Lory005688.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058051.1:1363264-1365483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.4e-06 0.00018 21.7 0.5 2 23 144 165 143 165 0.97 2 14 0.00017 0.013 15.9 4.1 1 23 170 192 170 192 0.97 3 14 0.00019 0.014 15.8 5.2 1 23 198 220 198 220 0.97 4 14 0.00018 0.013 15.8 0.3 1 20 226 245 226 247 0.94 5 14 1.3e-05 0.00098 19.4 0.8 1 23 254 276 254 276 0.96 6 14 0.00078 0.057 13.8 0.3 1 23 458 480 458 480 0.97 7 14 0.00059 0.044 14.2 6.5 1 23 486 508 486 508 0.97 8 14 2.7e-06 0.0002 21.6 2.2 1 23 514 536 514 536 0.96 9 14 0.00035 0.025 14.9 5.2 1 23 542 565 542 565 0.96 10 14 0.032 2.4 8.7 0.7 1 23 577 599 577 599 0.94 11 14 0.0025 0.19 12.2 7.6 1 23 605 627 605 627 0.98 12 14 1.2e-06 8.9e-05 22.7 0.5 1 23 634 656 634 656 0.96 13 14 1.6e-06 0.00011 22.3 1.2 1 23 662 684 662 684 0.98 14 14 1.1 82 3.9 0.4 3 12 692 701 690 703 0.84
Sequence Information
- Coding Sequence
- ATGGCCAAAGTACAGTACGACTTTAATCGTATTTGTCGTACTTGTAAAACGGAGTCTCCGGACATGAAATCGGTGTTTGAATCATTAGAAATCATGTACGAGTATTCCCGTATTGACGAGATGCTAATGGCTTGTAGCTCCGTCCAGGTGAAAGCCGAAGATAAATTACCTAAGACGATTTGTCTCACTTGTACCGAACAATTGAAAGCTGCTTATATTTTCAAACAGCAGTGTCAAGAAGCGGACGCTTGTCTTAGAGAATATGCCAATAATTTGCCGCAGGACGTCCAAGACGTCAAGGAGGATACTCAAAGTACAGAAGAAACGGAAGAAGCAGTTGAAGagtCGTCACAAGATCCGAAGAAAGAGAACACGACATCTCAAGGCTCTGATTTTATCGAATTTATTGGCAACAATCAAATGGTTTTAACTTGTCGAGAATGTGGCAAAGTTTTTACAACTCTTGAAGGTCTAAGAAGTCATAAGCGGATTCATCTCGGTACTCTTTTTAAATGTCGTTATTGTGGAAAAGGTTACACCAGACAAACACACGTCTATCGTCATGAACTATCCCACGGAAAACACAAACTCCACGTTTGTAGAATATGCAACAAGACTTTAACAAGAATGGAACATTTAAAGCGCCATCTAACGACACATCTCAAAGAAAAACCGTTTTCTTGCAAATCGTGCAATAGAGGATTTAATCGTGCCGATCATTTAGAAGCACATGTTGTTAGATGTAAAGGCGAAAGAGTACATATTTGTGATATTTGTAATAGAGGATTTACTAGAGAGGACAGTTTAGAAGTGCATAAAAGATTGCATGAAAATCAGAAACCTGCATTACCGACTCTGGataatattgataatattGAGGAACATTATTACGAAATTGATTATGATCCGAATTTAGATTATGGTGCGACATCTgatgttgatgattttttagaGCCACAAGTAGAAGTTACGGAAAATGAagataatgaaaaaaacaatgaaaatgaAGATACACATAAAGAAGTAGAAACGGAACCAGAAGATATCAAAGATATTCTAGAATCTCAAGTACATATAGAAATCAATGAAAATGACATTATGATTGATGAAGAAAGGAAAACAATCAGTAGAAATTACCAGAATGAAGATAGCAACGATCAAATTGATCAAGATATGCCAGCAGTAGACAATGATTCTGATAGTGTTCATTCTGAGTATCTTCCATCTAAAAGTCCAACAAAAAAACGAGGTCGGGGCAGACCCAGAAAACATTCATCAGGTTACAAATCATCAGGAAGACCACGCGGCCGTCCTAGTTTAAAAAAGAAACGTGAAGTTGAAAATCCAACTGAGGAAGAAGAAGAAGGCGAATTTGCTTGTTCAATCTGTAAtgaaattttcccaaaaatgAGCCTGCTGGACAAACATACAACAACTCACGAAAATGCCAAAGTCcatgtttgtaatttttgtcatAAAGAATTCGCAAAATACAATTACTTGAAGCGTCACATGACGTCGCATTCAGTCGTAAGACCGTTCGCATGCGAAGTTTGCGAAAAAAGATTCACGCGGAGAGATCATCTCCAACAGCATGTAAAATTGCACGATAAAAAACAAGATCATCAATGTgatatttgtttgaaaatgttCCATAGAGCTGATCATTTGATGAAGCATCAGGCTTCCAAGCACAACGTTGGAGAGAAAGTGACAGGAGAAAAGAAGTATGAATGTTCGGTTTGtttgaagaattttacaaCAGAGAAATATCGCGATGTTCATGTTAAAGGGCATATGGGTGAAAAACGGTTTCAATGTAAAACTTGCGCGAAATGTTTCTTGTCGAAGTCGCATTTGACGGAACATATGAAGTTTCATAATGAACAGTCAAAGAAGTTTTTGTGTTCGGAATGTGGTCAGAGATTTATTAGAAATGATTATTTAGTGATACATATGAGGAGGCATAGAGGGGAGAAGCCttttaaatgcaaatattGTGGAAAGGGGTTCCCAAGAACGACGGATTTGACTGTGCATGAGAGGTATCATACTGGAGAGAAGACGCATTTGTGTACTATCTGTGGGAGAGGATTCGGAAGgtatttctaa
- Protein Sequence
- MAKVQYDFNRICRTCKTESPDMKSVFESLEIMYEYSRIDEMLMACSSVQVKAEDKLPKTICLTCTEQLKAAYIFKQQCQEADACLREYANNLPQDVQDVKEDTQSTEETEEAVEESSQDPKKENTTSQGSDFIEFIGNNQMVLTCRECGKVFTTLEGLRSHKRIHLGTLFKCRYCGKGYTRQTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPFSCKSCNRGFNRADHLEAHVVRCKGERVHICDICNRGFTREDSLEVHKRLHENQKPALPTLDNIDNIEEHYYEIDYDPNLDYGATSDVDDFLEPQVEVTENEDNEKNNENEDTHKEVETEPEDIKDILESQVHIEINENDIMIDEERKTISRNYQNEDSNDQIDQDMPAVDNDSDSVHSEYLPSKSPTKKRGRGRPRKHSSGYKSSGRPRGRPSLKKKREVENPTEEEEEGEFACSICNEIFPKMSLLDKHTTTHENAKVHVCNFCHKEFAKYNYLKRHMTSHSVVRPFACEVCEKRFTRRDHLQQHVKLHDKKQDHQCDICLKMFHRADHLMKHQASKHNVGEKVTGEKKYECSVCLKNFTTEKYRDVHVKGHMGEKRFQCKTCAKCFLSKSHLTEHMKFHNEQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -