Lory006309.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- salm
- Assembly
- GCA_030157265.1
- Location
- CM058051.1:7624741-7631014[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3 2.4e+02 2.4 0.2 3 19 2 18 1 20 0.91 2 10 4e-06 0.0003 21.0 0.9 1 23 315 337 315 337 0.98 3 10 5.5e-06 0.0004 20.6 1.9 1 23 343 365 343 365 0.98 4 10 0.05 3.7 8.1 3.8 2 23 678 699 677 699 0.98 5 10 3.5e-08 2.5e-06 27.5 0.6 1 23 705 727 705 727 0.97 6 10 4.9e-05 0.0036 17.6 2.6 1 23 737 759 737 759 0.98 7 10 0.0074 0.54 10.8 2.4 2 23 1021 1042 1020 1042 0.97 8 10 0.062 4.5 7.9 1.6 1 14 1048 1061 1048 1062 0.93 9 10 1.1e-06 8.2e-05 22.8 4.0 3 23 1206 1226 1204 1226 0.96 10 10 1.6e-07 1.2e-05 25.4 0.9 1 23 1232 1254 1232 1254 0.98
Sequence Information
- Coding Sequence
- ATGTGTCAACGATGTCAAGAGCAATTCACCGATATCCAGGAGTACCTTACGCACAAAGCCGAATGTGAGAAAAAAGCCATCAAACACGACGATCCAGCTCATTCCGATCCCGAAGATATGGTAGTGTCTGAAGAAGACGACGACGATGACGACACAGGTGGAAAACGACTCGAACGCATGCGCCGCCATCGACAAGACGCCGCTAACAATAACAGCGTTGAAGAAAATTCTCCAGATGAAAACAGTCCACGGTTAGCTTTTCCGTTTCCAATTCCTTCGGCACCAGGTCATGTAACACTGGAAGCTCTTCAAAACACGAAAGTGGCTGTCGCTCAATTCGCTGCGACAGCTATGGCTAACAACGCAGACAATGAAGCTGCTCTTCAAGAACTAGCCGTGTTGCAGTCTACATTATTCACACTACAACATCAACAAGTTCTTCAGTTGCAACTTATCAATCAATTGCAACAGCAACTCCAGATTGACAGATCGAAAGCTGCAAGCCCTGTTTCGCCCCCGCCGTCCGAAAATGACGGTGAAACCGCTCCAGCAGAAGCTTCACCGCCTCCACAAAACCTTCCTCTTTCTCGCGAAGCTACACCAGCGCCTGCTGTACAACAACCGCTTAACCAAACACAGCAGATTTCAGAAACATCGGAAAATCAGACTGAATCGAGCATTCCTTGCTCTTTATCTCTGCAATCTCAACACTGTTCCATATCATCATCGTTGGCTTCGACGATAATAACACACAATAATGAGCCACCTTCTTTAGATGAACCAAATACTTTAGAGATGTTGCAGAAAAGGGCGCAAGAAGTATTAGACAACGCCAGTCAAGGCTTATTAGCTACTAATTTAGCTGACGAATTGGcgtttagaaaaaacaaaggTTCTTTATCTCCGTACGATTCTAAAGGACGCAACGAACCCTTCTTTAAACATCGTTGTAGATATTGTGGTAAAGTTTTCGGTTCTGATTCCGCTCTACAAATACATATCCGTTCTCATACCGGGGAACGACCTTATAAGTGCAATGTTTGTGGTAGTCGTTTTACCACGAAAGGTAATCTTAAAGTACATTTTCAAAGGCATAGTGCAAAGTTCCCTCATATCAAAATGAATCCAAATCCGGTTCCGGAACATCTAGATAAATATCATCCACCACTCTTGGCGCAATTGGGTCAACAACCATCATTATCGCCAGGAGGTCCTCCTCATCCGCCCCATATTAGTTTTCCTGGAGGACATCCTTTCCCGCCCACTTCTTTGCCATTGTATCGACCCCCAGGACCACCACCTCCCGATATAGTTAATAATAGATTGCAACCGTCACCACATAGACCGCAAGATCCAGCACAAAGACTTTTCCCGCCGCATCCTCTTTTCATGAAAAGAGAGGAGCAAGAGGTTCCAGAAAATTTAAGCAAACCAACCAGATCGCCAACACCAGTGAAGGATTCCAGTAAGGTAGAGGTTTCCGAAGAGAAACGTAATTATAGTGAAGACCTACAATCAAATTCCAATGTTCCTCAAATGGCTTTAAAACAAGAACCGAACGATCCGGATAATGAAGGAGAACAGGAGCCTGAACGCTTTTCATCTCCCGCTCCATATGATGAATGCAGCATCGATAGTAGCAAATATAGCAACGAAGATACATTAGGGACGCGGAGTCCTGGAGCTGATCATTCAGAAAATATGCAGGATGAGCCTGAAAATCTTTCCAATAAGAGTAATTCCATAACTGTTCCTTTGAGCATTTCGACGGGACAAAGATTGCCTGCTAATTTCTCATTTGGACAAGTAAGTTCTCCACCTAGCAGTACTTCGTCGGGAAGTTTGGGACCATTTCCTGCGACTGCTTTAGTAGATCCAGCGAAAGATCCGGCAATCTACTCAAATTTATTACCGCGTCCCGGAAGCAACGATAATTCATGGGAAAGTCTGATCGAGGTAACGAAAACTTCGGAAACTAGCAAACTTCAACAACTGGTTGACAATATCGAACATAAACTCTCCGATCCGAATCAGTGTGTGATATGTCATCGAGTGTTGTCGTGCAAAAGCGCTTTACAGATGCATTATCGAACTCACACGGGCGAACGACCTTTCAAATGTAAGATTTGCGGGCGCGCATTCACTACCAAAGGCAATCTTAAAACACATATGGGAGTTCATCGAGCAAAGCCTCCTATGCGTGTTTTACACCAGTGTCCCGTATGCCACAAAAAGTTCACGAACGCTTTAGTTTTGCAACAACATATCCGACTGCACACCGGCGAACCGACTGATCTCACCCCAGAACAAATTCAAGCTGCTGAAGTCAAAGATTTTCCATCTCCGGGAGGATTCCCATCATTACACAATTCCATTAATCCATTCCTCGGGCAAGGATTCGCTGTTCCTGGACTCTCACCATTAGGACCTGCCGGAATTCCACTCAACccaaaattcgaaaaatttgaaaaggaCGAGCACGAATCAATGGATGACGATGATGAAGACGATGACGAAATTAgcaattcagaaaatcaaaatcaacGTTTTGTTTCTTCTCCGCCAGATATGCATGGAGCACACAATAATGTTGCCTCGCAGTTATCTAGTGGTTTGAGTTGTTCCGCTGAAGATTTATGCTCGAATAGGACAGCTGCTTCTGCTTCTCCAATACAAAATGGAGAGAAATCGCCTTGCCAATCTGGAGTCACAAGTCCAGGAGGTTCAGAAATTAGATCGTCGCCAAATAGAGCTTCAATAACGCCCGTCCAGGTTCCACGTCCACCTTCTTCACAACAAGCAGGTAGTCCAACTCCTTCCGAGTGCAATTCTTTGGGTGCTTTAGATTTAACACCCAGAACTAATCAGCCTTTGATCACAAGTCCAGGACCTAGTCCTGGACCTCCCCCGtctttattttcaactttcggATTGATCCCAGGTCAAAGCTCTACCCCTTTGATGTCTTCGGCACTTTCATCTTTAACTTCGTCCGTTTTGACGTCAACAGCATTCAGTCCATTACGATTAGCTGTTGGTCCTCCAGGTCGAGGCAATACCACCTGTAACTTGTGTTTCAAAACATTCGCTTGTAACTCAGCGTTGGAAATCCACTATAGGAGTCATACGAAAGAACGCCCTTTTAAATGCAGCGTCTGTGATCGAGGATTTTCAACCAAGGACAAATGTGTATGTAGAGAGAGGCGTATCCAGGATGAAGATAATCATCGAGGGGCAAGCAAAAGGAAGCCTGCTCTTCGCAGCAGTATACCATCGGTATTTCCACTACCGATGAGCCCTGGATACGCCTCGTCTTGGATGCATGTCGCGGGTAATATGAAGCAGCACATGCTCACACACAAAATCCGAGACATGCCTCAACATATGTTCGAAAATAAGCCGTCAGTAAGTGGAGACGAATCTTCTCAAccaaatcaacaaaatttgcCACCTAGAGAAGCACAATCAAATGAAAGTGATCAGCCAAACCCACCCGCCGCGCAGTCTTCTTCAGCTAATGAACAAAACAAGGAGCAACCAGTGAAAAGAGAGCCAACCGAGACCGAACTCCCATTGCCAAAACGTCCACCTAGCTTACAGGCAAGTAAGCACTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGCTCGGCCTTGCAGATACACATGCGTACGCACACGGGCGATAAGCCGTTCCGATGCACCGTGTGTCAAAAGGCCTTCACCACCAAAGGAAATCTTAAGGTACATATGGGAACGCATATGTGGAGCAACGGAGCGTCGCGACGAGGTCGTCGCATGTCACTCGATCTTCCACCCATTCCCATGACACCCAAGGATTCCGAATTTCTGCAACGGAGGCCAGACCTTTTTTACCCGTACCTACCGGCTCCATTCCTTAACGGCATGCAGCAAAAGCTGAACGAGATGTCAGTCGTACAGAACAATCAAAACGGTTTGAGTGGAGCCGGCAAGTACAGTGGTCTTCTTGGTTTCGGCTACCCGCCACCAGAGGTGTTGCGTTCTCAAGGTGGTTCCCCGGAGCGTAATGAGAGACCTCCAAGCCGCGACCCGGAATCGCGTAGCCTGTGGGATCTACATTTCGAACGTAAATCAGCCCCGGAAACCCCCCGTGAAGAGCTGTTACCAGCTGGTAGGGAGGGTTTAGCCGCCTGA
- Protein Sequence
- MCQRCQEQFTDIQEYLTHKAECEKKAIKHDDPAHSDPEDMVVSEEDDDDDDTGGKRLERMRRHRQDAANNNSVEENSPDENSPRLAFPFPIPSAPGHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLQIDRSKAASPVSPPPSENDGETAPAEASPPPQNLPLSREATPAPAVQQPLNQTQQISETSENQTESSIPCSLSLQSQHCSISSSLASTIITHNNEPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKNKGSLSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPPHPPHISFPGGHPFPPTSLPLYRPPGPPPPDIVNNRLQPSPHRPQDPAQRLFPPHPLFMKREEQEVPENLSKPTRSPTPVKDSSKVEVSEEKRNYSEDLQSNSNVPQMALKQEPNDPDNEGEQEPERFSSPAPYDECSIDSSKYSNEDTLGTRSPGADHSENMQDEPENLSNKSNSITVPLSISTGQRLPANFSFGQVSSPPSSTSSGSLGPFPATALVDPAKDPAIYSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPSLHNSINPFLGQGFAVPGLSPLGPAGIPLNPKFEKFEKDEHESMDDDDEDDDEISNSENQNQRFVSSPPDMHGAHNNVASQLSSGLSCSAEDLCSNRTAASASPIQNGEKSPCQSGVTSPGGSEIRSSPNRASITPVQVPRPPSSQQAGSPTPSECNSLGALDLTPRTNQPLITSPGPSPGPPPSLFSTFGLIPGQSSTPLMSSALSSLTSSVLTSTAFSPLRLAVGPPGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKDKCVCRERRIQDEDNHRGASKRKPALRSSIPSVFPLPMSPGYASSWMHVAGNMKQHMLTHKIRDMPQHMFENKPSVSGDESSQPNQQNLPPREAQSNESDQPNPPAAQSSSANEQNKEQPVKREPTETELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSVVQNNQNGLSGAGKYSGLLGFGYPPPEVLRSQGGSPERNERPPSRDPESRSLWDLHFERKSAPETPREELLPAGREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330030;
- 90% Identity
- iTF_01410203;
- 80% Identity
- -