Basic Information

Insect: Latheticus oryzae
Gene Symbol: RIM101
Assembly: GCA_030157265.1
Location: CM058057.1:2430923-2435644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.25 18 5.9 0.0 1 23 191 214 191 214 0.94

2 5 9.6e-05 0.0071 16.7 2.9 1 23 249 272 249 272 0.95

3 5 2.8e-06 0.00021 21.5 1.7 1 23 278 300 278 300 0.98

4 5 0.0023 0.17 12.4 5.3 1 23 306 328 306 328 0.98

5 5 0.0011 0.08 13.4 0.1 2 21 336 355 335 356 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.25	18	5.9	0.0	1	23	191	214	191	214	0.94
2	5	9.6e-05	0.0071	16.7	2.9	1	23	249	272	249	272	0.95
3	5	2.8e-06	0.00021	21.5	1.7	1	23	278	300	278	300	0.98
4	5	0.0023	0.17	12.4	5.3	1	23	306	328	306	328	0.98
5	5	0.0011	0.08	13.4	0.1	2	21	336	355	335	356	0.95

Sequence Information

Coding Sequence: atgtatATGAAATGTAGAGTTTGTTTAGATCCAAATAAAACACTGATGTTTTTAAAACGTGAAGAACCCGACggaaacaaattaatttcaatgtATGAATCACTAACAGATTTTGAGtgGCTTGATGGTATAAAAACAGCTTCGTATTTATGTTTACAATGTATTGATGATCTAAAAATATCATACgaattccaaaggaaatgtttggacagttatcaaatcttgaaaagtgaggttagTTTTGAGGAACTTGGAAATGATCAGATTCAagaagaaataattattattgagaCTGATAGTAGTTTGATTGAAGCAGAAAGTAATAAAGAGTTTGAAATTAGGAGTAAAACTCAAATTGTTGATTTGAATGAGGCCCGGACTAAAGATTCATATGAAAGTAAAACTGCAGATTTGAATGAGGCCGAAACTGCAAATTCAGATGAGAATCAAACGGAAATCATTGATAATGCAGAAGTTCCAAcgcttcaaaaatttaaagtcaGGCATTTTCCACCTGAAGAAATTGAACAAGCCATTAATGAATTCAAATCAAGGGGGGAACAAGCATCTTACAAATGTTTAGTATGTCCATATATCTTGTCAACAATTCAAGCTGTCTCTGTACATATGGCTCAGTCACATAGgGAAATTTGGGTGAACTGGTGTTATCTTTGTAATGAAATCGTAGATAATTTGTCTGAACATAAACAAATCCATAAAAATGAAACCGAaatttggaGATACTTCTTATGTTCAAATTGTGGTAAAACTTTCCTTCATAAAAGTCGTTTAGAACAACATATGAGAGTACAACATAGTGAGCTTAAACCatataaatgtaatttttgtgataaaactttcaaattgcAGTCTGTTCTGAAAGTACATATGACAGTTCATTCAGatAATAAACCATATAAATGCGATTTTTGTGATTATTCATGCAAGATTAGTTATCGATTGAAACAACATATGAAATTACATAAAGAAGGAGAAGAAATAGTGACTTGTTCAGGCTGTGCTCAAAGTTTTAAGTCGAAAGGTTTATTAAGACTGCATGTTCGAGACtttaaagCAGCTTCGGATCTACAAACCTTGAAGACTATAAATGCACCGTCAGTATTTACAATTAACCACATTCGTCACTCCTCAGGGCATCCACAAAAAGTTCAGAAACCAAAATTTTATGGGTCGTCTGAATCCGAATCTGACACTGATCTTGAACCTATAGGTCAAAGGGGTGAATCTGATTTTTGGCGCGAAAAAATGCGAACTTTCCACCGAGTTTTAGATGTGAACAAAGACGGTGTTATATCTTACGACGATTTTATGTTATTAACTGAAAGATTTATTGAACTTGGTCATTTGAATGAGAAGCATACTGAAGCTTTCAGGAAATTAATGAAAAATCTTTGGGAAAAAAGATGGGGTCCTGTCAATCCATATAATTTGGTAACAGTTGAACAGTTTTTGGAGGATATGCATCATGTTGTTAACGATAAGAAGTTAGTGAGACGGGCGCATTGTTTCCTTCCGCATCTCTTTAGGGCAGTTGATAAAGACCAATCTGGAGAGATTACAAAAGAAGAATTCAAATTGTTCTACAGGTGTCTTGGATTACAAGATGATGATGCTGTTTTAGCCTTCCAATGTATTGACAGTAACTGCGATGGAATAATAACAATGCGAGAATTTGTTAAACATGGAAGAGAATTTTTATTGAGTGAAGATGACTGGACTTTCAGTAAATATTTCTTCGGACCTTTAATCAACGATCATTGTTAA
Protein Sequence: MYMKCRVCLDPNKTLMFLKREEPDGNKLISMYESLTDFEWLDGIKTASYLCLQCIDDLKISYEFQRKCLDSYQILKSEVSFEELGNDQIQEEIIIIETDSSLIEAESNKEFEIRSKTQIVDLNEARTKDSYESKTADLNEAETANSDENQTEIIDNAEVPTLQKFKVRHFPPEEIEQAINEFKSRGEQASYKCLVCPYILSTIQAVSVHMAQSHREIWVNWCYLCNEIVDNLSEHKQIHKNETEIWRYFLCSNCGKTFLHKSRLEQHMRVQHSELKPYKCNFCDKTFKLQSVLKVHMTVHSDNKPYKCDFCDYSCKISYRLKQHMKLHKEGEEIVTCSGCAQSFKSKGLLRLHVRDFKAASDLQTLKTINAPSVFTINHIRHSSGHPQKVQKPKFYGSSESESDTDLEPIGQRGESDFWREKMRTFHRVLDVNKDGVISYDDFMLLTERFIELGHLNEKHTEAFRKLMKNLWEKRWGPVNPYNLVTVEQFLEDMHHVVNDKKLVRRAHCFLPHLFRAVDKDQSGEITKEEFKLFYRCLGLQDDDAVLAFQCIDSNCDGIITMREFVKHGREFLLSEDDWTFSKYFFGPLINDHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -