Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058050.1:9328537-9331647[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-05 0.0018 18.6 0.7 1 23 165 187 165 187 0.95

2 15 0.0011 0.079 13.4 1.2 3 23 195 215 194 215 0.99

3 15 9.2e-05 0.0067 16.8 0.1 1 23 321 343 321 343 0.98

4 15 0.025 1.9 9.1 0.2 1 23 349 372 349 372 0.95

5 15 8.2e-07 6e-05 23.2 3.9 1 23 396 418 396 418 0.98

6 15 0.0023 0.17 12.4 0.0 1 23 431 453 431 453 0.95

7 15 0.4 29 5.3 0.3 1 23 459 482 459 482 0.88

8 15 0.051 3.7 8.1 1.9 2 19 490 507 490 508 0.96

9 15 0.0002 0.015 15.7 3.6 1 23 517 539 517 539 0.97

10 15 0.003 0.22 12.0 0.3 2 23 545 566 544 566 0.96

11 15 7.7e-06 0.00056 20.1 0.4 1 23 574 596 574 596 0.98

12 15 0.0033 0.24 11.8 0.2 3 23 604 624 602 624 0.97

13 15 0.00011 0.0078 16.6 0.3 1 23 630 652 630 653 0.95

14 15 0.031 2.3 8.8 1.5 1 23 667 689 667 689 0.96

15 15 0.018 1.3 9.5 0.1 1 20 1013 1032 1013 1035 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-05	0.0018	18.6	0.7	1	23	165	187	165	187	0.95
2	15	0.0011	0.079	13.4	1.2	3	23	195	215	194	215	0.99
3	15	9.2e-05	0.0067	16.8	0.1	1	23	321	343	321	343	0.98
4	15	0.025	1.9	9.1	0.2	1	23	349	372	349	372	0.95
5	15	8.2e-07	6e-05	23.2	3.9	1	23	396	418	396	418	0.98
6	15	0.0023	0.17	12.4	0.0	1	23	431	453	431	453	0.95
7	15	0.4	29	5.3	0.3	1	23	459	482	459	482	0.88
8	15	0.051	3.7	8.1	1.9	2	19	490	507	490	508	0.96
9	15	0.0002	0.015	15.7	3.6	1	23	517	539	517	539	0.97
10	15	0.003	0.22	12.0	0.3	2	23	545	566	544	566	0.96
11	15	7.7e-06	0.00056	20.1	0.4	1	23	574	596	574	596	0.98
12	15	0.0033	0.24	11.8	0.2	3	23	604	624	602	624	0.97
13	15	0.00011	0.0078	16.6	0.3	1	23	630	652	630	653	0.95
14	15	0.031	2.3	8.8	1.5	1	23	667	689	667	689	0.96
15	15	0.018	1.3	9.5	0.1	1	20	1013	1032	1013	1035	0.93

Sequence Information

Coding Sequence: ATGGAAGATAATTTTGCTCTATCCTGGGAAGACTCCGCCGTTGTACAAGGGGAAGAAGTCATTTGTAGcattgaaaatgaaattctTCCCACCGAAAGTGAAGAATTCACCGGTGGCGTTCAAGAAGCCGTTGTCACTGAAGAAGGAGCAGAAGAAGAGTTAGAAGAACAAGCTCTAGCAGAAGCTATTATTCCAGAACAAGAAGGTAACATTGTTTACATAACTGAGGACAATGTTCTCGTTATGCAACCGACGCATGCCGTCAGCTTCCAAGAACAGTTTATGGAAGTTGGAGGAGAAGTTACAGAAGAAGTATCGGAAGATGTATGCGAAGAAGTAACAGAAGAAGTAGTAACGGAACAATGGGACGAAAGTTGTCCGGAAGAAATTATCGTTGGTTCCGAAGAAGCAGTTGGTAATGAAGAACAAGCTAACGAAGATTTGGATATACCGTTGCCAACTGATCAAGATGAATATACTGCTTCTAGACCGTATCCGTGTGATTTTTGTAGCAGAAGATTCAGAAAGAAAGCGAATTTGATGAATCACATGGTAGCACATCAAACTGATAGACCGCACGGATGTAATTTGTGTGGTGTCAGGTATATAAGAAAATGTGATTTAATGaatcatttgaaaatacaTGCATACATACCGGATACTGATGGTTTAGAGGAAGATGATACGCAACAGCTTGATGATTCAGATGGAgagaaaagaataaaaaggAAACAGTTTCCAAGAAGAAAAAAGAGCAAAATCAAGGAAGAATATGATTCATATGAAGGTGATGATACTGTGGCTTCAAGCTCAAGAACTTACAATTATGTCGATGAAGATATGCGATTGATGGAAGCTATggaaaataatggaaaaaacGAGTATGCCGATTATGGCGATTATATTTCTGAAAATCAACCCGTAGAGGTCAGATATCCAATAACTGATCCAAGAAAGCCTTTTGTATGTCAACATTGTGGTGTGGGTTTTGCACGTGAAAAAGCTCTAGCTTCACATGCTAGAATTCACGGAGGCGATAGTCCATTTGAATGTCAGAAATGTGGCGAAATGTTTTGGGATGTTGCTTTAATGAGAGAACATTTGCGCAATAAACATGGAGATATTGAAGAGTTTGATGATGATGAAGATGAAGATTATTCGGAAGAAGATTCGAAGTATGGAACCTTTTATTGTTCAACTTGTGGTTTGTCTTTTCATCGTCAAGATAACTTGAAAAGGCATCAGAGAATACACATCAAAGAAGAGTTTATCAATGATCATGAGTTTGGTCATGTTTGTAACGTATGCGGCGAATCATTCCCTGAAGCGCTTGATTTGTTAGCGCATGCTGAAATTCATGCTAGAGGATCTGAACATCGTTGTATGATATGTGGAGAGGTATGCAATGACGATCAAGCTGTGGCCGTTCATGTACAAGCCAAACACGGCAAAAACCTTCCACCAAATACTTGTATGCTTTGCGGCCGTACTTGCAAAGATCGACGCACTTTATTAAAGCATTCTTGGGAGCactcaaaagaaaaaagttttgcttgttCTAAATGCGCCAAGACGTTTCATAATAAAGCCAGATTGAAGCGTCATATGTTATCTCATCGGAATAAAGTCGTTTCTTGTGACGTGTGTGGTGAAGAATTCCCTGATGGGAGGTCGTTAATGAATCATAGACATAGTCATAGTAGTCTTTCTGGAAGACAGTTCCCGTGTAGAGAGTGTGGAAAAACATTTGGATCACGTAGTTCACAACAGATTCATATTAGAATTCATACAGGTGAAAGACCGTATGGATGTAGATTTTGTTGGAAGGCATTTGCCGATGGAGGAACTTTACGAAAACATGAGAGAATTCATACAGGAGAAAAGCCATATGCATGTGCTGTATGTCCTCGGGCATTTAATCAAAGAGTAGTTTTACGTGAGCATATAAGATCACATCATTCAGGTCCAGATCCGAAATACACTCATAGTGTCACTCCGTACTGTTGCTCAGTGTGCTCAGATATGTTTGCTACATCACAAGATCTAATCGTTCACTTGATTCATCATTGTGATCTTAATACAGCAATGAAAAGACAACCACAAGTCGGTCcgagaaaatataaaagaaggAGGAAATTGAAACCACATGAGTTGGAAATGATTTCAAATAAACCGGAAGAAGAagttgaagaagaagaagagcAACCTACTTACAGCGATTCCGATGATGATAGAGATATGAGGAAGAAGAATAAACAGAAACCTAAGAAAGCATCTCCCAAACAAAGTTTGAATGAGACTTACACAGATCTGTATAATAGTTGTTCATCTGcgattgaaaatattaattcaattGTCAATTCAAAATCATTGTCAAAGTCTAAAAGAAAAGTGAAGACAGAACCAACAGTGCCATCTAGGCCGAAGATGATACACACGCAAAAGACACGAGTGCCTGTAGAAACAGGTGAAGATGGTAAAGTGAGACATAAAACGAAAACGTTGGTTACTAGAACACAGCCTACTGAATTAAGATCGGCAACAGGCGAAAGAATAAGACCCAGAACGAAGAATGTTAGTTATCATATCCTTAATTCAGAGAAATTGCCTTTAGCTACGTTTCCTGAAGACGATACTGAACAAGCTGTAAATAGTTTGTTGAAAGATCCATTGAATGATCAAAGTAACGGAGTGGTGTATATGGAACAAGAGGAAGCTCCAACAGAGGTCGCTTCTGAACAAATCGTTGAAACAGAAGATGGTGGGCCAGTTCCCACGAATATTATCAAAGTGACGTCGACACCTACACAGTTGCATAATTTAAGGCCTGGACGTACCATTATTGGACCAGGGAGTAAAGTTGTAAGGTTGGTTAAAGGAGGTAtgattgtaacaaaaaataaaaaattggaacCAGAGAATATTTTACCGGATTTAGAAACTAAGGAAGAGGTTAACAAAGTGAAGCAAGAAGTTGTTGATCCTAGTCCTCTACATGAACTGGCTGAATTGTCAATGCAACATGCACAAAACATGTTCAAGTGCGAGATGTGTAGTGCTGTTTTCGATGATAGAGCTAAACTGTTGGATCATGTGCCCATACATATTTGA
Protein Sequence: MEDNFALSWEDSAVVQGEEVICSIENEILPTESEEFTGGVQEAVVTEEGAEEELEEQALAEAIIPEQEGNIVYITEDNVLVMQPTHAVSFQEQFMEVGGEVTEEVSEDVCEEVTEEVVTEQWDESCPEEIIVGSEEAVGNEEQANEDLDIPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPDTDGLEEDDTQQLDDSDGEKRIKRKQFPRRKKSKIKEEYDSYEGDDTVASSSRTYNYVDEDMRLMEAMENNGKNEYADYGDYISENQPVEVRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDVALMREHLRNKHGDIEEFDDDEDEDYSEEDSKYGTFYCSTCGLSFHRQDNLKRHQRIHIKEEFINDHEFGHVCNVCGESFPEALDLLAHAEIHARGSEHRCMICGEVCNDDQAVAVHVQAKHGKNLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSLSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYTHSVTPYCCSVCSDMFATSQDLIVHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELEMISNKPEEEVEEEEEQPTYSDSDDDRDMRKKNKQKPKKASPKQSLNETYTDLYNSCSSAIENINSIVNSKSLSKSKRKVKTEPTVPSRPKMIHTQKTRVPVETGEDGKVRHKTKTLVTRTQPTELRSATGERIRPRTKNVSYHILNSEKLPLATFPEDDTEQAVNSLLKDPLNDQSNGVVYMEQEEAPTEVASEQIVETEDGGPVPTNIIKVTSTPTQLHNLRPGRTIIGPGSKVVRLVKGGMIVTKNKKLEPENILPDLETKEEVNKVKQEVVDPSPLHELAELSMQHAQNMFKCEMCSAVFDDRAKLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01410188;
90% Identity: -
80% Identity: -