Basic Information

Insect: Latheticus oryzae
Gene Symbol: SCRT1
Assembly: GCA_030157265.1
Location: CM058048.1:16738156-16739883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.0096 16.3 0.1 1 23 76 98 76 98 0.95

2 12 8.4e-06 0.00062 20.0 1.5 1 23 106 128 106 128 0.99

3 12 4.7e-06 0.00035 20.8 0.2 2 23 136 157 135 157 0.97

4 12 2.8e-06 0.00021 21.5 1.2 1 23 163 185 163 185 0.98

5 12 6.3e-05 0.0046 17.3 0.8 1 23 192 214 192 214 0.98

6 12 1.4e-05 0.001 19.4 1.6 1 23 220 242 220 242 0.96

7 12 4.5e-06 0.00033 20.9 0.6 1 23 248 270 248 270 0.98

8 12 1.8e-07 1.3e-05 25.3 0.8 1 23 276 299 276 299 0.96

9 12 7.1e-06 0.00052 20.3 0.3 1 23 305 328 305 328 0.96

10 12 2.8e-06 0.00021 21.5 2.6 1 23 334 356 334 356 0.99

11 12 6.6e-05 0.0048 17.2 0.4 1 23 362 384 362 384 0.94

12 12 0.00043 0.031 14.7 0.1 1 23 390 414 390 414 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.0096	16.3	0.1	1	23	76	98	76	98	0.95
2	12	8.4e-06	0.00062	20.0	1.5	1	23	106	128	106	128	0.99
3	12	4.7e-06	0.00035	20.8	0.2	2	23	136	157	135	157	0.97
4	12	2.8e-06	0.00021	21.5	1.2	1	23	163	185	163	185	0.98
5	12	6.3e-05	0.0046	17.3	0.8	1	23	192	214	192	214	0.98
6	12	1.4e-05	0.001	19.4	1.6	1	23	220	242	220	242	0.96
7	12	4.5e-06	0.00033	20.9	0.6	1	23	248	270	248	270	0.98
8	12	1.8e-07	1.3e-05	25.3	0.8	1	23	276	299	276	299	0.96
9	12	7.1e-06	0.00052	20.3	0.3	1	23	305	328	305	328	0.96
10	12	2.8e-06	0.00021	21.5	2.6	1	23	334	356	334	356	0.99
11	12	6.6e-05	0.0048	17.2	0.4	1	23	362	384	362	384	0.94
12	12	0.00043	0.031	14.7	0.1	1	23	390	414	390	414	0.94

Sequence Information

Coding Sequence: ATGGAGCCATCTGCCGAGGGCGGCAGCGACCGTCCAAACATCCTCCGCAAGAAACCCGCTTCTATGGATACAGTCAAAGTAAAAGAAGAACCAGTGCATAGCCAACCAATGGTATCCCGTCAAGACTCTCTCTTCACTTGTCTCGTATGTCAAGGAGAAGAAACAGTAGCCGGTGATGTTCGAGCTATAACCGCTCATATGAAAGCCGCCCACGATATTCGTCTTTACATTTGCGATGTTTGTGGTCAAGACTTCCGTAAACGTAATGAACTATCAGCTCATTTAGACGAACACGTTGCTGCTGAAGAAGGCGACTTTCAGTGCGAAGTTTGTAATCgtatttttagtaatttgcGACTGTTTCGAATCCATCGACGTATGCATTATCCACAGAATAAAGCTTGGCCGTGTGATACTTGTGGTAAAAAATACAGCAGCCGGAATTTATTAGAAGAGCATATCAATACGCATACTGGAGTCAGACCGTATGTTTGTCAACAGTGCGGTAAAGATTTTGCGTCGAAGTATACGTTCAGAGCTCATGAAAAGACACATGAAGTGAGGCCAAGACCGTATGCTTGCTCGCAATGTCCGAAGACTTTTTTAAGTCAACAGAACTTGTTGCAACATGAGAGGACTCATTCGGGGATTAAGGAGTTTAGCTGTCATCTATGCGGAAAGAGATTTGGCTCTGCTCATAATTTGGAAGTCCACTCAATCGTCCACACCGGCTATCGGCCTTTCGTTTGCGAAATTTGCCACAAAGCATTCGCTCGTAAAGCGGAAATCCGAGACCATGAGCGCACTCACACCGGAGAACGTCCCTATCAATGCGAAATGTGCGGCGCTACATTCTCCCAACGCTCTAATTTGCAATCCCACAAACGAGCCACTCATTTAGACGACAAACGTTACGTTTGTGTGGATTGTGGTAAAGGTTTCAAACGGCGTCGTTTACTGGATTATCACATGAAAGCGGCACATACAGGTGAAAGACCATTTAAATGTAACGTTTGCGACGCTACTTTTGTCTATCCCGAGCATTTCAAAAAGCATCGACGAATCCACACCGGGGAAAAACCGTTCTTATGTGAAGTTTGTGGCAAAGCGTTCAATAGTAGAGATAATCGAAATGCGCATAGATTTGTCCATTCGGATAAAAAACCTTACGAATGTTTAGTCTGTGGAGCGGGATTCATGAGGAAGCCGCTTTTGTATCAGCATATGCAAACGCAAGGCCATTTGAATGATACGATTGTAGTAAATCAGCCGAGATTGACAACAGATGATGATCAATTGGTGACTGTAAATTCCAAAGGTGAAATGGAAATTGTCGATCCAATGTCGTTGGCTGAAGCAGTAGATGGAGAATCAACAGTACCTGAAGATTCCAAACTGTATATTTCCGAGCATATTTTACAATCGCCTGCTGAACAAGAAGGAGGAGAGACTGAAGGACTTGAAACTGTAGAACATATTATTATTGATGGACAACATATCCGATTCGAGAATGAAGATGAAGAAATGGATACAATCACGGGAGAAACGTTAGCTGAAAGTGAAACGCAAATTATTGAAACGCCTGATGGACCTGTTCAATTAGTGAGAGTGAGGATACCCAACGAAAATGGAGAAGAAGAAGAAGCTTGGATTAAGATTGTGCCAGAATAA
Protein Sequence: MEPSAEGGSDRPNILRKKPASMDTVKVKEEPVHSQPMVSRQDSLFTCLVCQGEETVAGDVRAITAHMKAAHDIRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCDTCGKKYSSRNLLEEHINTHTGVRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPYACSQCPKTFLSQQNLLQHERTHSGIKEFSCHLCGKRFGSAHNLEVHSIVHTGYRPFVCEICHKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHLDDKRYVCVDCGKGFKRRRLLDYHMKAAHTGERPFKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSKGEMEIVDPMSLAEAVDGESTVPEDSKLYISEHILQSPAEQEGGETEGLETVEHIIIDGQHIRFENEDEEMDTITGETLAESETQIIETPDGPVQLVRVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167790;
90% Identity: iTF_00167790;
80% Identity: -