Basic Information

Insect: Latheticus oryzae
Gene Symbol: Sall1
Assembly: GCA_030157265.1
Location: CM058050.1:14655259-14671543[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.8 7.2e+02 0.9 0.9 1 22 10 31 10 31 0.91

2 14 1.2 89 3.8 0.4 3 23 356 378 354 378 0.90

3 14 2.1 1.6e+02 3.0 5.5 1 22 476 497 476 500 0.90

4 14 2.4 1.8e+02 2.9 0.7 2 19 557 574 556 580 0.87

5 14 0.00042 0.031 14.7 1.1 2 23 593 615 592 615 0.94

6 14 0.0011 0.082 13.4 0.6 1 22 620 641 620 644 0.90

7 14 0.0071 0.52 10.8 0.9 2 23 658 680 657 680 0.95

8 14 0.0032 0.23 11.9 0.0 2 22 686 706 685 706 0.96

9 14 8.4e-05 0.0062 16.9 0.2 1 23 762 783 762 783 0.98

10 14 2.4e-05 0.0018 18.6 0.7 1 23 789 811 789 811 0.98

11 14 0.0021 0.15 12.5 0.7 1 23 833 855 833 855 0.96

12 14 0.00043 0.031 14.7 0.6 1 23 890 912 890 912 0.98

13 14 0.062 4.6 7.9 7.4 1 23 918 940 918 940 0.98

14 14 0.002 0.14 12.6 4.1 1 21 946 966 946 971 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.8	7.2e+02	0.9	0.9	1	22	10	31	10	31	0.91
2	14	1.2	89	3.8	0.4	3	23	356	378	354	378	0.90
3	14	2.1	1.6e+02	3.0	5.5	1	22	476	497	476	500	0.90
4	14	2.4	1.8e+02	2.9	0.7	2	19	557	574	556	580	0.87
5	14	0.00042	0.031	14.7	1.1	2	23	593	615	592	615	0.94
6	14	0.0011	0.082	13.4	0.6	1	22	620	641	620	644	0.90
7	14	0.0071	0.52	10.8	0.9	2	23	658	680	657	680	0.95
8	14	0.0032	0.23	11.9	0.0	2	22	686	706	685	706	0.96
9	14	8.4e-05	0.0062	16.9	0.2	1	23	762	783	762	783	0.98
10	14	2.4e-05	0.0018	18.6	0.7	1	23	789	811	789	811	0.98
11	14	0.0021	0.15	12.5	0.7	1	23	833	855	833	855	0.96
12	14	0.00043	0.031	14.7	0.6	1	23	890	912	890	912	0.98
13	14	0.062	4.6	7.9	7.4	1	23	918	940	918	940	0.98
14	14	0.002	0.14	12.6	4.1	1	21	946	966	946	971	0.93

Sequence Information

Coding Sequence: ATGATAGGGGACTTTGACGACGATACACATTTCTGTCTCAAATGCCATGCCACCATCATCGGTCTTGACAATTATGTGAATCACCGAAAAActggatgttcaaaaaatgttgTCGACATCCCAAAATCTCCATTACCTAGTCAACTCTTGCCACCTGATGATTCATTCAATCTAAAAGCAGACGACTTTTTCTCGTCGCTTGAATTGCAAAGCAGCGCCAAGAAATTGACACCTTCCAGTTCAGGAAAAAACTTTAGTGGAATCTTAACTAGAAGCAAAACAACAGCTGTTATTCAAGCATCAACATCGCAAAAAGAACCAACGCAAGAAATTCCTCAGTCTAAATCTGGGAAAAATGTTTGGATTGGAGGACATCAGTTAAAACTAGGATCTGGTGATAATcaatcaaaattgataaaagcaGTAGATAATCTTGAAAGACGCAAAGAAGAACCaccaaaaattaatgtttatgATGAAAGCGATGTTGAATCTGAAGAGTATGATTATGATGTTGATGAGTCTTCAGATGAAGATAATCATGACGCACCTCCAAGGAACCATACTGGAGGTAAATGGAAACCATCGTCTCCCATTCAATGGAACAGATTACAAGATTGGAATGTTCCACCTCCTAATTACACTGGAGGTAAATGGAAACGAACATCTCCTCCTCCATCGCACACTAAAGGTAAATGGAAACCTTCGTATCCTCTTTCACCTAAAGAAACTTATGATTTTCCACCACCAAGTTTCACTGGAAGTAAGTGGAGTCAGTCAAAAGCTAAACAAGATTTCAATGCCCCCCCTTCGACTCATACTAAAGGCAAATGGAAACCAGACGAAGATCTTAAAGACGACTCTtccaaatttaaatcaaaaactaaaaaagacGATGAGCTGTCACCGTCATACAGTGGAAAATGGAAGCCAAGTTCTTTGGAAATTCCAGCTCCAAACTATACTAAAGGCAAATGGATCCCAAGTGAAGATCCTAAAAAAGCTTCTGCAAAAATTACTGACGATTCTCCATTCCGTAAATCTAGTGGAACCGTTCAGTATTGGTGTCGCCAATGCAACAGAAGATTAGCTTCTAAAATTGTCTATGAGAGACATTTAAAATCAGAATTACATTTCAAGCGAACTCTTCGAGATAAAGAATTTGATGATAATGTATCAATGTTGAGTGAAAAGCGACACAAAAAGAAGACAGAAGTGAATGAAAATGACtcaaatgttaatttaaaGAAACGAAAGcggaagaaaatttttgttaaatgtgaAGTTTGCAATTCAAAAGTTAACAAACTACTAATGGGCAAACATTTAATTTCTCATTATCACTGCCGAAAAGGTGATATAACAACTGCTGTAGCTCGACAAATGGTTCTTGAAAATATAgctgaaattattttacaaagtCCATTTCAGTGTGGCAATTGCAAATTCTATTTCAACCACCATAAGGATTTTTTAGAACATTGGCTTTCAAGATACCACTCTGCTAAAGCAGAGATTCGAAGTGGTTATTTCTGGTGTTCTCTttgcaaattcaaaaattcggATAGTGCAAAAATGTATTTGCATTTAATATCTGAAGAACACGAAGTTGTCGTTTCTGTTATCAATCGCTCAGTACCCATTGttgtaaaaaaagtaaatccAATAAAATGTGAAGAATGTAACGAAGAATTTTTACTCAATGTTGCGTTAAAAAAACATTGTCAAAGTGAAGGTCACAGCTCGCAAAAtttaaacgcaaatatgaataatttaatttgtacGAAATGTCGACAAGTCTTTAGATCTAACATCTCTTTGAAACGGCACAAAGAGAGAGCTCATGGCGATAGTGTATTTATTTGCACTGTTTGTGAGAAGAATTTCAAGAATAAAGAAGAAGCCAAAATTCATAGAAATAGTAGCGAACATAGATATAAAATGTTGGcaagaaaagaaagcaaagaatgGAAATGTAATTACTGTAATGAAACATTTCAAGCTATGTCAGGATATAAAGAACATCTTCGACAAAAACATGAAGAATTTAGTTCTaaATGTGGTCAATGCGGTGCGACTTTTGCCTTAGCCCAAGAGCTTACCGTTCATTTGAGAACAAAATCTTGTAGTTTTGAGGAAACGTTTGATAATGTTAATTCTTGTGATAAATGTCCGTTTTCATCGAATTCAACTTCAGAGCTTTTATTTCATAAAGTTTTACATACTGAGCCATTGTTGGTTTTTCCAGAGACAAGTGattcgaaaaaaaaacctCAAGCACAGTATAAATGTCCACTTTGTGGGAAACTATTCGTCAAAGCTTCATTGCAAGCACATTTGAGATTACACACGAAAGAAAGACCTTTTGTTTGTTCAATTTGTAGCAAGGGATTTGTTAGAAAGAATAATTGGAAACTTCATGTGCGAAATCATGAGCGCAAAAAGGCAAACAAAATAGAAGAAAAGCAAGAGTCTGAAGTTTGTGGAAATCGTCCGTTTCTTTGTTCGACATGTGGAGCGAGCTTCGGAAAAAAaaaaattcTTCAGCAGCATATGATGACCCATTCGGGCAAATTATGCAAATGCCCTAAACTGGGATGTATTTTCGCTGCCAGAAGTATGGCTGAATTGAAAATACATTTTGAAACACATTCCGATGTGAAGAATTATGCTTGCAGCATCTGCGAATATCGAGGCAAAACCCAACAGCAGCTCAAAAGtcatttaAAAGTACATGGCGACTCCAAGAAGTATTCCTGCACAAAATGCTCATTTTCAGCGAGGACTTTGTGCCATTTGAAACGACATACACGCCTACATACAGGCTCTAAACCTTACAGCTGTCCACATTGCACttataaatgcaacacttTGGAAAATCTGCGTAAACATGTTTTAATGACTAACAAACATTGGGGGAAGTGTATTTATGAATGCAAATTCTGTGAAGAATCGCCGTTTCAAAGCAATTTTgctaaagaattcaaaacgCATTTAGTCACACATCATCCCCAGATTTTTAAAACTGGACGCGAAGCTACTAGTTTTGTTGCAGGGATTTATGACGGTCAAGACGATTATACTGAATTTCCTTCAGATGATATTATCGATACAGAGAAAAATAGTCCTGTCCagccaaaaattattattcttcatCAGGGTGAAATCGAAGGGAATCAAGATCCAGTTGTAACTGCTTCCAGTAGTCATGAAGAAGTAAACACCGATGAGATATTTCCAATGTATATTGTATCTAAGGATGAATCAGTTTCCGGCGACAATCTTACAGAATCTTGGAATGTGGTTGGCAGCTATGACGTCGAGGAGTCCGGTGCTTTAGTTCCTTTCAACAGTGATAACGTTCTTTTCCAGggtcatttttaa
Protein Sequence: MIGDFDDDTHFCLKCHATIIGLDNYVNHRKTGCSKNVVDIPKSPLPSQLLPPDDSFNLKADDFFSSLELQSSAKKLTPSSSGKNFSGILTRSKTTAVIQASTSQKEPTQEIPQSKSGKNVWIGGHQLKLGSGDNQSKLIKAVDNLERRKEEPPKINVYDESDVESEEYDYDVDESSDEDNHDAPPRNHTGGKWKPSSPIQWNRLQDWNVPPPNYTGGKWKRTSPPPSHTKGKWKPSYPLSPKETYDFPPPSFTGSKWSQSKAKQDFNAPPSTHTKGKWKPDEDLKDDSSKFKSKTKKDDELSPSYSGKWKPSSLEIPAPNYTKGKWIPSEDPKKASAKITDDSPFRKSSGTVQYWCRQCNRRLASKIVYERHLKSELHFKRTLRDKEFDDNVSMLSEKRHKKKTEVNENDSNVNLKKRKRKKIFVKCEVCNSKVNKLLMGKHLISHYHCRKGDITTAVARQMVLENIAEIILQSPFQCGNCKFYFNHHKDFLEHWLSRYHSAKAEIRSGYFWCSLCKFKNSDSAKMYLHLISEEHEVVVSVINRSVPIVVKKVNPIKCEECNEEFLLNVALKKHCQSEGHSSQNLNANMNNLICTKCRQVFRSNISLKRHKERAHGDSVFICTVCEKNFKNKEEAKIHRNSSEHRYKMLARKESKEWKCNYCNETFQAMSGYKEHLRQKHEEFSSKCGQCGATFALAQELTVHLRTKSCSFEETFDNVNSCDKCPFSSNSTSELLFHKVLHTEPLLVFPETSDSKKKPQAQYKCPLCGKLFVKASLQAHLRLHTKERPFVCSICSKGFVRKNNWKLHVRNHERKKANKIEEKQESEVCGNRPFLCSTCGASFGKKKILQQHMMTHSGKLCKCPKLGCIFAARSMAELKIHFETHSDVKNYACSICEYRGKTQQQLKSHLKVHGDSKKYSCTKCSFSARTLCHLKRHTRLHTGSKPYSCPHCTYKCNTLENLRKHVLMTNKHWGKCIYECKFCEESPFQSNFAKEFKTHLVTHHPQIFKTGREATSFVAGIYDGQDDYTEFPSDDIIDTEKNSPVQPKIIILHQGEIEGNQDPVVTASSSHEEVNTDEIFPMYIVSKDESVSGDNLTESWNVVGSYDVEESGALVPFNSDNVLFQGHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -