Lory000448.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:4764692-4767103[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.034 2.5 8.7 0.1 1 23 323 346 323 346 0.95 2 11 2.2e-07 1.6e-05 25.0 2.1 2 23 410 431 409 431 0.97 3 11 5.2e-05 0.0038 17.5 0.2 1 23 437 459 437 459 0.97 4 11 0.00011 0.0083 16.5 1.4 1 23 465 487 465 487 0.98 5 11 3e-05 0.0022 18.3 3.4 1 23 493 515 493 515 0.98 6 11 6.7e-05 0.0049 17.2 0.9 1 23 521 543 521 543 0.98 7 11 1.4e-07 1e-05 25.6 1.7 1 23 551 573 551 573 0.98 8 11 0.00037 0.027 14.8 0.2 1 23 579 601 579 601 0.97 9 11 1.2e-05 0.00088 19.5 1.3 1 23 607 629 607 629 0.98 10 11 0.0011 0.081 13.4 0.5 1 23 635 657 635 657 0.97 11 11 2.9e-05 0.0021 18.3 0.7 1 23 663 685 663 685 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCAATGGACCCTTCTCGATATAATGAGCTTTGTAGACTTTGTGCCGACACAACTACAGTGATTTTAGCTGTCCACATCTTCCATAACGATGGAATTATCAATCAACTGCGAAAAAAGATCGAATCTTGTCTTTcgataaaaGTGCACGAATCTGATGAACTTCCGAAACTAGTTTGTGAGAATTGTTTATACAAATTAAATCTGTTGTCTGAATTCAAAGAAAAGACTATTCTTGctgagaaaattttaatagatttGTTGAAAAACGTGAATTCGAATAAGATGGTGCAGCACAGTCAACAACAAATGGATGCTGTTGATCTTATAATGGCTCAAAGTCAACAACTTTTAGTTAATCATGGTATTGATAGTGTTGATGAAATTGATTTGGGACATTTAGGCACACGCGAGCAATTAATTGTTGATCATGAAATTATTCTTTCGCATCAAAATGTGGATATCAATGGACATTCGTTAGATAATATCAATTTAAATCATCATGATATTTCCAATCACAGTTTACAAACTCAAGACTCGATTTTAGTGGAAAGTGGCAGTGGTATTGATAGTGCGCGGTTTGCTAATgataatttagatttaatcCCTCACCAACAGTTACTGAATGAACAGTTTAGGTTGCAGCATGATTTGCATGTCAACATGGGAGATGAAAATACGGTTGATGAAATGGGGCTTAGTGGAGGATTGGACAGTTCTGTGGTAGCAAAgGTGGAGGAGAATATGCAAAATTATCACTTACACGAtgcaaaacaaaatattgattaCAGGACTAACGACCAAAAATTAGATTCCCCTAAACTTGAAGATAGTAATAGTAACAATTCACTTTTAATTGATGAAAGGCTGAATAACGATAATTTAACAAGTCAAGTATAtgttattgaaaataacaaaaatgatgatttttataacgAAAATGAGCATTATGGGCCACAACTTTACAAATGTGAGGTGTGTTTTGCTGTCTTTCCAAACAACAGAATATTAGCAGAACATTTGAAAGAATCCCATAGAAATACAGAAGTTAAAACAAGGTTGAAACGAGCCACTCTacctataaaaaataaagcagAAAACGATAGCAACAGTGAAGACAGCGGAGGTGATTTTGCAGATGACCATGAAcagactgaagaagaaaccgAAGATAATAtacaattaacaaaaactcCAAATAAGAAGAAAAACTGCTCACCGAAAGTGTGTAAAGAGTGTGGAAAATCGTATAAaactaattataaattaaatgaacaTATGAGAAAACACACAGGGGAAAAACCGTATAAATGCAGTGAATGTGAGAAGGAATTTCGATCAAAAATTGGGTTGGCTCAGCACGCGGCGAAACATACAGGCAAATATGATTATGCTTGTCAAATTTGTGGCAAGGGTTTTCAGTGCAAAAGTTATTTAATGGTTCATCAAAGAGTTCATTCAGATGAGAAGCCGTATCCATGTTCAACGTGTGGACGGCATTTTAAAACAAAGCAATCGTTATTAGACCACACAAATAGGCATTTAGGAGTGAAGCCGTATACTTGCGAAATTTGTGGACGGGGGTTCATCACAAAAGGTTTGTGCAAAGCGCACCAGAAAGTCCACACAGGTTTAGATAATCGGAAGTATTCATGCAAAGTCTGcaataaaatgtttgtttcTAAAAGTTATCTACAAACTCATTTGCGCATTCACACTGGAGAAAAGCCATTTATTTGTGAAgTTTGTGGGAAAGGTTTCCTGACTAAAGTAGATTTAAGGATTCACACAACAATGCATACAGGTGAAAAATCGTACGTTTGTGAAATGTGTGGTAAAGCTTTTGCTAGAAGAGACGCTTTAAGGTGTCACAGAAGGTCACATACTGGTGAAAGACCTTACagTTGCGATCTTTGCGGACAAACATTCACACAATTCACTCCAATGGCAATCCATAAACGACTCCATACTGGGGAGCGACCTTACGCTTGTGAAAGTTGCGGAAAAACTTTTGTATCCAGATCGACTATGATGTCTCATGCCAAAAAACACAGATAG
- Protein Sequence
- MAAMDPSRYNELCRLCADTTTVILAVHIFHNDGIINQLRKKIESCLSIKVHESDELPKLVCENCLYKLNLLSEFKEKTILAEKILIDLLKNVNSNKMVQHSQQQMDAVDLIMAQSQQLLVNHGIDSVDEIDLGHLGTREQLIVDHEIILSHQNVDINGHSLDNINLNHHDISNHSLQTQDSILVESGSGIDSARFANDNLDLIPHQQLLNEQFRLQHDLHVNMGDENTVDEMGLSGGLDSSVVAKVEENMQNYHLHDAKQNIDYRTNDQKLDSPKLEDSNSNNSLLIDERLNNDNLTSQVYVIENNKNDDFYNENEHYGPQLYKCEVCFAVFPNNRILAEHLKESHRNTEVKTRLKRATLPIKNKAENDSNSEDSGGDFADDHEQTEEETEDNIQLTKTPNKKKNCSPKVCKECGKSYKTNYKLNEHMRKHTGEKPYKCSECEKEFRSKIGLAQHAAKHTGKYDYACQICGKGFQCKSYLMVHQRVHSDEKPYPCSTCGRHFKTKQSLLDHTNRHLGVKPYTCEICGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFICEVCGKGFLTKVDLRIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACESCGKTFVSRSTMMSHAKKHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -