTATTCTATACTAGAAATGAGGATAGAAAAACTAGAATTAGCAGATAAACCCGCACATATATGGCATATGGAAGAACATAGCTTTTACAAAGGCAATAGAGTAAATTGTCACGACAAAGAGAAAGATATAACTGTTGTTACAGCGTGTAGCGCTGAAGGCAAGAAAGCGCCACTCTTGATCGTATTTAGAGGCGAGAAAAGTCATGACTGGATGCTAGGAAAGCATTTACACATCAGCCATAACACCGGTATGTGCAGAGAGGTATTCAAAACGTATTTCTCGACATTCCTGAATTATATTGATGATACCAAACCGAATCTGGTTATTTTTGAAGCTCCAAGCTCTTTAATTAATCTAGATGTCGTTGAAGAGGCAAGGAAAGCTAACGTCACAATATTGAAGGCACCTAGTTATTTGGAAACCTTAGACATATCAATCGCTAGAAGTTTGAAGCTAAAATGGAGCCTAGTCTTCGGGGACACGACTAAAGAGTTTGCAACCCTTCTATCCCAACTATTCGATGATCTAAACGAGACTGAAATAGGCGAAGACTTTAAAAACGCAGGTATCCATCCATTTGAAACAGTTTGTGACAGTAAATTTGAAAGCGATCGTTTGAAGATTTACGAAGAATATAAGTGGTTTAAGGAAAGGCATTTGAGTAGTATAAAGTTGAACAAGGATACAGAAGAAGTGATGGTGAACGAGGGTTCGGCTTTCCGAATAGATTTTGAGATGGAATTCGACAGTTCAACGTCGATGTCGATGACTGAAGAAGTAGAAACACCAGGATGCAGCGGCGAGATGTTGAGAAGAGCCTTAATAACTGTCAAAAAAGAACTGATGATACACGATCAAATAGAGAACGACAAAGAATTAACAAAAGCCGAGGAGGACCACCTGGTTGCCTGGGTAATGGATCTAACTAAGGCAGGGTTTAAAATAACCGAAGATAATTTAATAGAAGCTGTAGACAATATACAAGGAAACCCGTCTATAAACAAACCTGATCGTCATAAGTATGAATGTTTGATAAGGAGTCATCCTAAATTGAAAGATAAATTAAGCAAGAAGACGGAAGAGAAATTAACGAAAGAATGTATAAACGCCTGGCTTTATCGTGTACGGATGTACCTTAAGAAAGCTAATTGTGGAGGCGTTCTTTGTCATCCAAATCGAATTTACAACTTCGGAGAGGCAATATTACATCTCGACGCTGAAGATCACGTCGATAAGAGTGATGATATAACAGTTTACGTGTCAGCTTCTGCAGATGGTAATGTGCAGCCTCCATCTGTGTTATTCCCGTTTAAACAAACGGTTGGCTCAAATCCATGGTCAAAAGCCGAAATCCTTAACGATCAAATAACAGACGTATTTTACGATTGGTTGATAGAACACAACATTCAATTACCGGTTATCTTATTCCTCGATCAAATGTCTGACATAAACTTGTCTTTATTCGAATTCTGCAAAGAGAAACAGATTATTCTTCTAGCTTTGCCGAGTACTAAGATACAACCACTTGAAGCTGTTTTTCGGCCGTTAAAACGATATTGGGATGAAAACAGTCAAATGAAAAAGCTCGATGGAGAAAAAATTGCAAAAGCATTGGAAAATTATGTTAAACAAGATTTTAGAAAAGAAATAACTAATAGGTTCAAAGCATGTGGTATATACCCTTTTAATACAAATGTCGAATATAATATTGAGAAAGGAATCACTCTTAAAGATTCCCATATATTGGAATCAAAAGAAAAATCAAACCAAATAGATCTTCTAAAAGAAATAGAGAAAAGGATATCAAGCGAGGTCTTAGAACAATTCAAGAAAACGGATTCGTGGCAAGGAGATCCTCGACATAGCAGTCTTTTTCTGTTTTGGAAGAATATCAGGGACGAAAATAAAGGTAAACGACAGGAAGATAGAGTACAGACAGAAGATAAAGAGGCAGAAAATAGGAGAACGGCTGGTGATAAGGGCAAAGGAAGTGCGTTCATCGAGATATTTGTCGAAGAACTCTTTGATGCTCATGCGCCGGTTCGTCCAGTGAAGTTGAAGCGGCCACCTGCACCTTGGATCACGAGGGGTGTTCGTATGGCGATGTCGAGGCGTGACAAAGCTTTTCGCATATTCAAGCTTGACCGGTGTGATGTAAACTGGGCTTTATTTAAGGCTGCGAGAAATCGTTGTAACCAAATGGTGAGAGCTGCGAAGCGTCGCTACATCCATGATAACGTTATCTCTGCTTCTCTTGCTGATACCTGGAAGTTCCTTAGATCGCTTGGCATTGATATTGTTCCTTTTACATTTAGCCCCGTATCCCACGAGGAAATCCATAAAATCATTGTGTCCATTAAGTCTCAGGCAGTTGGCCATGACAACGTGAGCCGAGTTATGGTTATCCACATCCTTGATCATGTTCTGCCTGTGGTGTCGCATATTATTAATACTTCTTTGCTCACTGGGGTTTTTCCATCATGCTGGCGTAAGGCCTGTGTCATTCCTCTTCCTAAAGTTGATAACCCTAGTTCTCTAAATCATTTTCGGCCTATATCTATACTTCCCTTTCTCTCTAAAATCCTTGAGGCTGCGGCCCACAGACAAATCTCGCAATTTGTTCACCGGCATAATCTCCTGTCACCCTTTCAATCTGGTTTCCGTTCCGGTCATAGCACCACCACCGCACTACTTAAAGTTACAGAAGACATTCGGCTGGGGATGGAAGCATCCAAAGTCACGGTGATGGTGCTTATAGACTTTTCAAATGCCTTCAATGTGGTTGACCATGATCTACTTCTCGCTACTCTGACTCATTTGCGGGTTTCCTTAAAGGCAACAGAGTGGTTTTCGTCGTATCTGTCCGATCGTGTTCAGGCTGTCCGTGCCAGTCGATCACTATCCGACTGGTGTGAGCTGAATAATGGTGTTCCTCAAGGTGGCATACTTTCACCTCTTCTGTTTTCTGTGTTCATCAACTTGATAACCGCCAACATTCGTAGCTCTTACCATTTGTATGCAGACGATTTGCAGCTATACGTTCATGCGGATGTGAATGACATCAACACCGCCATCAAGATGTTAAATGCAGATCTGGATCACATCGCCGAATGGTCCAGTTGTTTTGGTGTATGTGTTAATCCAGCCAAGTGTCAAGCCATAATTATGGGAAGCCAGTGGCACGTCACTAAGCTTAGCACAGTCTCGATTGAGCCGATCGTTTATGATGGGGATGTTATTCCTTTACTTAACAAAATGCCTAAACCAGTAGCAGGCAGCTCCAGAGGTTCCAAACGGGGGACCCTCAAGACAAATAATGTTGTTGGAACTGGCGGGCCACTGGGACGGCTTGAGCTGCGATGCTGCGCGTCCGGGTGTGACAACGATGAAGAAAGATACCCTGGGAAGGTGTTCTATCCCTTCCCTGCTGATCCTTCCATGCGCTCGCAGTGGCTGCGCAAGATCAGGCGTCCCGATTTGCTGGAGCTGTCACCTGAGGACCGCGTGTGTTCCGACCACTTTAAACCAAGCCAGTATACATCCAAGGGGTCGCTGCAGGCAGACGCCTTGCCCATAGTGAAGAGTACCAAGAAACGGGTGGCCGATGATGGCCAGGCAGCAGGACCATCGCGAGTCGCACCTAAACGGAAACCGACAGAAGAGACCGAAACACAAAACCGAGGCAAACGACCCCGATCAATCACAAAATCCAATACAGAAGTAGAAATACGTGTTGAAATCAAAGAAGAACCTCAAGAAACAACTAACTACGAACCAGAAACAGTCACTGAAGATTTAACATTAGACGTCAAAGAAGAAGTAACTACAGAAAGCCCTGTACACATAGAGACACAATGCATAAAAGATGTTAAAGATGAACCTGGCGTACGCAATGCTGCAAGTCAAACCTTTTCAAGAAAGGAATTGTATTTAAGCGTTGCTTGTTACACTACTCCTGAACACATAGATCTTCCTCAACCAACCAAAATACCAAGGACAACCAATAAATTGTCGACACAAACGACCAATCCTCTTTTAGCGTACTTCACAGATCCAATTAAGAAAGCGATGAAAGCTGAAATCAAAGCGACGAATAAATTGACCAAAACTTTAACCAACGCTGCTATGGACAAAACCAAGTTCATGCAATACTGTGATATCTATCTAAATGAGAAGATAGCTCATATAGTAAAAACGCATTCGCATATACAAGAGAAGTTCGTAGGGAACAGATACGGACATGAATTCAAGATGTTTGCTCTCAATTTGTGTTTAAGCAATCCGGAATCATACAAATTTGTTGAGCAGATCTTCAATCTACCATCCAGGACCACGCGTAGACGGCTACAGTTGCCGGCAAGGACAGGAACTAATCCTAATTTGATAGAATATTTGAAGGTTAAAGTGGGTGAGATGACGGAGAAGGAGAAAGTGTGCGCTATATGTTTTGATGTGATGCGGGTTGCCAAGAATCTTTGGTACGAAGTGAACAATGATTTTCTGTGTGGAATGCAGGAGATAGATCAGGTTTTGGGGCCCGACCCGGCCGAATATGCCGCTGTACTCATAATCCGGGGATTATACACGAAATGGGCGCAGCCTATTTCATTCTCCTTCATGACGGAGAAGCGTCGCTATCCAGAGCTAAAGGAATGGCTACATAAGATCATACGAATGACGTTTGACATCGGGCTGAACGTTAAAGTGTTAGTCGCCGATTTAGAGAACGATTTCATGGATGTTTCTTCACCCAACGGCGAACACTACTTCGAAATAGACGGGAAAAGGATCTACTACTTCTATGATGTGAGATACCTCTTCAAGAGTGCTAGAGACACATTGAGGAAGTATGACTTCCATATTGGTCCAAAAATTGTCCAGTGGAGCCACATACTGAATGTTTACGACAGAGAACGCGAACACGACTTGAGTTTAATACCTGAAATCACGAACGCGCATGTAAGACCCTCTAAAGACGTAATCAATGATGTGAATTTGGCGGTTCAATTGTTCAGCAGCTCCGTAGCCGCCGCAATGAACTACCGCGTTATTTCCAAGCTGATACACCAGAAAGTGAAAGATACAGTGGAATTTATAGCCAAAATGAGTAAACTGATGGATATACTCGGTGGAAAATCCTTGAGAGCCGCTTATAGAGGCACGGTTCAGCAGAATCAAGTGTTATCTGACGTTTTAGAATATTTTCAAGCTTTGGAAGTGGTAGATAAGCGAGATAACGCAGTTGAAGCTCCATTTGTTACTGGATTGAAAGCGAATATAAGAACGGCAAAGTCTCTCTTAGAACAGTTGCAGAAAGAAGACTTGCAGTATCTTTATACGAAGTTTTTAAGCATGGAGTGTGTCGAAGCGTATTTTGATGAGATCCGACGACTGGGGGGAAACTGCTGCGAGCGGCCAACGGCGATCATGTTCGCTCGCTCTTTCCGTCGCCTCTTCCTCGTCAATTTGGTGAAAAAGGACGGAGATAACGAACAAGACTTAAAGTCGACGTTGTACAAGATAAGCGAATACATGAAATCGGATACAGAGAAGACACAGGAACCGGAAAGCGAGCGATTTAAACGAATGTTAGGGGGAGGAGTCGGGGACATTAAGATTCAGTGGCCGTCTATAAAGTACGTCGCTGGATATCTTGTTTGGAAGTGTCTGGAAAAGCATCAGTGCGAGATATTTATAGAAACACTAAGCGTACATTGCCGGGTGGAAGCAAACGCAGGAACGCTGCTTGATCTCTTTAGAAAATACAATGCTGACAACATAAACAATATATGTCTGATTGAACCTCCTGCGTCCCTGGTAGATTTTGTGAGACACATGGACCGTAGATACTGCGAATATTACACTAAACCGGACAGACAGCCAATGAACTTTGGTTGGAACACGTATCTGTTTATGGAGAATGACACTTTTGACTTACCGTGTGAATGCTTCCCGTTAATGTATATGAAGTTATTGTTTATAAGGCTGAAGATAGAGGTTAGTGTGAGGGAGCACAATAAGCTAAGCAAGAACCCTAGGAAACCGAGGCATCTGCAGAAAGTGGTTaagaaattatgtaaaaaagGTTTGCTACGCAAGAGAGGACCTTCAGACGTATTTCCGGAGACCGAAGACATATTCATCCAGTATTATCCAGGATATACCAACAGTCCCTGTAGAATTATGGAAAAGTACTTAGAACTTAGTGCTTTACACTCACAGGCGACCTTCAACCAGAAGGTAGTAAGTTAA
- Protein Sequence
- MVRNYIRKTDRGMTYSKEKLLEAVAKVRSGELNGYEAANIYSIPRTTLYDYIKGKSKRSLTLGKPPALSPEIEETIAKNLLALEENAFYLGRKEILDLAGLYLNENKISHPFKSGKPGECWLTSFSKRTNVNPKPVYKQFGTQDKDVILVKEFYSILEMRIEKLELADKPAHIWHMEEHSFYKGNRVNCHDKEKDITVVTACSAEGKKAPLLIVFRGEKSHDWMLGKHLHISHNTGMCREVFKTYFSTFLNYIDDTKPNLVIFEAPSSLINLDVVEEARKANVTILKAPSYLETLDISIARSLKLKWSLVFGDTTKEFATLLSQLFDDLNETEIGEDFKNAGIHPFETVCDSKFESDRLKIYEEYKWFKERHLSSIKLNKDTEEVMVNEGSAFRIDFEMEFDSSTSMSMTEEVETPGCSGEMLRRALITVKKELMIHDQIENDKELTKAEEDHLVAWVMDLTKAGFKITEDNLIEAVDNIQGNPSINKPDRHKYECLIRSHPKLKDKLSKKTEEKLTKECINAWLYRVRMYLKKANCGGVLCHPNRIYNFGEAILHLDAEDHVDKSDDITVYVSASADGNVQPPSVLFPFKQTVGSNPWSKAEILNDQITDVFYDWLIEHNIQLPVILFLDQMSDINLSLFEFCKEKQIILLALPSTKIQPLEAVFRPLKRYWDENSQMKKLDGEKIAKALENYVKQDFRKEITNRFKACGIYPFNTNVEYNIEKGITLKDSHILESKEKSNQIDLLKEIEKRISSEVLEQFKKTDSWQGDPRHSSLFLFWKNIRDENKGKRQEDRVQTEDKEAENRRTAGDKGKGSAFIEIFVEELFDAHAPVRPVKLKRPPAPWITRGVRMAMSRRDKAFRIFKLDRCDVNWALFKAARNRCNQMVRAAKRRYIHDNVISASLADTWKFLRSLGIDIVPFTFSPVSHEEIHKIIVSIKSQAVGHDNVSRVMVIHILDHVLPVVSHIINTSLLTGVFPSCWRKACVIPLPKVDNPSSLNHFRPISILPFLSKILEAAAHRQISQFVHRHNLLSPFQSGFRSGHSTTTALLKVTEDIRLGMEASKVTVMVLIDFSNAFNVVDHDLLLATLTHLRVSLKATEWFSSYLSDRVQAVRASRSLSDWCELNNGVPQGGILSPLLFSVFINLITANIRSSYHLYADDLQLYVHADVNDINTAIKMLNADLDHIAEWSSCFGVCVNPAKCQAIIMGSQWHVTKLSTVSIEPIVYDGDVIPLLNKMPKPVAGSSRGSKRGTLKTNNVVGTGGPLGRLELRCCASGCDNDEERYPGKVFYPFPADPSMRSQWLRKIRRPDLLELSPEDRVCSDHFKPSQYTSKGSLQADALPIVKSTKKRVADDGQAAGPSRVAPKRKPTEETETQNRGKRPRSITKSNTEVEIRVEIKEEPQETTNYEPETVTEDLTLDVKEEVTTESPVHIETQCIKDVKDEPGVRNAASQTFSRKELYLSVACYTTPEHIDLPQPTKIPRTTNKLSTQTTNPLLAYFTDPIKKAMKAEIKATNKLTKTLTNAAMDKTKFMQYCDIYLNEKIAHIVKTHSHIQEKFVGNRYGHEFKMFALNLCLSNPESYKFVEQIFNLPSRTTRRRLQLPARTGTNPNLIEYLKVKVGEMTEKEKVCAICFDVMRVAKNLWYEVNNDFLCGMQEIDQVLGPDPAEYAAVLIIRGLYTKWAQPISFSFMTEKRRYPELKEWLHKIIRMTFDIGLNVKVLVADLENDFMDVSSPNGEHYFEIDGKRIYYFYDVRYLFKSARDTLRKYDFHIGPKIVQWSHILNVYDREREHDLSLIPEITNAHVRPSKDVINDVNLAVQLFSSSVAAAMNYRVISKLIHQKVKDTVEFIAKMSKLMDILGGKSLRAAYRGTVQQNQVLSDVLEYFQALEVVDKRDNAVEAPFVTGLKANIRTAKSLLEQLQKEDLQYLYTKFLSMECVEAYFDEIRRLGGNCCERPTAIMFARSFRRLFLVNLVKKDGDNEQDLKSTLYKISEYMKSDTEKTQEPESERFKRMLGGGVGDIKIQWPSIKYVAGYLVWKCLEKHQCEIFIETLSVHCRVEANAGTLLDLFRKYNADNINNICLIEPPASLVDFVRHMDRRYCEYYTKPDRQPMNFGWNTYLFMENDTFDLPCECFPLMYMKLLFIRLKIEVSVREHNKLSKNPRKPRHLQKVVKKLCKKGLLRKRGPSDVFPETEDIFIQYYPGYTNSPCRIMEKYLELSALHSQATFNQKVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871369;
- 90% Identity
- iTF_00871369;
- 80% Identity
- iTF_00871369;