Lory007847.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Latheticus oryzae
Gene Symbol
-
Assembly
GCA_030157265.1
Location
CM058052.1:8686355-8688198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7e-06 0.00051 20.3 0.3 1 23 247 269 247 269 0.98
2 12 2e-06 0.00014 22.0 7.2 1 23 275 297 275 297 0.98
3 12 3e-06 0.00022 21.4 0.8 1 23 303 325 303 325 0.99
4 12 0.026 1.9 9.1 3.1 1 23 331 353 331 353 0.95
5 12 0.00031 0.023 15.1 0.9 1 23 359 381 359 381 0.98
6 12 1.6e-09 1.2e-07 31.7 3.3 1 23 387 409 387 409 0.99
7 12 6.9e-06 0.00051 20.3 3.5 3 23 416 436 414 436 0.96
8 12 2.9e-06 0.00021 21.5 2.8 1 23 442 464 442 464 0.99
9 12 3.3e-07 2.4e-05 24.4 0.8 1 23 469 491 469 491 0.99
10 12 1.4e-07 1.1e-05 25.6 1.7 2 23 498 519 497 519 0.97
11 12 7.3e-08 5.3e-06 26.5 1.1 1 23 525 547 525 547 0.97
12 12 2.8e-06 0.00021 21.5 1.0 1 23 553 575 553 575 0.98

Sequence Information

Coding Sequence
atGTCGGCAGAAATCTCTTTTGAGGAAAGAACCACCAATGAAATCGCGATGGAAAACATAATTAACGTTGCCGACTGTTGTAGAGCTTGCTTACGAATAGATTGTTCTCTAACACCCACAAGTGCCCAAGATAATGACTCTATAAAGTTTTGTGACAAACTTTTGTCTTGTGTTTCAGAAGTTatGTGGCAGAAAGAAGGTTTACCGTCTCTCATATGTTCGACTTGTATAGAGCGTCTTCGTGTAGCTTATGATTTTCGAAATATATGTTTGCAATCTGATCACACTTTACATCGTTATATAAGCCATCTTCAAGAAGATAAACAAAATATGGGCCCTAGACCATTATCAACACCAACAAAGTTTGAATTTGCCCTTCCAGCTACAAACCATGACGACATTCCTATAATAGTTGATGAACCTCAAAACGCGGAGTATTTGCATTTAAAACATTTCTTAGACAGTGATGAAGATCTTGCTAAGAGTAATTCATTAGAAGATGTAACGAAATCAGGAAGTGCAAGTCCAGAATCCGCTTCAGGTTTTCTAAGCACAAACTTGCCTCCGCAACAGCCTCAACAACTGGATTCGCAAATCCAAACTCAACCTGTTGATCCAGTTCCTCAAATCCAACAAACTCAAATTCAACCACGTCAAGTTATTAAGCGGACTACTGGAGTTCAAGTGCGTCCTCCAACTCCTACCTCCGGACTTCTGGATAAAAACGATGTAAAGCCATTTATTTGCGCTGTTTGTGGTAAAGGATATCGAAAAAATGCCAATTTACGAATACACAATCGAACTCACACCGGCGAAAAACCGTTTGAATGTAAATATTGCGAGAAACGCTTTTACCATTCGTCGCATTTACGCGAACACATTCGTCGACATACCGGGGAAAAACCGTTTCAATGCGCTGTCTGTAATAAACGTTTCACGATTAAAGGTGAATTAAACATGCATATGAAATCGCATACGGGGGAAAAACCGTACGCGTGCACTTGCTGCGATCGTAGATGTTTAACCGCTGCCGATCTTAGAGTACACATGCGCACTCATACCGGGGAAAAGCCGTTTAATTGCGTGACTTGCGGGAAAAAATTCGCTAGTACTTATATTTTGAACTCGCATATTAAAACCCACACCGGGGAACGTCCGTATACTTGTACCGTTTGCGGAAAATCCTTCACTCAATCTTCTCATCTCAACGTACATATGCGAAAGCATACAGGAGAAAAAGTTTGTTGCAAAGTTTGCGATGCTAAATTTACTCATTCTTCACAACTCACAGTCCATATGCGAGAACATACGGGAAAGCAGCCGTACAAATGTACAATGTGTGATAAAATCTGCAATTATGCTTCTGAGTTGCAAACGCACATGATGAAGCACACCGGGGAGAAGTTCACATGTGTCACGTGCGATAAGAAGTTCACATCAGCAGCATACTTGCAAGAACACATTAGGACGCACACCGGGGAAAATTTGTCAACTTGCTCTGTCTGCGATAGGCAGTTTACAAGACCgcaatatttacaaaaacataTGAGAACGCATACAGGGGAAAAACCGTTTGCTTGTTTCACATGCGGTAAAAGATTCACACAAAGCTCATCGCTTAAAGTACATATAAGAATACATACAGGGGAAAAACCATATTCATGCGTGATTTGCGATAGGAGGTTTACGACATCGTCAGATTTATCAGCacataataaaaaacacaagAAATATATTAATTTGTAA
Protein Sequence
MSAEISFEERTTNEIAMENIINVADCCRACLRIDCSLTPTSAQDNDSIKFCDKLLSCVSEVMWQKEGLPSLICSTCIERLRVAYDFRNICLQSDHTLHRYISHLQEDKQNMGPRPLSTPTKFEFALPATNHDDIPIIVDEPQNAEYLHLKHFLDSDEDLAKSNSLEDVTKSGSASPESASGFLSTNLPPQQPQQLDSQIQTQPVDPVPQIQQTQIQPRQVIKRTTGVQVRPPTPTSGLLDKNDVKPFICAVCGKGYRKNANLRIHNRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELNMHMKSHTGEKPYACTCCDRRCLTAADLRVHMRTHTGEKPFNCVTCGKKFASTYILNSHIKTHTGERPYTCTVCGKSFTQSSHLNVHMRKHTGEKVCCKVCDAKFTHSSQLTVHMREHTGKQPYKCTMCDKICNYASELQTHMMKHTGEKFTCVTCDKKFTSAAYLQEHIRTHTGENLSTCSVCDRQFTRPQYLQKHMRTHTGEKPFACFTCGKRFTQSSSLKVHIRIHTGEKPYSCVICDRRFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00753180;
90% Identity
-
80% Identity
-