Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058055.1:7208583-7210775[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.15 11 6.7 2.9 2 23 160 182 159 182 0.92

2 10 0.0007 0.052 14.0 0.4 1 23 188 211 188 211 0.98

3 10 3e-07 2.2e-05 24.6 0.7 1 23 217 239 217 239 0.96

4 10 5.9e-08 4.3e-06 26.8 2.1 1 23 245 267 245 267 0.99

5 10 8.1e-07 5.9e-05 23.2 0.2 1 23 273 295 273 295 0.97

6 10 0.0003 0.022 15.1 4.6 1 23 301 323 301 323 0.98

7 10 1.4e-05 0.001 19.3 1.7 1 23 431 453 431 453 0.98

8 10 8.9e-05 0.0065 16.8 2.6 1 23 459 481 459 481 0.95

9 10 4.1e-07 3e-05 24.1 2.0 1 23 487 509 487 509 0.99

10 10 1.1e-05 0.00081 19.7 1.2 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.15	11	6.7	2.9	2	23	160	182	159	182	0.92
2	10	0.0007	0.052	14.0	0.4	1	23	188	211	188	211	0.98
3	10	3e-07	2.2e-05	24.6	0.7	1	23	217	239	217	239	0.96
4	10	5.9e-08	4.3e-06	26.8	2.1	1	23	245	267	245	267	0.99
5	10	8.1e-07	5.9e-05	23.2	0.2	1	23	273	295	273	295	0.97
6	10	0.0003	0.022	15.1	4.6	1	23	301	323	301	323	0.98
7	10	1.4e-05	0.001	19.3	1.7	1	23	431	453	431	453	0.98
8	10	8.9e-05	0.0065	16.8	2.6	1	23	459	481	459	481	0.95
9	10	4.1e-07	3e-05	24.1	2.0	1	23	487	509	487	509	0.99
10	10	1.1e-05	0.00081	19.7	1.2	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: ATGGAGGTGTACGAAACTTGGAGAAGTTACGCAACGATTTGTAGATTGTGTTTACAAAAAGATGGGTATATGTTGGGCATTTTCAACCATATCCAAGGAAAAGATAAAAGTATTTACAAGAAAATCATCGATTGCACCGCTTTACAAatatcTCAAAGTGATGGGCTTCCGAATGTCATTTGCCATCGCTGTTTATACAAGATCGAATTTTGCCTCGATTTTCGTAAATTATGTTTCATGTCCGATGCAACTCTTCGTCAGTTGAATGCAGCAATAGTGACTGAGAATAATGGTTCGACGGAATCTTGTCCACCATCTCAGCTCTTCGAGCAATTCGTTAATGGTAATGAAGAAGATGTAGTAATGGTAGTGGATCCGaatgctttagattatgaatCGGATTACGAGAGTGAAAGTCGTCCAAGCGATGCTGAAAACACGGAAACTATTGATACGTATGGAGGAAAGAATGTTTCGATGTGTAGATATTGCGATCATGCGTTTACTGATAAAACGGAATGTTTGGATCATGAGAATACAGCACATAATAATGATGTTCCATATACTTGCAGTCTTTGTAGTTTGAGTTTTGCTGATAGGTTGCAGTATTCAGCACATTTGAAGAGTGTGCATCAAAATGATAAGCCTTATAATTGTCCGCAATGCGATCGGACTTTTGCTAGAAGATCCGATCTTCGGAAACATACAGTAGTACATACAGGAATCAAACCATATACTTGTATGGTCTGTTCTAAATCATTCTCAAGAAATACCAATTTATCTAAACATATGAGGATACATTCCGGACAGAAACCTTTTGTTTGTCCCAAATGTCCAAAGACATTCTTCTCTAAAGGAGACTTAACTCGACATGCTATTATCCATTCGGGACAAAAACCATTCAGTTGTAATTTCTGTCATTTAAGTTTTGGCAGAAAAGATAAATTATTAAGACACGAAAAACGACATTTCCCGCAAGAAAATTCCGAAGATAAATCACAAGAATTGCAAATGATGAGAGATAATCTCGGTGactattataaaaatgataacaTTGAAGAAACAAGAGAGAGTGAAGAGAAGCAAGAATGGCCAGATTCAGAAAATATGGTTATTAGTTTAGATCCATtcaatcataataattttgataattcgaTAAAATCCGAAAATCAGTCAGAAACAGATTTGACTAATGAAGGTACGAAAGTTGAAGGAAATGAAGTTCGCGATTTACCACAAATTCCTGCACATATCACTGGTGATAGTTTTTCGAATGATGATGCAAAAAGATATTCGTGTGATTCTTGTCCGAAGACTTTTTCGAATCCGGAAAATATGAGGTATCATCATGCGACGCATTCAGGGATAAGGCCACATGCATGTTCAGTTTGTAAGAAAACGTTTATTAGAAAAAGAGAATTAGATAGACATTTTGCGACACATACAGGGATGAAACCATTTAAGTGTGTTAAATGTAGTAAAAGTTTTGGAAGAAAGGATAAATTAGTGCGGCATATGAGGATTCATGATGTTAAAAAGGAACATTCGTGTACTATGTGTCCAGCAACGTTTAATAGAAGAGATGGGTTGTTGCAGCATATAAAAACACAtgtaaaaaatgaacaaagtGCTTGA
Protein Sequence: MEVYETWRSYATICRLCLQKDGYMLGIFNHIQGKDKSIYKKIIDCTALQISQSDGLPNVICHRCLYKIEFCLDFRKLCFMSDATLRQLNAAIVTENNGSTESCPPSQLFEQFVNGNEEDVVMVVDPNALDYESDYESESRPSDAENTETIDTYGGKNVSMCRYCDHAFTDKTECLDHENTAHNNDVPYTCSLCSLSFADRLQYSAHLKSVHQNDKPYNCPQCDRTFARRSDLRKHTVVHTGIKPYTCMVCSKSFSRNTNLSKHMRIHSGQKPFVCPKCPKTFFSKGDLTRHAIIHSGQKPFSCNFCHLSFGRKDKLLRHEKRHFPQENSEDKSQELQMMRDNLGDYYKNDNIEETRESEEKQEWPDSENMVISLDPFNHNNFDNSIKSENQSETDLTNEGTKVEGNEVRDLPQIPAHITGDSFSNDDAKRYSCDSCPKTFSNPENMRYHHATHSGIRPHACSVCKKTFIRKRELDRHFATHTGMKPFKCVKCSKSFGRKDKLVRHMRIHDVKKEHSCTMCPATFNRRDGLLQHIKTHVKNEQSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568270;
90% Identity: -
80% Identity: -