Lory004402.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058050.1:6367190-6368425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00077 0.057 13.9 0.9 1 23 142 165 142 165 0.95 2 8 3.9e-05 0.0028 17.9 1.4 2 23 194 215 193 215 0.98 3 8 3e-05 0.0022 18.3 0.1 2 23 219 240 219 240 0.97 4 8 8.3e-06 0.00061 20.0 3.1 1 23 246 268 246 268 0.97 5 8 1e-06 7.6e-05 22.9 0.6 2 23 275 297 274 297 0.94 6 8 7.9e-06 0.00058 20.1 0.2 1 23 303 325 303 325 0.98 7 8 0.00023 0.017 15.5 0.8 1 23 332 355 332 355 0.94 8 8 5.4e-06 0.00039 20.6 4.4 2 23 363 385 362 385 0.96
Sequence Information
- Coding Sequence
- ATGGAAATTGATATAACTAGTAAGTGTAGAGTGTGTTTAAGTGATAATAAACAGTTGCATTACTTATACAATGAGTTTGATCAAGGAATTACGTTAAAAGAGATTCTGACAACTACAACAGGATTCCAGgTTGAAGAAAATGATGGACTTTCACCCTATGTTTGCGAAAGTTGCACATCCATTcttgttgatttttataacCTCAAAACAATTTATGAGCAAAATGAAAAACAGATAAAAGCTTTAATGGATAAGAATAATGTAGataataaagaagaaaatgatgatgatgaagaagaagaagactGTATTACTATAAAAGTAGAAACCTACGATAGTGATAATGGCGAATCTGCTGATGATGTTAAAGGTGAAAATAATGAATCTCTTGAAGAAGGTTATGAATACCAAGAAATAAACACTTACACATGTCCGGAATGTGGCGAGTGTTTCCTCTATCAAACTGATATCCAAAATCACTTAGCCTCAAAGCATGACATAACAAAAGTTGATTACGATGAAATCTCTGAAGTTTCTTACTTGAAAGTACGAAAAGAAAATCAGATTGATTCAccaaataaatgtaaaatatgcAGTCAATCATTCAGTTCTGAAAAAGATTACAAAGAACATTTAGAAACTCATAAAAAGAATGTTTGTGATATTTGTGGTGTCggtttcataaaaaaatcgtaTTTGAAAGACCATCAAGAAATTCATTGTACAGAAAAACGTCACGTGTGTAATTACTGCAATAAGGCATTCAAACGAAGAACAGTTTTAGCAAAACATCGGAAAATACATACACATCCAAGACAGTGCATTTGTGAAATTTGTGGTAAAGCTTTTAATGACAAAGGAACTCTTAAAACACATATTATGCTTTTACATACCAGAGAGAGAAACTACATGTGTTTAATTTGTGGTGTGAAATTTCCTTTAAAAGGTACTTTGGAGAAACACATTAGAAGACATCAGAATAAAGAACGGGAATTTTTCTGTACTCAATGCCCGTTAGGTTATAGGGATAAATCAAGTTTAGATAGACATATTTTCGTTAAACATAGTGgtcaaaatatcaaatcaaCATGTAGGGACTGCGGAAAACAATACACTACAATGAGTAACTTGTTCAAACATATGAGGAATTGTCATAAAATTAGAATagattctgaaaatatttcttaa
- Protein Sequence
- MEIDITSKCRVCLSDNKQLHYLYNEFDQGITLKEILTTTTGFQVEENDGLSPYVCESCTSILVDFYNLKTIYEQNEKQIKALMDKNNVDNKEENDDDEEEEDCITIKVETYDSDNGESADDVKGENNESLEEGYEYQEINTYTCPECGECFLYQTDIQNHLASKHDITKVDYDEISEVSYLKVRKENQIDSPNKCKICSQSFSSEKDYKEHLETHKKNVCDICGVGFIKKSYLKDHQEIHCTEKRHVCNYCNKAFKRRTVLAKHRKIHTHPRQCICEICGKAFNDKGTLKTHIMLLHTRERNYMCLICGVKFPLKGTLEKHIRRHQNKEREFFCTQCPLGYRDKSSLDRHIFVKHSGQNIKSTCRDCGKQYTTMSNLFKHMRNCHKIRIDSENIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -