Lory012053.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058055.1:10189083-10190655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.023 15.1 0.6 1 23 157 178 157 178 0.97 2 11 0.037 2.7 8.5 1.4 1 23 220 241 220 241 0.96 3 11 0.00016 0.012 16.0 4.6 1 23 247 269 247 269 0.97 4 11 0.0096 0.71 10.4 2.9 1 23 275 297 275 297 0.97 5 11 4.9e-05 0.0036 17.6 4.0 1 23 304 326 304 326 0.97 6 11 0.0024 0.18 12.3 7.3 1 21 339 359 339 360 0.92 7 11 3.2e-05 0.0023 18.2 3.3 1 23 370 393 370 393 0.96 8 11 2.1 1.6e+02 3.0 1.0 3 23 402 419 400 419 0.72 9 11 4e-06 0.00029 21.0 0.5 1 23 425 447 425 447 0.98 10 11 4.1e-06 0.0003 21.0 0.1 1 23 453 475 453 475 0.98 11 11 6.8e-05 0.005 17.2 2.1 1 23 481 503 481 503 0.97
Sequence Information
- Coding Sequence
- atgaCTTTAGTCAAAGGAATTTTAACATTTGATAATATACAAAAAGTATGCAAGATATGTTTAGAAGAAAAAACCGCAATTTTACCTTTGGACACAATCATTGCATTCAACGATCTAAATATCTTCATTAGCATTACTGAAGTTTTGACAAAAGTCACGTCTCAAGAGGATAGCAATAAAGATTTGCAATTAACAATAATCTGTGAAGACTGTTTGAACGATCTAAAAGCTGCTTATATTTTAATACTCAAATACGAAGAATCGAATCAACTCGTTCAAGAATTTCTAACAAATTAcgagaaaaaagaaataatatttgaatgcGAAGAGGATAATAATCATGAATCAGAAAGTGAGAGTGAATTTAGACATACTCGACGAATGCAACATCGTAAAAGACGTActagaaagaaaaaacttgaGAATTATGAAAGTAAAGATGAGAAAAATGTTACCAGAACTGATTTACATTCGTGTCCTATTTGTACTAAAGATTTCACAGCTTTAGAATTGAGAGAACACATTCAAACtcataaaactttaaaaaagtaTCTTAGCATTCcagagaataaaaaagtgtctCCGACGACTAAATTCTCAACTACTAGACATTTGACTACAGATaatgaaacaattttcaatcGCAAAGAAAAACTTCATAAATGTCCATATTGTAATTTGGAATTTCTTGTTGATAAATTCCGAGTCCATATTGATACACATCGACAACAGTGTGAGTTTAAATGTGACAAATGCGAACgagtttttaaaaaactcaaccATTTGAATACTCACAGAGTAAAGCATTTGAAAGAATATCCATTCAAATGCGAACAGTGCGATAAAGGATTTGTTATTAAACGCAATTATGATTGTCATATGCTTACTCATACTGACGATGAGTTACCTCATGAATGTCGGTTTTGTTTGAAACGTTTCTCAAATCCGGAACATCTCAATCGCCATCAGATCATCCACACAGAAAATGTAACATATTCTGTGAAATACCGAGTCTGTAAATGTCATCATTGTCTAAGGAGTTTTAAAGATAAAGAAGAACTCAAAACTCATGTTTGTGTACCTGTAGAACAAGCAGTCAATACAAGGTATCCTTGTAAAACttgtaaaaaagttttcaaacaTTCGAGTGGACTCTATAATCATAATAGGAATATTCACCGACTGAAAGGAGTCAAAACTTTATGCTCAGTTTGTGGGAAATatgtttcaaatatttataatcatatGATGCGACATACCGGAGAAAAACCATTTCCATGCAATCAATGCGAGAAACGCTTCATTTCTAAACCACAATTAAAGCAACATTTATTAGTGCATTCGGGATTAAAGCCATATGTTTGTAGTGTGTGTGCTAAAgcgtttaataatttatataatttacaaGTACATGAAAGGATACATAAAGGAGACAGGTGCCACATTTGTACAATTTGCAACAAAGGATTTTTAGAGAAAtcttacttaaaaaaacataTGAATGTGCATGCAAAACAAGAATAA
- Protein Sequence
- MTLVKGILTFDNIQKVCKICLEEKTAILPLDTIIAFNDLNIFISITEVLTKVTSQEDSNKDLQLTIICEDCLNDLKAAYILILKYEESNQLVQEFLTNYEKKEIIFECEEDNNHESESESEFRHTRRMQHRKRRTRKKKLENYESKDEKNVTRTDLHSCPICTKDFTALELREHIQTHKTLKKYLSIPENKKVSPTTKFSTTRHLTTDNETIFNRKEKLHKCPYCNLEFLVDKFRVHIDTHRQQCEFKCDKCERVFKKLNHLNTHRVKHLKEYPFKCEQCDKGFVIKRNYDCHMLTHTDDELPHECRFCLKRFSNPEHLNRHQIIHTENVTYSVKYRVCKCHHCLRSFKDKEELKTHVCVPVEQAVNTRYPCKTCKKVFKHSSGLYNHNRNIHRLKGVKTLCSVCGKYVSNIYNHMMRHTGEKPFPCNQCEKRFISKPQLKQHLLVHSGLKPYVCSVCAKAFNNLYNLQVHERIHKGDRCHICTICNKGFLEKSYLKKHMNVHAKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -