Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058056.1:6496982-6498522[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.21 15 6.2 2.2 1 23 41 63 41 63 0.98

2 16 0.00052 0.038 14.4 1.7 2 23 69 90 69 90 0.98

3 16 1.9e-06 0.00014 22.0 2.3 1 23 96 118 96 118 0.99

4 16 5.8e-07 4.3e-05 23.7 0.9 1 23 124 146 124 146 0.98

5 16 0.0001 0.0074 16.6 3.6 1 23 152 174 152 174 0.98

6 16 5.8e-06 0.00042 20.5 1.1 2 23 181 202 180 202 0.97

7 16 0.00024 0.017 15.5 0.4 1 23 207 230 207 230 0.96

8 16 0.0011 0.081 13.4 0.3 3 23 235 255 233 255 0.96

9 16 4.1e-06 0.0003 21.0 1.4 2 23 262 284 261 284 0.96

10 16 1.3e-06 9.6e-05 22.6 2.3 1 23 290 312 290 312 0.98

11 16 1.9e-05 0.0014 18.9 3.0 1 23 316 338 316 338 0.98

12 16 3.2e-06 0.00023 21.4 2.1 1 23 344 366 344 366 0.98

13 16 0.0041 0.3 11.6 3.2 1 23 372 394 372 394 0.96

14 16 1.5e-05 0.0011 19.3 1.4 1 23 400 422 400 422 0.99

15 16 0.0023 0.17 12.4 6.0 1 19 428 446 428 452 0.92

16 16 6e-05 0.0044 17.3 0.5 1 21 460 480 460 481 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.21	15	6.2	2.2	1	23	41	63	41	63	0.98
2	16	0.00052	0.038	14.4	1.7	2	23	69	90	69	90	0.98
3	16	1.9e-06	0.00014	22.0	2.3	1	23	96	118	96	118	0.99
4	16	5.8e-07	4.3e-05	23.7	0.9	1	23	124	146	124	146	0.98
5	16	0.0001	0.0074	16.6	3.6	1	23	152	174	152	174	0.98
6	16	5.8e-06	0.00042	20.5	1.1	2	23	181	202	180	202	0.97
7	16	0.00024	0.017	15.5	0.4	1	23	207	230	207	230	0.96
8	16	0.0011	0.081	13.4	0.3	3	23	235	255	233	255	0.96
9	16	4.1e-06	0.0003	21.0	1.4	2	23	262	284	261	284	0.96
10	16	1.3e-06	9.6e-05	22.6	2.3	1	23	290	312	290	312	0.98
11	16	1.9e-05	0.0014	18.9	3.0	1	23	316	338	316	338	0.98
12	16	3.2e-06	0.00023	21.4	2.1	1	23	344	366	344	366	0.98
13	16	0.0041	0.3	11.6	3.2	1	23	372	394	372	394	0.96
14	16	1.5e-05	0.0011	19.3	1.4	1	23	400	422	400	422	0.99
15	16	0.0023	0.17	12.4	6.0	1	19	428	446	428	452	0.92
16	16	6e-05	0.0044	17.3	0.5	1	21	460	480	460	481	0.94

Sequence Information

Coding Sequence: ATGGAATCCACTATATCTCCGAAACTCGAATTTAACCTCCAAAACCCTGAGGAAGTTTACAtcaaacaagaatttttttctagtcaAAGTGAAGTTGAagtaaatttggaaaatacaGCATATAAATGTGATTTATGTTTGGAAGAATTGAAAACATTTACCGAATATCGATCTCATAAAAAGCAGCATTTCATAGCAAAAAGAACATGTAAGATATGTCAGACAGTGTGCCAAAGTTTAAGTAAGTTAGAAATCCATATGAACGTGCATTTAGGTCTTAAACCGTATAAATGTTTACTTTGTGGAAAGAGTTTTGTGTCTAGTAATCATTTAAAGTTACATGGACGAAGTCATTCTGATGAAAAACGATATTCTTGTAATAAATgcacaaaagcgtttaggaaTTTAGGATCATTGCGAAGCCACATGCTTATACATAACAACATCAAAGAATTTGAATGCAAGAACTGTGGTGAAAACTGCAAGAATCTGCAAAACTACCGCAAACATTTAGAAACCCATGGCCAAGGAGTGGAAATTAAATGCGAATTGTGTGATAAAATCTTTGCTAGCGAGCGTCATCTTCAAAACCATTTGAACTCCCACACCGATTTGAAGTTTCCTTGCGAATATTGCGAGAGAATTTACCCGTCTTTGTATCGTCTCAAGCGTCATTTAAGCCGCGCTCATATTCCTAGTATTTGCGACGAAtgtaatgcaattttttacGACCGAGCCATGTACACTCGCCATCGCAAAGAGCACGCTGCCAGTAAACCCTCCACTTGCTCTTTCTGTGGGAAATCATTCGACAAACAAAAGAATCTCAGCGAGCATATTCGCCTTCAACACAAAGAAGACGGTGCACATAAATGCAAATTATGCGacaaagtttttaaaaacggGGCTTTGCTGCGCAATCATATTAAAACTCatgataaatgtttcaaatgtaaattttgtagtAAATTATTTAGCTCTCGGTATAATCTCGAAACCCATTTAGTCACTCATACCGGTGAGAAGAAGCATAAATGTGAGATTTGCGGTAATGTTTATTCAACGAAAAGTAGTTTAAAGAATCACAAAGCGACTCATAGTGATGCgaagaattttaaatgtgATCAATGTCCGAAATTGTTTAAAACGAATCGGAGATTGTATGTTCATAAGTTTTCGCATGCGACTGAAGAGAAATATCAGTGTGAGATTTGTAACGCTAGGTTTAGAGTGAAACAGTATTTGAAGTATCATATGATCaaacattcaaataaaaaaccttATGAATGCAAAGTTTGTCAAAAGAagtttaaacataaaaaatcgtGGGAAAAACACTCCAGTCATgataaacattcaaaaataaaacaagaaattcATGAATGTACGGATTGCAATGAAGTGTTTGAGCGTAAAACTGATTTATTAGAACACAAAAGATCACAACCCCAATGTAAAATAGtagaaattaaaagtgaaattagTTCTTAA
Protein Sequence: MESTISPKLEFNLQNPEEVYIKQEFFSSQSEVEVNLENTAYKCDLCLEELKTFTEYRSHKKQHFIAKRTCKICQTVCQSLSKLEIHMNVHLGLKPYKCLLCGKSFVSSNHLKLHGRSHSDEKRYSCNKCTKAFRNLGSLRSHMLIHNNIKEFECKNCGENCKNLQNYRKHLETHGQGVEIKCELCDKIFASERHLQNHLNSHTDLKFPCEYCERIYPSLYRLKRHLSRAHIPSICDECNAIFYDRAMYTRHRKEHAASKPSTCSFCGKSFDKQKNLSEHIRLQHKEDGAHKCKLCDKVFKNGALLRNHIKTHDKCFKCKFCSKLFSSRYNLETHLVTHTGEKKHKCEICGNVYSTKSSLKNHKATHSDAKNFKCDQCPKLFKTNRRLYVHKFSHATEEKYQCEICNARFRVKQYLKYHMIKHSNKKPYECKVCQKKFKHKKSWEKHSSHDKHSKIKQEIHECTDCNEVFERKTDLLEHKRSQPQCKIVEIKSEISS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -