Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058051.1:12921848-12923846[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 0.00012 22.3 5.7 1 23 155 177 155 177 0.99

2 12 4.7e-07 3.5e-05 24.0 0.8 1 23 183 205 183 205 0.95

3 12 0.0054 0.4 11.2 0.1 1 23 241 263 241 263 0.97

4 12 5.1e-08 3.7e-06 27.0 1.9 2 23 270 291 269 291 0.97

5 12 2e-07 1.5e-05 25.1 0.8 1 23 297 319 297 319 0.97

6 12 2.9e-06 0.00021 21.5 0.9 1 23 325 347 325 347 0.98

7 12 2.2e-05 0.0016 18.7 0.4 1 23 353 375 353 375 0.94

8 12 0.0001 0.0075 16.6 0.7 3 23 383 403 381 403 0.96

9 12 2.8e-07 2e-05 24.7 2.0 1 23 409 431 409 431 0.98

10 12 6.7e-05 0.0049 17.2 0.8 1 23 437 459 437 459 0.99

11 12 2e-06 0.00015 22.0 0.7 1 23 465 487 465 487 0.98

12 12 3.1e-06 0.00023 21.4 0.5 1 23 493 515 493 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	0.00012	22.3	5.7	1	23	155	177	155	177	0.99
2	12	4.7e-07	3.5e-05	24.0	0.8	1	23	183	205	183	205	0.95
3	12	0.0054	0.4	11.2	0.1	1	23	241	263	241	263	0.97
4	12	5.1e-08	3.7e-06	27.0	1.9	2	23	270	291	269	291	0.97
5	12	2e-07	1.5e-05	25.1	0.8	1	23	297	319	297	319	0.97
6	12	2.9e-06	0.00021	21.5	0.9	1	23	325	347	325	347	0.98
7	12	2.2e-05	0.0016	18.7	0.4	1	23	353	375	353	375	0.94
8	12	0.0001	0.0075	16.6	0.7	3	23	383	403	381	403	0.96
9	12	2.8e-07	2e-05	24.7	2.0	1	23	409	431	409	431	0.98
10	12	6.7e-05	0.0049	17.2	0.8	1	23	437	459	437	459	0.99
11	12	2e-06	0.00015	22.0	0.7	1	23	465	487	465	487	0.98
12	12	3.1e-06	0.00023	21.4	0.5	1	23	493	515	493	515	0.98

Sequence Information

Coding Sequence: atgaaCGAAGAAACTCCTTTAAATATTTGTCGCGCTTGTTTAACAGAAGTAGGCGAATTCCAATCAATATTTGTACCAGATGAAGAAACGGGACTTGCAATACATCTTTCAGAAATGATGATGGCTTTTGCCTCTGTACAGgTTACTTTTGGCGATGGTTTACCTGAGCAAATATGTTCAACTTGCGCTCGGGATACTGTAAGAgcttacttatttaaattgaaatgtgAAGAATCCGATAGGAATCTCCGAAGTCGTTTAGGTCGAAGCCCTCCAATagattcaaaaagtttttttgaagataaaaGTAGTGAAAGTGTTTTCAATATTGTGATTAAACCTGAGCTGAATTCCGAAGATTCACAAAACAATTTAGAtgattttgacaattttgacGATCATGATAGAAGTGAGAGTGACCTTGGAGTGTCTGAACCTTTTCCTGATGATTGTGAAGTTGAGTTTAAGTGTCCACATTgtacaaaaacatttaataaacaatCTAACTTTGATAGACATGTTAAAACACATACTTCGATAAAAGCATACAGTTGTAATATTTGTAATAAGACCTTCTCTCGTAATGATCTATTATTAAGACATAAGATTGCCCATGCTATGAAAATGGCAGATCACAAGTTCGATTTCGATAATAACAGTGAAGAAACCGAGCAAGATGATGATAATGATACTATTATAATCAAAACCGAAACTACTTTGTATCCTTGTTCAGAATGCAGCTTGTTATTTGTAAAGAAAGATGAACTCGACTTGCATTTGCAAGAACATAAAAATAGAGAAGATATAGTTTGTAAAATCTGTGGTAAAAAGTTCAGTAAACAACCACACCTCAACAGACATATGAAAATACATTCAAAGAATAAACCCCACGTTTGTCCTACTTGTAACAAAGGCTTTGTGAGATCTGAACAATTGAACAACCATATGAATATACATTCTGGGATTAAACCTCATGTTTGCGCTATTTGTTTAAAAGGTTTTAACCAAATCTCAAATTTAAAGGACCATATGCGTACGCATAACGGCGAAAAGCCTTTTCTTTGTGCAACTTGCGGAAAAGGTTTCAATCAATTGGGTAACCTTCGGCAGCACACCATTAGACACAGCGGCATTAAGGCCCATCTTTGTAGTACTTGTGGCAATGGTTTCGCCAGTAAAGGAGAATTGTCAGCACATTTACGAAAACATACAGGCGCTCGTCCGTTCGTCTGCCCTATATGTAACCACGGCTTTACAACATCAAGTTCATTGACAAAACATAAACGAATTCATTCAGGCGAGAAACCTTATGAATGCGACGTatgtaaaatgaaattttcacgTTCAGGGATTCTGGCAAGACATAAAAGAACACATACAGGCGAGAAACCATACGTCTGCAAGTTTTGTGCAAAAGCATTTTCGCAATCTAATGATTTGACGTCGCATTTACGAATACACACTGGAGAAAAACCATATATTTGTGATGCTTGCGGGCAAGCGTTCAGACAGAGTTCTGCATTGAAAACTCATAAAAAAACACACATTGATAGAAATTCTATAATTGATAGCAAACCTGTTAATGTAATGGGGATGATGCATGCGCCGTTTTTAGCTTGA
Protein Sequence: MNEETPLNICRACLTEVGEFQSIFVPDEETGLAIHLSEMMMAFASVQVTFGDGLPEQICSTCARDTVRAYLFKLKCEESDRNLRSRLGRSPPIDSKSFFEDKSSESVFNIVIKPELNSEDSQNNLDDFDNFDDHDRSESDLGVSEPFPDDCEVEFKCPHCTKTFNKQSNFDRHVKTHTSIKAYSCNICNKTFSRNDLLLRHKIAHAMKMADHKFDFDNNSEETEQDDDNDTIIIKTETTLYPCSECSLLFVKKDELDLHLQEHKNREDIVCKICGKKFSKQPHLNRHMKIHSKNKPHVCPTCNKGFVRSEQLNNHMNIHSGIKPHVCAICLKGFNQISNLKDHMRTHNGEKPFLCATCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCAKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIDRNSIIDSKPVNVMGMMHAPFLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -