Basic Information

Insect: Latheticus oryzae
Gene Symbol: ham
Assembly: GCA_030157265.1
Location: CM058056.1:9495594-9513557[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.014 1 9.9 0.5 2 23 248 270 247 270 0.95

2 9 0.00028 0.02 15.3 2.3 1 23 277 300 277 300 0.96

3 9 2e-08 1.5e-06 28.3 3.1 1 23 306 328 306 329 0.96

4 9 1.1e-06 7.8e-05 22.9 1.7 1 23 335 357 335 357 0.95

5 9 2.7e-05 0.0019 18.5 5.0 1 23 363 385 363 385 0.99

6 9 0.00053 0.039 14.4 0.7 2 21 393 412 392 413 0.95

7 9 9.1e-09 6.6e-07 29.4 0.7 1 23 704 726 704 726 0.98

8 9 1.2e-06 8.6e-05 22.7 1.6 1 23 732 755 732 755 0.97

9 9 9.2e-06 0.00067 19.9 3.4 1 23 761 783 761 783 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.014	1	9.9	0.5	2	23	248	270	247	270	0.95
2	9	0.00028	0.02	15.3	2.3	1	23	277	300	277	300	0.96
3	9	2e-08	1.5e-06	28.3	3.1	1	23	306	328	306	329	0.96
4	9	1.1e-06	7.8e-05	22.9	1.7	1	23	335	357	335	357	0.95
5	9	2.7e-05	0.0019	18.5	5.0	1	23	363	385	363	385	0.99
6	9	0.00053	0.039	14.4	0.7	2	21	393	412	392	413	0.95
7	9	9.1e-09	6.6e-07	29.4	0.7	1	23	704	726	704	726	0.98
8	9	1.2e-06	8.6e-05	22.7	1.6	1	23	732	755	732	755	0.97
9	9	9.2e-06	0.00067	19.9	3.4	1	23	761	783	761	783	0.99

