Lory007257.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- stc
- Assembly
- GCA_030157265.1
- Location
- CM058051.1:16034435-16037257[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 1.4e+04 -3.8 3.0 6 10 188 192 184 192 0.61 2 15 0.16 1.4e+03 -0.6 0.3 4 10 218 224 217 224 0.95 3 15 5.6e-05 0.48 10.5 16.1 4 18 233 247 231 248 0.93 4 15 8e-06 0.069 13.1 8.6 1 18 284 301 284 302 0.93 5 15 6.6e-08 0.00056 19.8 10.4 1 18 342 359 342 360 0.97 6 15 1.6 1.3e+04 -3.8 0.4 6 10 390 394 390 395 0.90 7 15 7e-05 0.6 10.1 17.0 4 19 407 422 400 422 0.87 8 15 1.1 9.4e+03 -3.3 2.0 5 10 451 456 451 456 0.93 9 15 0.037 3.2e+02 1.4 12.4 1 11 462 472 462 484 0.90 10 15 7.8e-09 6.7e-05 22.8 14.5 1 19 489 507 489 507 0.98 11 15 1.9 1.7e+04 -4.1 1.8 15 18 536 540 535 541 0.51 12 15 0.0018 15 5.6 16.6 1 19 546 563 546 563 0.87 13 15 0.16 1.4e+03 -0.6 0.3 6 11 566 571 566 572 0.94 14 15 7e-09 6e-05 22.9 13.8 1 18 599 617 599 618 0.95 15 15 6e-05 0.52 10.3 14.8 1 18 628 646 628 647 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGGAGTTCATACGATTCTTGCAGTGTGGTGAATAATGAGCATTATCACACCAATATGTCGTTTTACGATTCTAATGTAAATTCAGACTATAATTGTAATCCTGGGACAAGTCAGGTGACTACTGAAGATAGGAAAAAACCAGACAGAAAGTATTATAATAATGGacgtaaaaatgaaaaatatggatCGGGACGAACGTATAATCGAAATAAAACCGAAAAAGAAACGAAGAATTTTCGAACAAATCAAAGGAATTATAATTATAGGAATTACGATAGAAGGAATTATAGAGGTTATGAAGGGGCTAATGGTAGGAATAATTGGCGCAGATGCAAGGGTTCTACCGATCAGAAAAAGCttgatGCTGCGTCCCAGCGCGAGCGCCTCGAGCAGATGCTTTCTCGTCGCATGCTTGAATGTCTCGTTTGTTgcgaaaaaatcaaacatacCGATAAAATCTGGACATGTGAACAATGCTACCACATTCTCCATCTAAACTGTACCATTGCATGGGCAAATTCTTCGAAATTAGAAAACGGTTGGCGTTGTCCCGCTTGTCAAAATGTTTGTACTGAAATTCCTAAACAATATACTTGTTATTGTGGTAAAACACAAGAACCACGTCCTCTACCAGGTGTTATACCACATGCTTGTGGCGAATTATGTGAAAAAGCACGTCGATTATGCGACCATAAATGTACCATTTTGTGTCATCCAGGACCATGTCCTGATTGTCATGTTATGGTTGCGAAAAAATGTGGATGTGGATCGACGACACAAACTGTTAAATGTAGTTCAGATACAGAAGTTGTTTGTGGAGGAATTTgtcgaaaaaaattgaattgtactATCCATGAATGTAGAGATAAATGCCATTCAGGAGAGTGTTTCGattgtaaagaaaaaattcagcaGGAATGTTTTTGTGGAAAAGTTGGACGGAAAATGGATTGTACGAAAGAAGTTGATGGAAAAACGCAGTATAGTTGTGGAGATGAATGTGggaaattattgaattgtgGGAATCACCGATGTAAAAAGATTTGTCATGAAGAGAATTGTGATGTTTGTGAAAGAGatgttaattttgttaaaacgtGTCCATGTGGACGAACGCTGCTAGATATTGAACggaaatcttgcttggatCCTATACCTTGCTGTGATAaggtGTGTGGTAAAGCTTTGCGTTGCGGCCAGCCTGCAGCTCCTCACTTTTGCAACCATCAATGCCACGAAGGTCCCTGTCCGCCATGTCCTCAATCAACTTTAATTCGTTGTCGTTGTGGCTATATGGATCGGGAAATTCCTTGCAATCAAGTAACGACAAAAGCCGATGATGCCCGATGCGAGAAAAAATGCACAAAAAAGCGTTTATGTGGTAAACATCGATGTAATCAACGTTGTTGTATTGAAATCGAACACATTTGTCCATTACCATGCAATCATTTATTATCTTGTGGTCAACATCGTTGCGAACGCAACTGTCATAGCGGTCGATGTGCTCCTTGTCAGGAAACAAGTTTCGAAGAATTATATTGCGAATGTGGCGCTAGTGTGCTTTATCCACCGATACCATGTGGTACAAAACCACCACCATGTGATAAACCATGCTCAAGACCACGATCATGTGGTCATCCAGCGAATCATTCCTGTCATCCAGGACCATGTCCGCCATGTACAGTTTTATGTAAACGATGGTGCCATGGAAAGCATGAACAAAGAAATGCGATTCCATGTTATCAGGAAGATTTTAGTTGTGGTTTACCATGTGGGAAGCCTATGAATTGTGGCAAACATAAATGTGATAAGACGTGTCATTCGGGTCCATGTCCGGACGTTTGTAAACAGAAATGTCAAGTAAAGAGAACCCAATGTGGACATCCATGTGGAGTGGTTTGTCATGATGGGCAATGTCCAGAAACATCATGTAAACAACAAGTCCCAGTGTCTTGTCCTTGCGGATTGCAAAAAAGCACAAGACCCTGTATAGAACTTACCGAGGAATATAAAGAAATGGAAATGGTCaatttaaaagacaaaatggcGGATATGATGAAGGATCAAGCGGTGGATATCAGTGATATTGTCAATAAACCCAAACGACCATCGGTCttaaaaatattggaATGCACAGAAGAGTGCCGCGTGCTGGAACGCAATCGACGCTTAGCAATCGGCCTCCAAATCCGCAATCCCGACCTAAGTCAAAAGCTAACACCGCGCTATTCAGATTTTATGCGCGGATGGGCAAAAAAAGACCCGCAATTTTGTCAGAAAGTGCACGAAAAATTAACGGAATTAGTTCAATTAGCTAAACAAAGTAAACAGAAAAGTCGTTCTTATTCGTTTGAATCGATGAATCGCGATAAAAGACATTTTGTTCATGAATATTGCGAGCATTTTGGGTGTGAAAGTGCAGCCTATGATATGGAACCGAATCGGAATGTTGTAGCAACTGCATTTCGAGAAAAATCCTGGCTACCTAGTGTTAGTCTTTTGGAGTTTATTCAAAGAGAAAATGGACAAAGGAAAGTGCCAGGACCGGTTTTAAGTAAAGGCTTGATTGGAAAATCGGAAAGTGTAGCACTGAAATTGCCTAGAAGAGGAAAAGTGAATACACCAACAGGGGAAATGGttgattattttgataatcCGCCTGTGTAA
- Protein Sequence
- MSGSSYDSCSVVNNEHYHTNMSFYDSNVNSDYNCNPGTSQVTTEDRKKPDRKYYNNGRKNEKYGSGRTYNRNKTEKETKNFRTNQRNYNYRNYDRRNYRGYEGANGRNNWRRCKGSTDQKKLDAASQRERLEQMLSRRMLECLVCCEKIKHTDKIWTCEQCYHILHLNCTIAWANSSKLENGWRCPACQNVCTEIPKQYTCYCGKTQEPRPLPGVIPHACGELCEKARRLCDHKCTILCHPGPCPDCHVMVAKKCGCGSTTQTVKCSSDTEVVCGGICRKKLNCTIHECRDKCHSGECFDCKEKIQQECFCGKVGRKMDCTKEVDGKTQYSCGDECGKLLNCGNHRCKKICHEENCDVCERDVNFVKTCPCGRTLLDIERKSCLDPIPCCDKVCGKALRCGQPAAPHFCNHQCHEGPCPPCPQSTLIRCRCGYMDREIPCNQVTTKADDARCEKKCTKKRLCGKHRCNQRCCIEIEHICPLPCNHLLSCGQHRCERNCHSGRCAPCQETSFEELYCECGASVLYPPIPCGTKPPPCDKPCSRPRSCGHPANHSCHPGPCPPCTVLCKRWCHGKHEQRNAIPCYQEDFSCGLPCGKPMNCGKHKCDKTCHSGPCPDVCKQKCQVKRTQCGHPCGVVCHDGQCPETSCKQQVPVSCPCGLQKSTRPCIELTEEYKEMEMVNLKDKMADMMKDQAVDISDIVNKPKRPSVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPRYSDFMRGWAKKDPQFCQKVHEKLTELVQLAKQSKQKSRSYSFESMNRDKRHFVHEYCEHFGCESAAYDMEPNRNVVATAFREKSWLPSVSLLEFIQRENGQRKVPGPVLSKGLIGKSESVALKLPRRGKVNTPTGEMVDYFDNPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -