Lstr024861.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421914.1:9299599-9300206[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-13 8e-10 39.6 0.0 4 38 18 52 17 57 0.91 2 2 5.3 8.6e+03 -2.2 0.0 21 31 105 115 105 115 0.80
Sequence Information
- Coding Sequence
- ATGGTTCGGAATTATAAAAGGAAGACCGATCGCGGAAAATgggacattaaaaaaatggagCTAGCTGTCAAAGAAGTGTCGAGTGGCCAGGTTAGCTGCAAACGCGCATCCCAAACGTATGATGTACCTCGTTCGACCCTGCAAAGAAAAGTGGAAGAGTATAAGAAGAATCAAACTTTTGAGATTAAGGTTTTGGGTTCTTTTAAACCAGTATTTACAAGTGCTCAAGAAGAAGAACTAGCTTCATATATTAAAGACATGGAAAGCCGCTTGTTCGGCCTATCCCCAAAGGATGTGCGAAAACTAGCCTATCAGTTGGCAGAAAAAAATGATATCCCTCATACTTTCGATCCACAAACCAGAATGGCAGATAAACTGTTCAACGTCGACGAAACGGGAATGACGACAGTGGCTAAGAGTCTAGGAAAAGTTATTGCTACTACGTAA
- Protein Sequence
- MVRNYKRKTDRGKWDIKKMELAVKEVSSGQVSCKRASQTYDVPRSTLQRKVEEYKKNQTFEIKVLGSFKPVFTSAQEEELASYIKDMESRLFGLSPKDVRKLAYQLAEKNDIPHTFDPQTRMADKLFNVDETGMTTVAKSLGKVIATT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -