Lory010129.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- Zfpm1
- Assembly
- GCA_030157265.1
- Location
- CM058053.1:12498238-12501051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2 2.3e+02 2.5 0.1 2 23 7 28 6 28 0.92 2 15 2.5 1.8e+02 2.8 2.0 1 19 461 479 461 484 0.76 3 15 0.32 24 5.6 0.3 2 23 557 579 556 579 0.93 4 15 0.01 0.73 10.4 2.1 1 23 587 609 587 609 0.98 5 15 3.1e-05 0.0023 18.2 1.1 2 23 612 633 611 633 0.97 6 15 0.0018 0.13 12.7 1.1 1 23 639 661 639 661 0.98 7 15 5.8e-06 0.00043 20.5 4.1 2 23 668 689 667 690 0.95 8 15 1.1 79 4.0 2.1 6 23 704 721 702 721 0.95 9 15 4.1e-05 0.003 17.9 5.5 2 23 727 749 726 749 0.96 10 15 0.017 1.3 9.6 0.0 2 23 765 785 764 785 0.96 11 15 8.7e-05 0.0064 16.8 1.3 1 20 791 810 791 813 0.92 12 15 0.00023 0.017 15.5 0.5 1 23 821 843 821 843 0.99 13 15 0.0021 0.15 12.5 5.5 1 23 849 871 849 871 0.98 14 15 5.5e-07 4e-05 23.8 4.0 1 23 877 899 877 899 0.98 15 15 0.001 0.074 13.5 7.0 1 23 905 927 905 928 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAACCAACATATCCTGCCCTGTTTGTACATTGTACCTCAGACCAGGCATAACATTAAAAACTCATTTGAGCAGCCACCCAAAACAGAAAGTGATTGAAGCCCTCGTACGTCTTTCAGAAACAGGCGATGTTGAGAAAATCGGCAACTCTTCATCGCAGCCTGACGGCAGCTCGATTAGTTCACATACAGCGATAGTGAATCAGACTTGGAATCAAGGTAATTTAGTAAACATGCCTCCAAATCTTCCTCCTTTGCAAGGCAACCATGTCTTTATTTATCAACAAAGTATGAGCACGACGACTCCGCAACAGAACGTACTCAATGTTAACACTCCGTCTCAGCAATATGTTATTCCGACGATTTTAAATCCACAAATGATGCCTTATATTTACCAACAACAAGTCATCATGAGTGGATCATGTCTTTCCCCGATGCGGACGCTCCGGTTTGAACTACCACCTGCTACCTCTCAGGAAAATATAAGCGAATGTACAGAGATATCACCAAACGATGTAGAAGCGAAAAAAAACGATGAAACTGAAGAagacaaaaatgaaaaaaatgatgagGAGGAACAAGAGATTAATAATCCTGTGGTTTATGAAGTGGAAGAACTGCCAGAGGATAATACTGAACAAAGTCAAGAAGACGAAGCTTCAACTGATGATTTAAACAAAGCTTGTCAGACTCAAAGCAATTCGCCTCAGCCTTCAGTATTACAAGAAGAACCGGAAGGTTTAGAAGAGGCCCCGAAACAACAagagttttattttatgaatgaAAATGAGAATAACCAAGTGTATGCGTCAGTAGAATTGGCTCAAAATTACGAACCGAATCCGATTTACGCAGCTTCGAATATTTTACAATCGACTGATCAATTAGATTTTGTTGATATGGATGGAATGCATGTGgtaattaatgaaataaatgatTTCTCAACTAGCCAAATCATTTctcaagttgaaaattttgaaggtAATGGGCCTGACAGACCAGGAGTGTTAATGACAATCGGAGGAATGATTGAGAATTCCAAAGATGATTTTTTAGAGCAGAGAGATACTGAAGAAAGTATGTCTAGAGAGAGCTCCAATGTGAATATAAGAGCTGATGAAAGAATGCCTCCAAGAGGCGAATTATCCGGACAAGAAAGTATCGGAGGATCGAGTGATATCACCTGGAGTAGAGTCCAATACAATGAAAGCAGTTCTGGAATGTCAACGTCTTACGATCTTCTATCTAGAGAAAACTGGGAAGCTTCGGATAGTTCTGACGTTGAAGTTCCTCCTCTTCAAAGTCGCATTCCGCCAAAGTACCCTGAAGATAACGACACTCCAACTGTTGTCAGCTTCACCGGCCCTCCTCTCAATTTCAAATGTTCATCATGCGACGAAGCTTTTTCGTGTCTAACCGAAAGAAAAAACCacgaaattgaaaaacatccagaaaaacgaaaaatcaACCAAATTGGTACAGAAATTGGCAAAAATAAAGTCAAAAAACTTGttgtaaaattcaaagagaaaaaagaacCGGAAAGTTTCGATTTTAGtaataaacttaaaattgaaacatcAGTTGAAAGTGAAACTCTAACAGAAATAACAGATGATTCTGCAGTCAAAACTGATGAAAATTTATCAGTTGAATTAAAAACTGTCTGTCCCATTTGCGATTGTGTTCTTTTGAATTCCAAAGCTTTAAGAGAGCATAAAATTAGCGTTCATAATGTGACGGCTCAAACTCGACATAAATGTATGACTTGTGACGAACAGTTCCCGAACGATTATAAATTCTCCGAGCATTTACGGATCCATCCTTTAGAGTGTAAAATCTGTGGGAGGTTATTTTACAGACGTCAGAATATTCAGCTGCATATGCGAAGACATTTAGGTATAAAACCGTACAAATGTGATGTTTGTGAGAAATCGTTTTTGACTAAACAGAAGTTGGACGAGCATAGAAATATTCATACTGGGGAAGCACCGATTAAGTGTCCTTTATGTGATGAGACATTCCGTCGGCATTCTAATCTCGTCCAACATCGAAACCGGCATCacttaaatatcaaaaaaaaagtcaaagattatatttgtttttgtaaagaaGTGTTCCattctaagaaaaaattagcttGGCATAAGGAGATCCACGACGCTAAACCCAAATCCTGCACTcattgtaatgaaaaattcatacaTATGTCCAGTTTGACTCGACATATGCGGCGCGCACATAACGATAGATTTCTTCCCAATGGTCACAAAAACGCGGAAAATGTCGAATGTCCGATTTGTAAAGGAGTCTATTTGAAATCATCTCTTGAAGTCCATATACGTAACCACAGCGGTCAAAGACCATACACTTGCTTAATTTGCAACAAAGATTTCACAACCAAATGGAACTTGAAGTTACATAAATGGACGCACGCGTCCAGAGTGACTAAACCATTCAAATGCGATCAATGCAAAGGAGCATTTATTCGAGAATCGGATTATGTATCTCATATGAACTCGCACAAAAGCATAAGACCCTATACATGTAACCATTGCGGGGCTCAATTTATACGAAAATATAACTGCCAGAGACATGTCAAAGAGCATgagaatgaaaaaatgttcaattgtAAAGTATGCGGAAAATCGTTTCATAGATCGTACTATCTTAAAGATCATATGCGGATTCACAGCGGTTTAAGACCGTATTCGTGTCATATTTGTGGAAAAACTTCCACGACCAAGTCCAATCATAATAAACATGTACAAATTCATCATGCTAGAGAACCGGTCAGTACTGAGAATTAA
- Protein Sequence
- MDSTNISCPVCTLYLRPGITLKTHLSSHPKQKVIEALVRLSETGDVEKIGNSSSQPDGSSISSHTAIVNQTWNQGNLVNMPPNLPPLQGNHVFIYQQSMSTTTPQQNVLNVNTPSQQYVIPTILNPQMMPYIYQQQVIMSGSCLSPMRTLRFELPPATSQENISECTEISPNDVEAKKNDETEEDKNEKNDEEEQEINNPVVYEVEELPEDNTEQSQEDEASTDDLNKACQTQSNSPQPSVLQEEPEGLEEAPKQQEFYFMNENENNQVYASVELAQNYEPNPIYAASNILQSTDQLDFVDMDGMHVVINEINDFSTSQIISQVENFEGNGPDRPGVLMTIGGMIENSKDDFLEQRDTEESMSRESSNVNIRADERMPPRGELSGQESIGGSSDITWSRVQYNESSSGMSTSYDLLSRENWEASDSSDVEVPPLQSRIPPKYPEDNDTPTVVSFTGPPLNFKCSSCDEAFSCLTERKNHEIEKHPEKRKINQIGTEIGKNKVKKLVVKFKEKKEPESFDFSNKLKIETSVESETLTEITDDSAVKTDENLSVELKTVCPICDCVLLNSKALREHKISVHNVTAQTRHKCMTCDEQFPNDYKFSEHLRIHPLECKICGRLFYRRQNIQLHMRRHLGIKPYKCDVCEKSFLTKQKLDEHRNIHTGEAPIKCPLCDETFRRHSNLVQHRNRHHLNIKKKVKDYICFCKEVFHSKKKLAWHKEIHDAKPKSCTHCNEKFIHMSSLTRHMRRAHNDRFLPNGHKNAENVECPICKGVYLKSSLEVHIRNHSGQRPYTCLICNKDFTTKWNLKLHKWTHASRVTKPFKCDQCKGAFIRESDYVSHMNSHKSIRPYTCNHCGAQFIRKYNCQRHVKEHENEKMFNCKVCGKSFHRSYYLKDHMRIHSGLRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415357;
- 90% Identity
- -
- 80% Identity
- -