Lory005122.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058050.1:13253193-13259818[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8e-05 0.0058 17.0 3.8 2 23 171 193 171 193 0.98 2 21 1 74 4.1 2.5 1 21 312 332 312 333 0.92 3 21 1.4 99 3.6 5.6 1 23 362 385 362 385 0.92 4 21 0.12 8.6 7.0 0.1 5 19 395 409 392 412 0.91 5 21 0.031 2.2 8.8 0.1 1 23 418 441 418 441 0.90 6 21 4.8e-06 0.00035 20.8 0.6 3 23 521 541 519 541 0.97 7 21 0.04 2.9 8.5 0.8 1 23 556 577 556 577 0.92 8 21 6.4e-05 0.0047 17.2 0.7 2 23 581 602 580 602 0.97 9 21 2.2e-06 0.00016 21.8 0.9 2 23 633 654 632 654 0.97 10 21 0.046 3.4 8.3 1.2 1 23 674 697 674 697 0.96 11 21 0.0066 0.48 10.9 1.5 2 23 711 732 710 732 0.97 12 21 2e-06 0.00014 22.0 6.5 1 23 767 789 767 789 0.98 13 21 0.0098 0.72 10.4 1.6 3 23 806 827 806 827 0.92 14 21 0.00012 0.0089 16.4 1.3 1 23 854 876 854 876 0.98 15 21 2.5e-05 0.0018 18.5 0.3 2 23 892 914 891 914 0.95 16 21 0.0022 0.16 12.4 0.0 3 23 932 952 930 952 0.94 17 21 0.048 3.5 8.2 0.0 1 23 980 1003 980 1003 0.95 18 21 0.067 4.9 7.7 1.3 2 23 1014 1035 1014 1035 0.93 19 21 0.0011 0.082 13.3 0.2 3 23 1049 1070 1047 1070 0.96 20 21 0.00027 0.02 15.3 3.2 1 23 1076 1098 1076 1098 0.98 21 21 0.00073 0.054 13.9 0.2 1 23 1130 1153 1130 1153 0.94
Sequence Information
- Coding Sequence
- ATGACGGAACCGCGATTAACTAATTTCACTACGTGCTGTAGATTGTGCTTGTCTGACTCTTTGGACAATCTAAAGTCGATTTTTGATGAAAGTGTAGACGATCGAGGGTTACAACAGAAGATTTCAGCTTGTTTAGGAGTTGAGATTCTAGCGGATGATAAATTATCAACGATGGTCTGTCCTCAATGTATTGAAAAAGTAAACAACTGGCAAACCTACAAACTATCTTGTTGCGAAAATCAAACTAAATTAGAGCAATGGATGCACATGAACAGCTCTGATTTAACAGACGGGacaattcaaataaaagaagaaCCAATCGATCATGATTCATTAACACCAGAAGTTGTAATAAATGGAGAAGTTCCAGTCAAAAACGAACCGATGGAAGAAGAGTATAGTGAACTTCCACCGCCTTTAACACCGCAAGGTACTGAAGACGATGGAGATGTTGAAGTGATTTCTCACTCTCCATCTTCACAAGTTACTGATGATGAAAATAATCCAAGAAAATGTAATCTTTGTGGGAAGTACTTCTGTTCGGCAGGTAATCGCAAAAAGCACCAGCGGACTATCCATGGAATTAAGAGTCAAGATTCTACAACCGAATCCGAAGTTGGTTCTTTGAGTCAAGACGAAAGGTCGCAAAATTCTATCGATTTACAAAACCGAACTGAAACTCCAAAACTGAAAGAACCGACGActgaagaaaagaaaattttgtttgctgctgggttaaaattattacaacGGAATTCTACACCTCCAATttcgtttgaaaatttatcgaaagttgaaaatagttatattgaaaaatgcaaAGCAATGGTAACCATGCACGAGACTCTTCGATGTGCATGTCATAATGTTACTCATCCGAATTTGAAAGGATTATTGTCGCATTTGCGAGCTTTAAGGATTTGGTTTCCAGTTTTCACATGTTATCACTGTATGATAACATTTACTGATAGATCGACTAGTACTAGACATTATTTACGTTGTCCAAGATCAAATTTAGAGACTTTGattaaattatcaaacttGAAGAAACGCAGCGAAGTGAAAACTCGTCtttaccaaaattataaatgcactCAATGCAGGTTTATGTATTCTTTTCATGAAGATTTCTGTACGCATGTCGATGAAGATCATAGTCAAATTCAAATTCCGTATAGATGCACCTGTGGTCGAGTTTTCACAACTTTGGAAGACTACAAAGACCATGCTTATATTAGTTGtttagttgaattttattgtgaTATTTGTTTTGTCACTGTTAGTACTTTGGACGCGTTTCAAAGACATGCTGCTGAAGTCCATGATAATTCCGATGGATTTGTTCTTCTTCAAAATGATAATtacaaacaaagaaaatatgCGTCGTTTTCGGGACGAACTACGGAAACTAGACAAAGTGTTAAACGCGAACATGCAGACACTGGGAATATTATAACTGGAAAACGTAGAAGTTCTTATAAACCACCAATTCTAGAATCGGAAGATTCTTCTGATGATAAAGTAATAAATCCGTTTATTCAGAAAATCCCAGGGACTATTTGTCCAATTTGTGGCAAagaatattcaaataataacaatatgTTTCGAcattataaaatgcatttTCAACCGGATGCGGATAAAGAAGCTATTGATGATTCTATTTATTGTTGTCCGGATTGTGGAGGAATGTTTAGTAGTACCGAATGGGAAAAACATAAAGGAATGCATAAGAAGAAAACTTGCAATGAATGCGGTAAAGTATTTCAATTTCAGTCGGAATTGGACCAACATAGAAGTGTCCATTTGAATCTCAAATTATATAGAGATTCTAAAACTCAATCTTATAAAAGTACAATGCTTAGTCCTAGTGATAACTCTGGTAATCTCGTTCTAATGTGCGAAGTTTGCGACCGAATGTTTACTTCAAAAGCACAACTAAAAGAACATAAACGGACTCATGAAACAATGCCAGTTTTAGAGTTAGCGGAAGGTAGCGAAAGCCCCAAACCGAAGAAATTTTCATGTTTAGAGTGCAATAAACATTACGTTGGATATGGTGGATTATGGGATCATAATAGAAAGAAGCATCCTGAAAGAAAATCTCAAGGCAATGCCAATTTTCCGAAAGAGTGTAAATATTGCAATAAAATATTCTACACAGGCGGTTCGTACTTTATGCACAAACAAATGCACGAAAGACAAAACCAAATGATGCAAAAAAAGCAAGATATGGAGCAAATGCAAAGTCAGGGTtcaactgaagaagaaataaaCGAAGATGACTCAGAATCTTACCACACTTGTAAGCGATGTTTCAAAgtattttcaactaaatccaatttgaaaaatcacatGAAATCGCATGGAAGTCCAACTactaaaagtttgaaaaaaggGAGTAAAAAAGTTTGGTGTAATATCTGCCATTGCGCTTTTGAAAATCTTGCAAGTTTAGAAAGACATAAAGCGGAAGGACATGGACATAATGATAATGATGATGGAATGCCCACATTATCAGATGAGCAAAGCGAAGGAGATCTTAAAGCACCGTTTGTTTTCACTTGTGATGTTTGCGTTCAGACTTTCACAACAAAAATAGCATTAAAGAAACATAAAGAAAAACACGCGCGTGAAGTTAGACCAAtgcttaaaaacaaaaatccagTAGTATATTGTAAATACTGTAAGATTTCTTTCGCTACTCCTTTCCAATTAGCAAACCACATGAAAGAAGAACATATGGAAGaacaaaaaacaacaaagaaagacaaaaattccaaatcttTCGGTTGTAAATTATGTGGCAAAGTTTTCGCTTCAGCAGCAGCTATGTACGCGCATCAAGGTTGGCATAAGCGAAGCGGCAAACTTGAATCACGAATCCAAGAACCGTTGATTGAAATTAAAGAAGAACCACGAGATGAATCTCCACAGTTTCAATGCTCTACATGTGGCGCAATTTTACCAAACGACACTGCCTTGCAGATTCATATTCTGGAAAGGCATAGAAACGTCAATGCGACTGTTTTACCAGCACGGTGTACTATGTGTAATCTAGATTTTAGTTCGCAAGAAGAGTATGACCAACACAAAAGTTTCCATGCAATGGTTGAAAAACAACCGAAAATGAAAACTTATGGCTGTACACAATGTCCAGCCGGGTTTAGTAAAGCGGAAATGTTAAAAACACATATAAGACAATTTCATAGAGATTTACAAGAACATAAATGTCATTTCTGTGGCCGTATTTTCGAAAAAGCCAATTCTCTAAGTATTCATTTGAAAGTTCATGAAAAACAGAAAGTTTTTACGGGAAGTGCAAAAGTCTCGCCTAGTAAAATAGTACCAAATGCTAGTAGGCCGGCGTCTAATcccaaaaatttgttttcttgttcTATTTGTAATAAAGGGTTTGAGTTGCCGAAAGATCTTAGATTGCATACGATACAAGCGCATCCATTCTGA
- Protein Sequence
- MTEPRLTNFTTCCRLCLSDSLDNLKSIFDESVDDRGLQQKISACLGVEILADDKLSTMVCPQCIEKVNNWQTYKLSCCENQTKLEQWMHMNSSDLTDGTIQIKEEPIDHDSLTPEVVINGEVPVKNEPMEEEYSELPPPLTPQGTEDDGDVEVISHSPSSQVTDDENNPRKCNLCGKYFCSAGNRKKHQRTIHGIKSQDSTTESEVGSLSQDERSQNSIDLQNRTETPKLKEPTTEEKKILFAAGLKLLQRNSTPPISFENLSKVENSYIEKCKAMVTMHETLRCACHNVTHPNLKGLLSHLRALRIWFPVFTCYHCMITFTDRSTSTRHYLRCPRSNLETLIKLSNLKKRSEVKTRLYQNYKCTQCRFMYSFHEDFCTHVDEDHSQIQIPYRCTCGRVFTTLEDYKDHAYISCLVEFYCDICFVTVSTLDAFQRHAAEVHDNSDGFVLLQNDNYKQRKYASFSGRTTETRQSVKREHADTGNIITGKRRSSYKPPILESEDSSDDKVINPFIQKIPGTICPICGKEYSNNNNMFRHYKMHFQPDADKEAIDDSIYCCPDCGGMFSSTEWEKHKGMHKKKTCNECGKVFQFQSELDQHRSVHLNLKLYRDSKTQSYKSTMLSPSDNSGNLVLMCEVCDRMFTSKAQLKEHKRTHETMPVLELAEGSESPKPKKFSCLECNKHYVGYGGLWDHNRKKHPERKSQGNANFPKECKYCNKIFYTGGSYFMHKQMHERQNQMMQKKQDMEQMQSQGSTEEEINEDDSESYHTCKRCFKVFSTKSNLKNHMKSHGSPTTKSLKKGSKKVWCNICHCAFENLASLERHKAEGHGHNDNDDGMPTLSDEQSEGDLKAPFVFTCDVCVQTFTTKIALKKHKEKHAREVRPMLKNKNPVVYCKYCKISFATPFQLANHMKEEHMEEQKTTKKDKNSKSFGCKLCGKVFASAAAMYAHQGWHKRSGKLESRIQEPLIEIKEEPRDESPQFQCSTCGAILPNDTALQIHILERHRNVNATVLPARCTMCNLDFSSQEEYDQHKSFHAMVEKQPKMKTYGCTQCPAGFSKAEMLKTHIRQFHRDLQEHKCHFCGRIFEKANSLSIHLKVHEKQKVFTGSAKVSPSKIVPNASRPASNPKNLFSCSICNKGFELPKDLRLHTIQAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -