Basic Information

Insect: Latheticus oryzae
Gene Symbol: RREB1_1
Assembly: GCA_030157265.1
Location: CM058049.1:7639850-7647715[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00013 0.0095 16.3 0.6 1 23 77 99 77 99 0.99

2 16 0.00036 0.026 14.9 0.5 1 23 111 133 111 133 0.98

3 16 0.00085 0.062 13.7 6.4 1 23 139 161 139 161 0.98

4 16 0.32 24 5.6 0.0 1 21 221 242 221 245 0.77

5 16 0.027 1.9 9.0 3.5 2 23 251 273 251 273 0.97

6 16 5.3 3.9e+02 1.8 1.8 1 20 316 335 316 337 0.92

7 16 0.057 4.2 8.0 0.1 1 23 468 490 468 490 0.96

8 16 6.5e-06 0.00048 20.4 0.8 1 23 499 521 499 521 0.99

9 16 0.00066 0.049 14.1 3.1 1 23 527 550 527 550 0.97

10 16 0.00039 0.029 14.8 3.0 1 23 933 956 933 956 0.97

11 16 0.00044 0.032 14.6 0.5 2 23 1167 1188 1166 1188 0.97

12 16 0.1 7.3 7.2 6.3 1 23 1194 1217 1194 1217 0.97

13 16 0.01 0.73 10.4 1.2 1 20 1245 1265 1245 1266 0.95

14 16 0.098 7.2 7.2 0.7 1 23 1327 1350 1327 1350 0.94

15 16 0.013 0.97 10.0 0.4 3 23 1397 1417 1395 1417 0.93

16 16 0.006 0.44 11.1 5.9 1 23 1423 1445 1423 1445 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00013	0.0095	16.3	0.6	1	23	77	99	77	99	0.99
2	16	0.00036	0.026	14.9	0.5	1	23	111	133	111	133	0.98
3	16	0.00085	0.062	13.7	6.4	1	23	139	161	139	161	0.98
4	16	0.32	24	5.6	0.0	1	21	221	242	221	245	0.77
5	16	0.027	1.9	9.0	3.5	2	23	251	273	251	273	0.97
6	16	5.3	3.9e+02	1.8	1.8	1	20	316	335	316	337	0.92
7	16	0.057	4.2	8.0	0.1	1	23	468	490	468	490	0.96
8	16	6.5e-06	0.00048	20.4	0.8	1	23	499	521	499	521	0.99
9	16	0.00066	0.049	14.1	3.1	1	23	527	550	527	550	0.97
10	16	0.00039	0.029	14.8	3.0	1	23	933	956	933	956	0.97
11	16	0.00044	0.032	14.6	0.5	2	23	1167	1188	1166	1188	0.97
12	16	0.1	7.3	7.2	6.3	1	23	1194	1217	1194	1217	0.97
13	16	0.01	0.73	10.4	1.2	1	20	1245	1265	1245	1266	0.95
14	16	0.098	7.2	7.2	0.7	1	23	1327	1350	1327	1350	0.94
15	16	0.013	0.97	10.0	0.4	3	23	1397	1417	1395	1417	0.93
16	16	0.006	0.44	11.1	5.9	1	23	1423	1445	1423	1445	0.98

Sequence Information

Coding Sequence: ATGCAAGGGGTTGTCTTCATGCCTCAAAATCCACAGCAGGGCTCGCCGCCGCCAAATAACACTATAGTTACCGATATTACGATGGAAGCTGATTCTGACGCTCCCAAAGAACCAACTACAAACCAAAGCACTCAAAGCGACTCCGGCATTTTTTCTGCGACAAATTCCACAATGGAACCCGGCAATGAAACAGATAATCGTAGCGATTGTAGCTCGCCAGAACGCAAATACGTTTGTCCTATTTGCGAAACAATCTTAACATCTCAACATGAGTTTACTCTTCACATCCGATCTCACAACAATGAGACCGAAGTCCAAGACGATAAGGGCTTCACTTGTCGCATTTGCTTCAAAGTGTTGAGTTCGAGCTCTAGTCTTGATCGTCATGTTCTTGTACACAGTGGTGAAAGACCATTCCATTGTCGGTTCTGTGGAGATACTTTTACCACTAATGGAAACATGCACAGACATATGAGGACACACACTCATAAGAATGAGAGTTATGAATCGGATGCCAGTTCAGACAGTAATGTTAGTGGGAGTTCGAAAAGTActgaatttaataataataaagtggAATCGAAGAAGAGAAAATTGGAAATGAATGATCAGATGAAtaagaaaatcgaaaattcgAATGATAATGAAAGTCTACAGCATTATAAATGTCCAGTTTGTGATCGCACAGATTTTGACTCGATTGTTGCTTTGGAAGCACATCTTGAAGATAACCATCCAGATTATCCAGCCAAATGCAGTCAATGCCACCAACTCTTCCAgaataataaacttttaacAATCCATAGAAATACTGTGCATAATAATACGAAAAAGCACACTGTATCAGGATTCAAAGATTTGACTTTTGTCGATTTCTCCAGCGAAAAATTTCCACATATTGCACGATatgaatgtgaaaaaaatcttcacaCAGCTTCCGATGGATTCCAATGTAAGACTTGTATGAGAGCTTTCCCATGCCATAGTTCTTTGGAAATACACGAAAAAGACTGCATTTTGAGCTCATACAATAACGGATTAGACTTAAGCAAAGCGACTCAGATTTCTGAAAAAGACATTAGAAGAAATGAGTTTTTTTCAAGACTCAATCTTCAAGATAACTCTCCTGAGAAACTCATGCCGCAAATTAACGAAACGTCGAATAAATTGAGACAACAGCTTTTAGCAAAAGTGATGACAAATGATTCAACCAAAGATCTTGCTGACATACAATCTATTATTTCAATGACTACGAATGGAAGTCTTTTGCAGCAGCTACAAGCCAAAAACGAATTGAATCATAAAATTCTAGACTCTCctcaagaaaacaaaatagaaaatgaaGAAGAATCTCAAGATTTGTTTGCTTTagaattcagaaaaatgaaactgagGGGAGAGTTTCCTTGTAGATTATGTACTGCAGTTTTTCCTAATTTAAGAGCTTTGAAAGGTCATAATCGCGCTCATCTTAATGGTAACAATAACGGGATGTACAGATGTAACATGTGCCCACATTCATCTATTGATAAAGCTGCTTTGATAAGACATATGAGGACACATAACGGTGACCGTCCTTACGAATGCTCTCTATGTAATTATGCATTTACTACAAAAGCAAATTGTGAAAGACATTTGAGAAACAGACATGCAAAGACGACTAGAGAAGAAgttaaaaaagcaattattTATCACCCATCTGAAGATCCAACCAATGAAGAACTTAATAAACTCACCGCAAGAGATGATACGAGAAAACAAAATAGCGATTTAAGTCCTGAGAAATTGCACACTGCGACTCCGAAATTGTCAGACTTGAGAAGTATCATCCCGGATATAACAAAACCGGAAGTTGCGCCATTAATTCCAAATTTACTGAAAGAGTCACTTAATGTTCCTTTGTCTAAAGAACCACCGAAACTCTTCTCGAATATTAGCGATCTTATCCGAaacgaaaatttgaaatctctGAAAGAACACAGGCAACAAAATGGACAAATTTCTCCATTTTTACCTCCAAATTATAATTTCTCTCCAAAATCGTCCAATGTATCAACTCCTCATAATATTCCTTCCAAAATCCacgttaaaaattttgaagaactTAAAGAAACTAGTTTCGAAAGTCATTCAGATCCAGAGTGTGAAGAACAAGAAGAAGAACCAATGAATCTTGTGTTAGATTTGAGTAAAAAGAAAGATAATGATGagaagaaaatgaaaactGAAGCAGTCCCAGAAGATCTTTCAAAGAAAACACCAACTAGTCCTTCAATGCGAGACTTTTTCGCTCAACAGCTTTTAAAAACTCCTCCAAAAATTGACCCAGCAGCTTGGTATGCAACTTTGTACAGAAATAGCTTCCCTGGTTTTACTGGCTGGCCTGCGTTACCTTTAAACCCTCTCCTTTTTTCGTCTCTCCAAACTCCTCTTTTGGCACCAGATTCCCAAGATATAAAAGAACGCTTCCAAAGGTACCAATTATGTGGTGGGTCAATGATAAGCGATAATTTCGTTGAACGTTTCAAAAACTTCCAAAGTTCTTCAAATCCtgctttcaataattttaaacttgGCGATATGAAATCTGACACTGACATAAAGAAAACAGACGATTTACAGCCTTTGAGTTTGAATGTTGAGTCGAGTTTTGGAGATAACTTTAAAATGCATAGTCCAATTCAACAGCAATCTAAACCTGATATGACTCATTCACCAAATTCTGTAAAAATGGTGATCAAAAATGGTGTTTTAATGCCAAAACAAAAGCAAAGACGATACAGAACTGAGCGTCCATTCACTTGCGAACATTGTTCTGCTAGATTTACTTTACGCTCAAATATGGAAAGACATATCAAACAACAACATCCACAGTTCTGGTCTCAACGCCAAAGAGGTTTAAATAATCCAGGAAGAAAAACTCAAATGAAGCCAAGCTTCTGTGATCTCAGTATACCAAACTACGAGGTACCAAAGACTCAAGAGTTTGACGAAACCAAAGAACAGATTgatgaaaaactaaaatttgctCTATTGGCTCAACACTTACGAGTTAGTAAAGAAATTAAGAAAGAAGACGATGATGACTGTGCTCTTGTTATTGACGAGAACGCAGAAAAATCTGACAAGACTGAAGACAGCCAAAGAAACACAGAAGGTGGTTTTGAAAGAAATCGCATTTTAGAAGAGAAACTCAGAGAGTTGCAtgcaaaacaaataaaaaacgaatctaaaactaaaaatgaaGAGAATCAAGATTTAGTGCCGGTATCTCGGCTTTTGGACAATGCTTCTCAACAACAATtcaaagaatattttaaacGAGAAGGCGAAGAACCAGAAGTTGGTGGTGCTAGTGAGGAAGATGAAGAAGGTCTTGTCGCTAGTGGAAGCACAAGCGAAGGGAATGTCTCTGGAACTGATGAAAACAAGTCCGAACCAGAAACTGCTGCTCCTGTTAAAAAGAAGTCGGCATATTCTATGGCTCCTAACAGAGTCAGCTGTCCGTTCTGTAGTCGCAAATTTCCTTGGAGTTCTTCATTGCGTCGCCATATTTTGACTCACACTGGACAAAAGCCGTTCAAATGCAGCCATTGTCCATTGCTTTTCACTACTAAGTCAAACTGCGATCGTCATTTACTCCGGAAACATGGCAACAATGCTACAACAATTACCAACGACGTGGTCAACAACAACACTAACTACTTGATGAGAAATGTTCCAGAACGACCTTTCAAATGTTCCAATTGTCCCAGTAGCACCTTTTCCACTTATTCTAACTTAAAGAAGCATATTAGTTGCAAACATTCCACAAACGCTCAAGGCGACGACATTAAAGCTCAAGGTTATGAAGCTGGGAGCTCCGAAGATGAAAAATTACCATCTACAGATATTAAAACCGAATGGGACAATAATACTATTTCTTCGAATAAACCCGTAAACGAAATCTCAAATATTGTACAAAACTCAGATTTGCCATTCAAGTGTCATTTATGTGATGGTTCTTTTGCTGAGCGTCAAGACGCTTTAGATCATATCAAAGACAAACATTACGCTGAGTATGATTTATTGATGTCGAAAAATGCGTTAGACAACAATGCTACAACCCCAGAAGATGGCAATCATCACGAAgatgaagaaaatgaaatgaGAGGAAAATTCCCAGACTACTCCAACAGAAAAGTGATTTGTGCATTCTGTATGCGTAGATTTTGGTCAGCTGAAGATTTGCGAAGACATATGCGAACCCATACTGGAGAAAGACCATTCAGTTGCGACATTTGCAGACGAAGATTTACGTTGAAGCATAGCATGCTGCGTCACAGAAAGAAGCACAATGTGAATTTTGATAACGAAGTAGTTAACAGTGACGAAGATGTTAATAATGCTCCAACAAGTCTTGAAAAATTGGTAAAGAATGAAAATAACAACACTCAAAAAGACAAAACTGAAGAATCGGATGGAAACGAAGGAAGTGACTTAATAAGTAATTTACTGGGAATTAGGGATAGGGCTTTTATTGATAAGGTACTAACGGCATCTGCTGACGATGCCGCTAAGTTATTGGGTGTTAAGAACGGGATAAgagaataa
Protein Sequence: MQGVVFMPQNPQQGSPPPNNTIVTDITMEADSDAPKEPTTNQSTQSDSGIFSATNSTMEPGNETDNRSDCSSPERKYVCPICETILTSQHEFTLHIRSHNNETEVQDDKGFTCRICFKVLSSSSSLDRHVLVHSGERPFHCRFCGDTFTTNGNMHRHMRTHTHKNESYESDASSDSNVSGSSKSTEFNNNKVESKKRKLEMNDQMNKKIENSNDNESLQHYKCPVCDRTDFDSIVALEAHLEDNHPDYPAKCSQCHQLFQNNKLLTIHRNTVHNNTKKHTVSGFKDLTFVDFSSEKFPHIARYECEKNLHTASDGFQCKTCMRAFPCHSSLEIHEKDCILSSYNNGLDLSKATQISEKDIRRNEFFSRLNLQDNSPEKLMPQINETSNKLRQQLLAKVMTNDSTKDLADIQSIISMTTNGSLLQQLQAKNELNHKILDSPQENKIENEEESQDLFALEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKAIIYHPSEDPTNEELNKLTARDDTRKQNSDLSPEKLHTATPKLSDLRSIIPDITKPEVAPLIPNLLKESLNVPLSKEPPKLFSNISDLIRNENLKSLKEHRQQNGQISPFLPPNYNFSPKSSNVSTPHNIPSKIHVKNFEELKETSFESHSDPECEEQEEEPMNLVLDLSKKKDNDEKKMKTEAVPEDLSKKTPTSPSMRDFFAQQLLKTPPKIDPAAWYATLYRNSFPGFTGWPALPLNPLLFSSLQTPLLAPDSQDIKERFQRYQLCGGSMISDNFVERFKNFQSSSNPAFNNFKLGDMKSDTDIKKTDDLQPLSLNVESSFGDNFKMHSPIQQQSKPDMTHSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLNNPGRKTQMKPSFCDLSIPNYEVPKTQEFDETKEQIDEKLKFALLAQHLRVSKEIKKEDDDDCALVIDENAEKSDKTEDSQRNTEGGFERNRILEEKLRELHAKQIKNESKTKNEENQDLVPVSRLLDNASQQQFKEYFKREGEEPEVGGASEEDEEGLVASGSTSEGNVSGTDENKSEPETAAPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNNATTITNDVVNNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIKAQGYEAGSSEDEKLPSTDIKTEWDNNTISSNKPVNEISNIVQNSDLPFKCHLCDGSFAERQDALDHIKDKHYAEYDLLMSKNALDNNATTPEDGNHHEDEENEMRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNEVVNSDEDVNNAPTSLEKLVKNENNNTQKDKTEESDGNEGSDLISNLLGIRDRAFIDKVLTASADDAAKLLGVKNGIRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568293;
90% Identity: -
80% Identity: -