Sequence Information

Coding Sequence: ATGAAGAACAGGGAGAGGGCGCGTGAACCCGAAGGAAGCGAAGATGAATTAGAAGTTTCCGCGCAAAACCATCAAGATTCCATGGAGAAAGCTATGGTTCCTCCTCGAATTGATTCATTAAAAGTCAGCGATTATTtgtctaataataatgtcGAAGACACTACTCCTGCCAAAATTACTCTAAAATCAGCAGAAGAACTTTTTGAAGTCAACTGTAATGAGAGATTTTACAATGGTACCAAAGATGACTCTTTATACTCGAAATATAGGGAATTAACACTGACTACAGGAATAGTACCTTGCGAAATTGACATCAGAGATGGAGTTTTCGCTAAAACAATTATCCCCAAAGGTACTCGTTACGGTCCGTTTCAAGGAAAATGGGCAAGTACACCGCAAGATTCAAGATTTGCTTGGgaggtaGTAGCAGGCTCGGGCGTCCGAGGTTGGTTGGACGGTTCCAGTGAGCACCAAAATTGGCTAAAGCTGATAAGAAATTGTGATAATAAGAATGCAGCTAATATGCGGTATTATCTACAAGGAGGACAACTATGGTACGAGACTATTATGGACATCCCCGATGGGGCCGAGATGGTCCTGGGTGCCAAAGAACCTCTAAATTTACAAGACATGTTTGGAGACTCAACTTCAGCTGATGAGAAGTCAGATCGTGAAACTGcATCTCAGCATAGTGGTACCGTCGACGACCATGAAGATGACGAAGAGGACGAATCCGAAACTCGTTGTTGCGTGTGCGATCAACCCTTTACTGATGTAGATAAattGGATGAGCATCTTATTGTCAAGCACAACTATCGCAGAGACGAGTATAGATGTGATCTTTGTCCTAAAGCATACTCACATCGCCCATGTTTAATCAAACATAGGTCGGTGATACATGGAGAACATCGAAAATACCATTGTGAAAATTGCCCAAAGatttttactGATCCAAGCAATCTCCAGAGACATATAAGAACTCATCACGTGGGTGCTAGATCCCATGCTTGTCCCGAATGTGGCAAGACTTTTGCTACATCTTCAGGGCTGAAACAACACACTCATATTCATTCTAGTGTGAAGCCATTCCAGTGTGAAGTGTGCTTCAAaGCTTATACTCAATTCTCGAACTTGTGTCGTCATAAACGTATGCATGCTGATTGTCGCATGCAAATTAAATGTGTTAAGTGCGGCCAATCTTTTTCTACTGTTACGTCTTTATCCAAACATAAAAGATTTTGCGATTCGACAACACCAACACCTTCTTTAACATCACAGCAGCAATTGCCAATGGCTAGTAATAACCCGTTTTCAATGTATCGGCCAACTTGTCATTTACCGTTTTTTCCACCGCATTTTTCTCCTTATCCGCAGATTTTTCCTCCGTCGGGACCTCCGCCTCCTTTCATCAATCATTTATTGTTTAATCCTTTACCTAAATTGAAAACCGAAGAAGAAGGTTCTCCGTCGAAGAAAACTAAAGCATTGAGTCCGGAAAGATTTTCTCCAGTAAAAGAAAGATTTACACCGCCGCGTGTTCCTTCGATTTCTGCAAAAATTAGTCCTCCTACAGCTGAAGAAGCTAATTTAACTCCTTCTCCTGCCAGACCTAATCATTTAATGATGAATCATCGGGACCAAACTCAAGAGGATTGTCCAAAAGATTTGTCAAGAACTAGTGAAACTAAAACACCGCAGAGTGTTAGTAGCGAAGATGGTGACCAACCTTTAGATTTGAGTATTGGTTGGAAAAAATCACGAATGGTTCCACAAGACAAACCTATAATTAAACACGAAATTCGCGATTTACTTCCAAAACAAGAAGATAGAATTGAAGTGGTAGATGTTGAAGAAGAGAAGAAAGAAGTCACTCCTCCGATGGCTTATCCTCGACCTATACATCCCATGCTTTTGGAGATGTACAGACcgaatttttctaattttcagcAGAGTAGCGACCGATTATTACATTCTCCTTTCGGTCCTCCACGTTTCCCGTTTTTGCAACCCCATCGCATTGATATTCTTCGTCCTGGGCTTCAGAATTTCGGAGGTAAACCGTTTCACGACATGATCCAACAACAAACTCAAGGAAAAATGAAAGATAGGTATGCTTGTAAATTCTGCGGGAAGGTCTTTCCTCGTTCGGCGAACTTAACACGACACTTAAGGACTCATACGGGAGAGCAGCCTTACAAATGTCGATATTGTGAGCGTTCTTTCAGCATCTCCAGCAATTTGCAAAGACACGTTAGAAATATTCACAATAAAGAAAAACCGTTTAAATGTCCACTCTGTGAACGATGTTTTGGACAGCAGACTAATTTAGACCGACATTTGAAGAAACACGAAGCTGATGACGGAAGTGGAGGAGTGGCAGTTGCTGACTCACCTGGAAGCAGCAATGAAAACGAAAGAGAAGACGCGTGTTTCGACGAGATTCGGTCTTTTATGGGCAAAGTAACGTATTCTGGAGCTGAATTCAATCAAACAAGGATTTTCACACCTCCTTCACACAACGTGATCGACGTAGTGGGAAAAGATGATGACGATTCTGAAGCTTCAATTGACGATTTTAATAAAGTGGAAGAAGAAGTGTTGAATAACAACGATCagactataaaaatttcaacttag
Protein Sequence: MKNRERAREPEGSEDELEVSAQNHQDSMEKAMVPPRIDSLKVSDYLSNNNVEDTTPAKITLKSAEELFEVNCNERFYNGTKDDSLYSKYRELTLTTGIVPCEIDIRDGVFAKTIIPKGTRYGPFQGKWASTPQDSRFAWEVVAGSGVRGWLDGSSEHQNWLKLIRNCDNKNAANMRYYLQGGQLWYETIMDIPDGAEMVLGAKEPLNLQDMFGDSTSADEKSDRETASQHSGTVDDHEDDEEDESETRCCVCDQPFTDVDKLDEHLIVKHNYRRDEYRCDLCPKAYSHRPCLIKHRSVIHGEHRKYHCENCPKIFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTPSLTSQQQLPMASNNPFSMYRPTCHLPFFPPHFSPYPQIFPPSGPPPPFINHLLFNPLPKLKTEEEGSPSKKTKALSPERFSPVKERFTPPRVPSISAKISPPTAEEANLTPSPARPNHLMMNHRDQTQEDCPKDLSRTSETKTPQSVSSEDGDQPLDLSIGWKKSRMVPQDKPIIKHEIRDLLPKQEDRIEVVDVEEEKKEVTPPMAYPRPIHPMLLEMYRPNFSNFQQSSDRLLHSPFGPPRFPFLQPHRIDILRPGLQNFGGKPFHDMIQQQTQGKMKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGSGGVAVADSPGSSNENEREDACFDEIRSFMGKVTYSGAEFNQTRIFTPPSHNVIDVVGKDDDDSEASIDDFNKVEEEVLNNNDQTIKIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568276;
90% Identity: -
80% Identity: -