Lory000066.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- ZNF711_1
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:328083-338887[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.7 1.2e+02 3.3 1.0 1 21 39 59 39 60 0.94 2 23 0.0078 0.57 10.7 0.6 3 23 68 89 67 89 0.95 3 23 0.0099 0.72 10.4 1.7 3 23 95 115 94 115 0.97 4 23 0.017 1.2 9.6 4.7 1 23 121 144 121 144 0.96 5 23 2.1e-06 0.00016 21.9 1.4 1 23 149 171 149 171 0.98 6 23 2.7 1.9e+02 2.7 0.6 1 19 189 207 189 207 0.94 7 23 0.001 0.075 13.5 4.0 3 23 238 258 236 258 0.96 8 23 0.11 8.4 7.0 2.2 2 21 264 283 263 286 0.82 9 23 0.088 6.5 7.4 1.8 1 23 292 315 292 315 0.96 10 23 7.1e-05 0.0052 17.1 1.6 3 23 323 344 321 344 0.95 11 23 2.1e-05 0.0015 18.8 3.2 1 23 349 372 349 372 0.96 12 23 0.38 28 5.4 2.0 2 23 383 401 382 401 0.75 13 23 2.9e-05 0.0021 18.3 0.5 2 23 408 430 407 430 0.96 14 23 0.0022 0.16 12.4 3.0 1 23 436 459 436 459 0.94 15 23 3.3e-05 0.0024 18.2 1.5 1 23 473 495 473 495 0.96 16 23 0.00027 0.02 15.3 0.9 1 23 543 566 543 566 0.95 17 23 0.76 55 4.4 2.4 2 23 582 600 582 600 0.89 18 23 0.00036 0.026 14.9 1.9 2 23 635 657 634 657 0.94 19 23 0.1 7.3 7.2 0.5 1 17 671 687 671 688 0.92 20 23 0.079 5.8 7.5 3.5 1 19 699 717 699 719 0.95 21 23 9e-05 0.0066 16.8 1.3 1 23 756 778 756 778 0.98 22 23 0.039 2.9 8.5 0.1 2 15 1216 1229 1215 1239 0.86 23 23 0.9 66 4.2 0.4 1 23 1293 1319 1293 1319 0.93
Sequence Information
- Coding Sequence
- ATGGATACGTACTTCCGAACAAAGATGGAAGACAGAAGATTCTATGTTATGCCCGATTTTTCGTCAGCGAATCATCAGTTTGTGAATGCGAATGAGGAAGTTGGTATTCCTCATTACAAATGTATGCGATGtgaacaattatttataagtAAGTTTGTATTTTATCGACATATCGAAAAAGGAAAATGTTATATTAATAATTGCGATATGTGTAATGCTACTTTTAGTaaaaacagtgaattttattatcattattcaGTCGAACATACTGATCGAgctatttgtaatttttgtttccgGACTTTTATGTATGAGAAGAATGTTAAAGAACATATGATGAGGCATTTGGATCAGTTTAGACATAGGTGTGAACAATGTAATAAAGGATTTTATACAATAAGAGAGTATAGGAACCATTATAAGAATAGACATATGGGAATTAGGCATAAGTGCGATGTTTGTGGCAGAAGTTTTGCTGatgaatattattttagaaGACATATAGCTACGCATGAGCAAGCAGTCGATGATTTTAAACTAATTCGCCGAGGAAAAGTATTCAGTTTTGAATGTCGACAATGTCATTTGATATATCCGACTTATGAGGAATTTCTCGATCATGATCACTACAAAGAAAGACCGCAAGAAGTCGATCCGAGTCCACCTTGCCCATCCAAACGAACATTGATAAAAGACATCAAAAAGTGGGATTGTGATCTTTGCGATAAATCTTTTCGATGCAAAAGTAATTTCAATCGTCATCGTATTCGTCATTTTCCACCAAAAATCAAATGTCCAAAATGTGATAAATTGTTTTATGAGTTTTCTCTAGTGAAGCACCATTACGATTTTTCCCATGGGAATAAACAGACTTTTAAATGCGAAAAATGTGATtatgaaactgatttaaatAGTTCGTTGAAATGTCATATGATAAGTGCGCATACAAAAGAATTTCCACATTTGTGTGATATTTGTGGCAAAGgatatgtgaaaaaatatcaattaaatcAACATAAGAAAACAGCTCATGAAGGGTTTGAACACATTTGTGAACATTGTGGCAAAGGATTTAAATATTCGAATGGATTGAGAACACATTTAAAAACGATACATGAAGAGCAAGCAAAAACTAAACCTTTAAAAGAATGTCATATTTGTGGAAAAACTGTTCGTTATTTAAATGACCACTTACAAAAGCACAATGGAAAATTTGCTGTTGTTTGTGAATTATGTGGCAAAAAATTCGcttatagaaaatatttacaagaaCATATTCAACGCAAACATACAAATGAAAAACCATTTCACTGTACAGTTTGTCGGAAAGATTTTGTAACAAAAGAAGAATTGAAGATTCATTTTGAAAGGAAACACAAGAATCCTAAAGTTAATGCCAATGATGAGAAGAAGAAATTTGCATGTCGTATTTGTGGCAAACGATTTACCAGAAacgaatatttcaaaattcatgAACAAAATCATAATGAAGATCAGAAAGCATTCAAATGCAAAGTTGacgattttaaattaattagtcGAAGTGAAGGATCCAGTTTTGAATGTCAACATTGTAAATTCGTGCATCCGACTCGCACAGACTTTTTCGATCATGAATACTGCAAACATATTTGTGAACATTGCGGCAAAGAATACAGTTATATGAAAGGATTATTGGCACATATAAGAGAGGTACACGAAGGACAAAAACTGAAGCAAAAACCAAAACATAAACCATTAGAACAATGTCATATTTGTGGAAAAGaagtgaaatatttgaatttacatCTTAAGACGCACGATGAAgcaaatgttattttttgtgaattgTGTGGACAAAAGTGTGCTGCTTATGGATATTCAGATCATGTTAAACGTAAACATACAAACGAAAGACCAATTCAATGTTCGGTTTGCAACAAACGATTTGTGAAAAAACGAGAATTGAAAGTCcatttcaataataaacataaaaacccGAAGTTGAGTGTCAACGACGAGAAGAAGAAATTTCAATGTCGAATTTGCAACAATCGATTTACTACGAAAGcatttttgaagatttataTACAGAATCATAATGATCGGAAAGCTTACAGCTGCACCGTCTGCATGAAATCTTTTAAATACAAACGAAACTTAGATCAACATAATTGTGAAGTTCGAAATGAAGAATTGCAACAAATATTCGATGAAGACTCCAcgataaaaattgaagaaactgaACTATTagatatatcaaataatatcCCAATCAccaatcaattttattgtcCAATTTGTAAACGAGAATTTCAGTCTTTTCGTGGATTACAAACTCATCAGCGAGTGCACAATGTCACTTGTACAAAATGTGGTGTTTACATACTTGATGGAAAAATTAgacgaagaaaaaaatcaaaacgaaaattttattGCCTTCTTTGTGACAAACCAAAATCGAAAACTTTTCTAAGAAAATTAGAAGATGACAATCAAAAACAGATTTCTCTTTTGGAAAAAGCAGCAAAAGAACATAATTATTTTGCAAAAGATGTGATTTTACCAATTCACGTTTTAGCTAGTTTTGGTAATGATTCAATCGAATTGAAAGAAGAGCCAATCGATGATGAAAACACTGttgttaaaattgaaactgaTCAAAAGTTACAAGAAGTTTTATTAGATTTAGATTTATCAGAAGCTTTGATTgatgaaatagaaaaaacaagaatGATAGTAGAAAAATGTGATGAAGGACAAAGTGATAGAGAATTTGCATCTGAAGATATAAAcaaagaaattgaatttgaaaagaaagaagaaaacgGATTTGACTTTAGATCGCAAGACGAGGAAAAAATGAGACAATTAGAAGGAAAGAAAACACAAACATTATctgaaaatgattcaaaaagaACTCCAAGATTGGAAAATGAATCCAATATTGAGCAAGAAACTCCTATAATTATTGCAATTGATGAATTTCCATCAGTTGGAGAAGAAATAAAGAGTTCTTCATTATATGAGGAAAAAATCGGAGAAGAAACATTCGCCTCTGAAGAATCGACTGAAGAAATGAGTCGAttagaagaagaaaattttgtagacAAGTGTTCCCAAGAATCGCAAAAtgtttcaagtattttttttcctaaagatCTTTCAACTTCCAAtgcttcaaaaatcaatattatcGATGTAAGAAATATAGAAACATCTTCAACAATGAATTCagctgaaaattttattggtaTTAGAAAGAAATCTGAAACTTTATCATTTCCTAAAATTGATTCATCAAATCATGGATATCATCTCAAAGATACTAAATGCTCCTGTCAACAAGAGTTTCATTCACTTTATGATTTTACATGTCATATTCGATCAAATCCAACAATTTGTTGTGAattttgtggaaaattttttcgtttatGTAGTACAAAAGATCATTTAGCACTTCATAAGCTTAATAAAGAGCCAAAAGCTGATAAGCAACCAGAACCTAGCAATCAAACAAAACCTAGTCTTGAGCCAAAACCCAATAATCAACTGGAACCTAATAGAGAGCCAATATTTGATAATCAGCTTAATAACCAACCAAAACCTAGTGATCAATCGAAACCTAATAAGCCaccaaaactcaaaaataaattgaactCGACAAGATGTAACCTTTGTGGAAAAGTGTTTAAAGTTaaagaaatgtttttgttaGATAATCATATTGAAATCCATCATCTGGATGACACAGAATGTCCAGATTGTCGAGAAATATCTAAATCAGTCGATGACGTTACGGAAAATCTAAGAGTTTGTTGTccaatttgtgaaaaatttattccCCTATGTGGTGCCAGACATCATTTAGCATTTCATAAAGCAATTGATCCAAAATATGCTTGTAAATTTTGTACGATAcctaaaaaagtttttgattttctatatGATTTAATTTTGCATTATAAGGAAATGCATGGTTTGAAAATAGATAACGAACTAGAATTCGAAAAAGttcctgaaaaatttaaattcctAGACGTACTAGAATCAGAAGaagaagaattagaaaaaggaagaaaagaaaaacgcaggaaattgaaaataaaagacagACCAAAATCaggagaagaaaaaaaaagaaaacgtAAATGTAAAACCTTCTATTACgggaagaaaaaaagaaagtacAAAAAGGGATTCACCAGAAGAAGAAAACAGGAAGGAGATCGAGAAGGAAAGGATAGAGCAGATGAGAAGGGAGGAGATAAAGTTGGAGAAGGAAAGGATAGAGCAGATAAAATTAAAGACAAAGAAGCAGAACATCAACAACAAGAACAATGA
- Protein Sequence
- MDTYFRTKMEDRRFYVMPDFSSANHQFVNANEEVGIPHYKCMRCEQLFISKFVFYRHIEKGKCYINNCDMCNATFSKNSEFYYHYSVEHTDRAICNFCFRTFMYEKNVKEHMMRHLDQFRHRCEQCNKGFYTIREYRNHYKNRHMGIRHKCDVCGRSFADEYYFRRHIATHEQAVDDFKLIRRGKVFSFECRQCHLIYPTYEEFLDHDHYKERPQEVDPSPPCPSKRTLIKDIKKWDCDLCDKSFRCKSNFNRHRIRHFPPKIKCPKCDKLFYEFSLVKHHYDFSHGNKQTFKCEKCDYETDLNSSLKCHMISAHTKEFPHLCDICGKGYVKKYQLNQHKKTAHEGFEHICEHCGKGFKYSNGLRTHLKTIHEEQAKTKPLKECHICGKTVRYLNDHLQKHNGKFAVVCELCGKKFAYRKYLQEHIQRKHTNEKPFHCTVCRKDFVTKEELKIHFERKHKNPKVNANDEKKKFACRICGKRFTRNEYFKIHEQNHNEDQKAFKCKVDDFKLISRSEGSSFECQHCKFVHPTRTDFFDHEYCKHICEHCGKEYSYMKGLLAHIREVHEGQKLKQKPKHKPLEQCHICGKEVKYLNLHLKTHDEANVIFCELCGQKCAAYGYSDHVKRKHTNERPIQCSVCNKRFVKKRELKVHFNNKHKNPKLSVNDEKKKFQCRICNNRFTTKAFLKIYIQNHNDRKAYSCTVCMKSFKYKRNLDQHNCEVRNEELQQIFDEDSTIKIEETELLDISNNIPITNQFYCPICKREFQSFRGLQTHQRVHNVTCTKCGVYILDGKIRRRKKSKRKFYCLLCDKPKSKTFLRKLEDDNQKQISLLEKAAKEHNYFAKDVILPIHVLASFGNDSIELKEEPIDDENTVVKIETDQKLQEVLLDLDLSEALIDEIEKTRMIVEKCDEGQSDREFASEDINKEIEFEKKEENGFDFRSQDEEKMRQLEGKKTQTLSENDSKRTPRLENESNIEQETPIIIAIDEFPSVGEEIKSSSLYEEKIGEETFASEESTEEMSRLEEENFVDKCSQESQNVSSIFFPKDLSTSNASKINIIDVRNIETSSTMNSAENFIGIRKKSETLSFPKIDSSNHGYHLKDTKCSCQQEFHSLYDFTCHIRSNPTICCEFCGKFFRLCSTKDHLALHKLNKEPKADKQPEPSNQTKPSLEPKPNNQLEPNREPIFDNQLNNQPKPSDQSKPNKPPKLKNKLNSTRCNLCGKVFKVKEMFLLDNHIEIHHLDDTECPDCREISKSVDDVTENLRVCCPICEKFIPLCGARHHLAFHKAIDPKYACKFCTIPKKVFDFLYDLILHYKEMHGLKIDNELEFEKVPEKFKFLDVLESEEEELEKGRKEKRRKLKIKDRPKSGEEKKRKRKCKTFYYGKKKRKYKKGFTRRRKQEGDREGKDRADEKGGDKVGEGKDRADKIKDKEAEHQQQEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -