Lory007146.2
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- Prdm15
- Assembly
- GCA_030157265.1
- Location
- CM058051.1:15100323-15102895[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.93 68 4.2 0.4 2 23 211 232 210 232 0.95 2 12 6.6e-06 0.00049 20.4 2.9 3 23 241 262 240 262 0.96 3 12 0.00029 0.021 15.2 1.3 1 23 350 372 350 372 0.98 4 12 0.0011 0.084 13.3 6.4 1 21 376 396 376 397 0.95 5 12 0.00033 0.024 15.0 1.7 1 23 402 425 402 425 0.91 6 12 2.4 1.8e+02 2.9 5.1 1 19 429 447 429 450 0.93 7 12 4.9e-06 0.00036 20.8 1.0 1 23 460 482 460 482 0.98 8 12 9.6 7e+02 1.0 2.5 2 23 496 517 496 517 0.88 9 12 0.00013 0.0097 16.3 1.5 1 23 522 544 522 544 0.98 10 12 4e-05 0.0029 17.9 3.5 1 23 550 572 550 572 0.98 11 12 2.4e-06 0.00018 21.7 1.0 2 23 580 602 579 602 0.95 12 12 4.2e-05 0.0031 17.8 0.4 1 23 613 636 613 636 0.98
Sequence Information
- Coding Sequence
- atggATAGTTCTAATCAATTCATCAAGATAGTGAACGAAGTCCTATCTGTAGATTGCTGCATGATTTGTGGCAAAAATCATAACCTCGAAAACTGCgattacataaaaattaccAACCATGTACCTGACACTCCAATTCCATCAAGAGCTAAACTAACATTACCATCATTTCTCGAAATCCAAATTTTAAGTGATGGTTCACCCTCTATTCTAACCAAATCTTTGATAACAAAAGGCACCCAATTCGGGCCATTTCAAGCTGAGAAACTACAAAACCTAAACCCATCAATCttatttccattaaaaattttcacagctgatgaaaatcaaaattgtctttatttagataataacaatgaaaataaatgtaattggTTGATGTATATAAGTGCTGCTGAAACAGCTGAAGAACAAAATTTAACTTGTTATCAGAATAGAggtgaaattttttatgttgcgATTAAAGATGTAAATGTTGGAGAAACGTTAAAAGTTTGGTATTCACCCTATTATGCTTTTAAAATGAAGAAAACTGTTTTACCGACAAAAAATCCTGATGATCCTTTGAAAAATGTTGatgttaattctttgataaaaaagcaacaaaaaatCATGGAACGGAAGTTATGGACGTGTAAATTTTGTAGTCAGACGGAAACTACTATTGTTGCTTTTGCAAGACATATCCTGAAACATTATACAGCACAGCACAAAAATATGTGTgaagtttgtaaaaaaacgtTCGGTTCGAAAAAAcatTTGAAAAACCACATGAAAATCGTGCATAAAACCTTCTTGAATGTTTTTTCTGTGAAACCATCAACAAAAGAAGTTGGGTCAAAAGTTTTGGATAAAGATGCCCCTCTTGGGGGTCCTTTACTAAACGATATGTTCACTGATAGTTCTGATTTAAACCAATTCGATCTGAGTCTAGACAACCAAAACATTCTGTTAGATAATGACAACTTaacagttgaaaattttttaaatgagaatGTAAAAGACTTGGATCATTTCAATTTCGAAATTGACgataatcaaaaacaatttgtttGCGATATTTGTCTAAAACAATTCACCAAAgcgaaattattaataatccaTTTAAAACACCACACCGGCGATTATATGTGTcacaaatgtttgaaaattttctgtcgacgcgaaaatttaaaatcgcACATTTGCAATACGACAGTACGACATCGTTGCATTTTATGCGACAAAACTTTCATCCAGAAAAAATATCTATCAAGACATATCCAAGCCGTccataatcaaaaatatcattGCGTCTCATGCAAAAAATCCTACCATTCAAACAAAGAACTCCTCGAACACAACTGCAATAAAATTCCTGAAACAGAAAAAGAGAAATTCATATGTCCCATTTGTGATAAAGTTTTCTTCCGCGATTTATAcctaaaaaaacatttaaaaacacaCGAACcgaaaattaaacaaaataaaataaatatcgaTGCGACTTGTGAAATTTGTGGCTTGCATTTAGAAAATCGCAATTCGTATTATTTCCATAAGAAAAAACACGAACAACCAAGTTATCAATgcgaaatttgtaaaaaaaagtttcatagATTGGATGTGCTCAAAGAGCATGTTTTGATTCATGAAGAAATAGCAAAATTTGAATGTGAAATTTGTCAgaagaaatttaaaagtaaGAAAGTGTTGAATAATCATAAGAAGAAGCATAATGGAAGCGGCGAAATGTTGGAGTGTgagatttgtaaaaaaatgtttggaaGAAGACCGAATTTGAATAaacatatgaaaaattttcattcaaagaGTCGGCTTCAACTTGAGGAGTTTTATAAATGTCCGATTTGTAACAAAgcgattaaattaaaaagttcgGTGTTGAGACATTTGAGGAAAGTGCATGGAGATGTGGGAAATGTTGATTTGAGTTCTATCACTtctaaagttaaaaataatgaagagAAGACTAAATCTAAAGAAGTTTGTTTATCGATTCCAGATTTAAGCGAgaattatcaagaaattacTTTAGacAAAAATGCGTATATTTTGGATAATGGTACAATCGTGCAGCCTCAAGGCGACTCCGACAACGTTATAATTTACGTATTAGACCAAACTTTTtga
- Protein Sequence
- MDSSNQFIKIVNEVLSVDCCMICGKNHNLENCDYIKITNHVPDTPIPSRAKLTLPSFLEIQILSDGSPSILTKSLITKGTQFGPFQAEKLQNLNPSILFPLKIFTADENQNCLYLDNNNENKCNWLMYISAAETAEEQNLTCYQNRGEIFYVAIKDVNVGETLKVWYSPYYAFKMKKTVLPTKNPDDPLKNVDVNSLIKKQQKIMERKLWTCKFCSQTETTIVAFARHILKHYTAQHKNMCEVCKKTFGSKKHLKNHMKIVHKTFLNVFSVKPSTKEVGSKVLDKDAPLGGPLLNDMFTDSSDLNQFDLSLDNQNILLDNDNLTVENFLNENVKDLDHFNFEIDDNQKQFVCDICLKQFTKAKLLIIHLKHHTGDYMCHKCLKIFCRRENLKSHICNTTVRHRCILCDKTFIQKKYLSRHIQAVHNQKYHCVSCKKSYHSNKELLEHNCNKIPETEKEKFICPICDKVFFRDLYLKKHLKTHEPKIKQNKINIDATCEICGLHLENRNSYYFHKKKHEQPSYQCEICKKKFHRLDVLKEHVLIHEEIAKFECEICQKKFKSKKVLNNHKKKHNGSGEMLECEICKKMFGRRPNLNKHMKNFHSKSRLQLEEFYKCPICNKAIKLKSSVLRHLRKVHGDVGNVDLSSITSKVKNNEEKTKSKEVCLSIPDLSENYQEITLDKNAYILDNGTIVQPQGDSDNVIIYVLDQTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -