Lory001950.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- nfxl1
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:26213289-26216917[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.84 7.2e+03 -2.9 1.4 14 19 153 158 153 158 0.86 2 20 0.012 1e+02 3.0 0.4 4 10 189 195 188 196 0.97 3 20 4e-07 0.0034 17.3 15.6 1 18 203 219 203 220 0.98 4 20 1.3e-07 0.0011 18.9 15.6 3 19 258 274 250 274 0.86 5 20 1.3 1.2e+04 -3.6 1.0 6 10 299 303 298 303 0.88 6 20 2e-10 1.8e-06 27.8 11.5 1 19 309 327 309 327 0.99 7 20 7.6e-06 0.065 13.2 9.6 1 18 362 379 362 380 0.96 8 20 1 8.9e+03 -3.2 0.2 1 4 389 392 389 393 0.87 9 20 2 1.7e+04 -5.0 2.3 5 10 403 408 403 408 0.91 10 20 0.00014 1.2 9.2 17.4 1 18 414 431 414 432 0.94 11 20 4.9e-10 4.2e-06 26.6 9.7 1 18 441 458 441 459 0.97 12 20 0.87 7.5e+03 -3.0 0.8 5 10 487 492 487 492 0.93 13 20 0.00043 3.6 7.6 8.0 9 19 507 517 505 517 0.91 14 20 0.058 5e+02 0.8 6.5 4 12 529 537 527 537 0.90 15 20 1.9 1.6e+04 -4.0 3.5 14 18 565 569 565 570 0.87 16 20 0.002 17 5.5 6.0 1 11 606 616 600 617 0.81 17 20 2 1.7e+04 -6.0 3.6 6 10 634 638 631 638 0.80 18 20 7.5e-06 0.064 13.2 17.5 4 19 648 663 646 663 0.93 19 20 9.3e-06 0.08 12.9 10.9 1 18 706 725 706 726 0.90 20 20 0.91 7.8e+03 -3.0 0.5 6 10 755 759 754 759 0.90
Sequence Information
- Coding Sequence
- atgtcatcaaaaaaACGCGAAACTAACGTTTGGAATAAAACCCAAGATTCTAAACCCATAAAAAACACACTAACGCCAGcagaaatcaaatttaaagaaGCCCATCAAAAACTGCAAGCAGCTGTTAAAAAACATGTAAAAGATTATGAATCTTCATCAGAGGAAGAAGAATTAGAGTCAGAGAATATCATAGataaaattagaaaaaattacacCAAAACTGGTGGCAAAAATGAGGATTTAACTCGAACTATTGAGTTTTTGAAAGAATCATTCCAATCAGGCACTGTTACATGTTTGATTTGTATATCAAGAGTGAAGAAAGACGCCAACATTTGGAACTGTTtgaaatgcttttgtgttttCCATTTACAATGTATTCAACGATGGtctaaagataaaatttatcaaaagaagCAAAGTCTTGAAGTTGGTAGTATTGATTTATTGACATGGGATTGCCCGAAATGTAGACACAGCTATGAGACGAAAGATATTCCGGAAAAATACGTTTGTTTTTGTGGCAAAACTGAAAATCCGAAGTATGTTTTAGGATTTGTGCCGCATTCTTGTGAGGAAATTTGTGGGAAGAATTTAGTGCCGGAGTGTGGGCATTATTGCGTGCTGCCATGTCATCCAgGTCCCTGTCCGCCTTGCGCTTCAACAATCAACATTTCTTGCTATTGTGGCTCTCAGAAACCAACAACGAGACGTTGTAGCGATAAAAGTTGGTCATGTGATACTCCATGTGGTAAATTATTACTTTGTAAAAAACACAACTGCTCAGAGCCGTGCCACCCTGGAGATTGTAAACCTTGTCCTAAGAAAAGTCTACAGAAGTGTTTATGTAAATCCAATCAGAAATTACGTGACTGTGCTACACCAATTTGGCAATGCGATAAAgtttgtaataaaacattatCTTGTGGAAATCACAAATGTATGGTTGTTTGCCATGCTGGTGATTGTAATCCGTGTCCTTTGACTGAATTAAGGATTTGTCCTTGTGGTAAAAGTAAATTTCAGTTGCCTTGTACTGAAGAAACACCAACTTGTGTGGACACTTGCGATAAATTGCTTGATTGTGGGCTACATCGATGCAATAAGAGGTGTCATAAAGAAGCCTGCGGTTTGTGCCTTGAAATCGTCGAAAAATCCTGCAAATGTGGCCTTCATTCCAAAGAAGTTCAATGCTATAAGCTTTACACTTGCGAAACAAAATGTAAACGTTTAAAAGATTGCAACAAACATCCTTGCAACAAAAAGtGTTGTGATGGCAGTTGTCCCCCATGCGAAAAACCCTGCGGTAGGACACTCAATTGTGGCAATCATAAATGTCTTTCTGTTTGTCACCGAGGTTTATGTTATCCTTGCAACCAGACAGAAGTCATTGCATGTCGTTGCGGCCAAACTAAACTTACTGTTCCTTgtggaagaaaaaataaaattaagccGCCAAAATGTATCAAATTATGCACgaTTCCCCCAGACTGTCATCATGAGAAACGCGAACCCCACAAATGTCACTTTGGGGACTGCCCTCCTTGTAAACAAATTTGCAACAAATCGTATCCAACATGCCCCCATTCATGCAAATCGTCATGTCATTCGGCTGTCCTCGTAAAAATCGAAGCTCAAAAACCATCAATGCCTTGGGAACAAACTGAACCGCATTTTGAATTAAAAGCATTGCCTTGTCCCAACTGTGAAATACCAATAGCAGTAACTTGTTTAGGTTCTCATGAAACTAGCAATTGGCCTTGCTATAAAGCTGTGCCTTCGAGTTGTCATCGCCCATGTGGGCGTATTTTACCATGCGAAAATCACACGTGTACTCTACCATGTCACCTTGTTGAAAACCCACCAGATGGCGTTAAATCTGGTGAAAATTGCGAAGTTTGCGAAAATCCTTGTATGAAAAAACGTCCTGAAGGTTGTGTGCATGAATGCCCGCAACCATGTCATCCAGGATTATGTCCTCCTTGTAAACAAATGATAAGAATTCGTTGTCATTGCGGTTTGAATCAACCGTACGTGTCGTGCAGTGATTGgttgattttagaaaaaagaGAAATGATCAAAAGTTGTGGGAATCAGTGTCCGAAAAATTACAATTGTGGGCATAGATGTCGCTCTAATTGTCATTCAGGTCTATGTCCGAATTCTGAGTCTTGCAAAAGGAAAGTAAAATTGACTTGTAAATGTAAAAGattgaagaaagaaatttCGTGTGAGTTGGTACGAAGTGGCGCTAAAGTCGATTGCGATGAAGTTTGTCTTCAAAAGAaggaagaagaaaaaagacaAAGGGAAACAATGGATGAACTGAGAAAAAAAGAAGAGGAGCTGAAAAATGAGAAGGAGTTGgcgaaatataaaaaaatgtttgaaggGAAGAAGAAGAATAGGGATAGGAGGTTATATGAAGAAGTTGAAGAAGATTCGTTTGTTCGCAAGTATTGGTTTGTTTTTGCCACGCCtacgattttatttatttcgttAGGAGTGTTTTATTTAACTGGGGGTTttgactaa
- Protein Sequence
- MSSKKRETNVWNKTQDSKPIKNTLTPAEIKFKEAHQKLQAAVKKHVKDYESSSEEEELESENIIDKIRKNYTKTGGKNEDLTRTIEFLKESFQSGTVTCLICISRVKKDANIWNCLKCFCVFHLQCIQRWSKDKIYQKKQSLEVGSIDLLTWDCPKCRHSYETKDIPEKYVCFCGKTENPKYVLGFVPHSCEEICGKNLVPECGHYCVLPCHPGPCPPCASTINISCYCGSQKPTTRRCSDKSWSCDTPCGKLLLCKKHNCSEPCHPGDCKPCPKKSLQKCLCKSNQKLRDCATPIWQCDKVCNKTLSCGNHKCMVVCHAGDCNPCPLTELRICPCGKSKFQLPCTEETPTCVDTCDKLLDCGLHRCNKRCHKEACGLCLEIVEKSCKCGLHSKEVQCYKLYTCETKCKRLKDCNKHPCNKKCCDGSCPPCEKPCGRTLNCGNHKCLSVCHRGLCYPCNQTEVIACRCGQTKLTVPCGRKNKIKPPKCIKLCTIPPDCHHEKREPHKCHFGDCPPCKQICNKSYPTCPHSCKSSCHSAVLVKIEAQKPSMPWEQTEPHFELKALPCPNCEIPIAVTCLGSHETSNWPCYKAVPSSCHRPCGRILPCENHTCTLPCHLVENPPDGVKSGENCEVCENPCMKKRPEGCVHECPQPCHPGLCPPCKQMIRIRCHCGLNQPYVSCSDWLILEKREMIKSCGNQCPKNYNCGHRCRSNCHSGLCPNSESCKRKVKLTCKCKRLKKEISCELVRSGAKVDCDEVCLQKKEEEKRQRETMDELRKKEEELKNEKELAKYKKMFEGKKKNRDRRLYEEVEEDSFVRKYWFVFATPTILFISLGVFYLTGGFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -