Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058048.1:313704-317120[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.9e-05 0.0014 18.9 4.2 2 23 12 34 11 34 0.97

2 18 3.3e-07 2.4e-05 24.5 0.4 1 23 39 61 39 61 0.98

3 18 2.9e-05 0.0021 18.3 0.3 1 23 67 89 67 89 0.96

4 18 1.5 1.1e+02 3.5 0.2 6 23 108 126 108 126 0.91

5 18 9.2e-05 0.0068 16.8 3.6 2 23 130 152 129 152 0.96

6 18 4.7e-05 0.0035 17.7 1.0 2 23 162 184 162 184 0.96

7 18 1.5e-06 0.00011 22.4 0.6 1 23 189 211 189 211 0.99

8 18 8.1 5.9e+02 1.2 1.7 1 8 217 224 217 225 0.87

9 18 0.00039 0.028 14.8 5.4 1 23 229 252 229 252 0.96

10 18 6.4e-05 0.0047 17.3 0.6 1 23 257 279 257 279 0.95

11 18 5.3e-06 0.00039 20.7 2.9 1 23 285 308 285 308 0.98

12 18 0.0011 0.08 13.4 0.4 6 23 315 332 315 332 0.99

13 18 0.021 1.5 9.3 0.6 2 20 336 354 335 356 0.92

14 18 0.086 6.3 7.4 0.3 2 16 367 381 367 389 0.86

15 18 8.3e-06 0.00061 20.1 0.1 1 23 394 416 394 416 0.96

16 18 2e-06 0.00015 22.0 0.8 1 23 422 444 422 444 0.98

17 18 3.3e-08 2.4e-06 27.6 3.4 1 23 450 473 450 473 0.98

18 18 3.2e-05 0.0023 18.2 3.2 1 23 479 501 479 501 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.9e-05	0.0014	18.9	4.2	2	23	12	34	11	34	0.97
2	18	3.3e-07	2.4e-05	24.5	0.4	1	23	39	61	39	61	0.98
3	18	2.9e-05	0.0021	18.3	0.3	1	23	67	89	67	89	0.96
4	18	1.5	1.1e+02	3.5	0.2	6	23	108	126	108	126	0.91
5	18	9.2e-05	0.0068	16.8	3.6	2	23	130	152	129	152	0.96
6	18	4.7e-05	0.0035	17.7	1.0	2	23	162	184	162	184	0.96
7	18	1.5e-06	0.00011	22.4	0.6	1	23	189	211	189	211	0.99
8	18	8.1	5.9e+02	1.2	1.7	1	8	217	224	217	225	0.87
9	18	0.00039	0.028	14.8	5.4	1	23	229	252	229	252	0.96
10	18	6.4e-05	0.0047	17.3	0.6	1	23	257	279	257	279	0.95
11	18	5.3e-06	0.00039	20.7	2.9	1	23	285	308	285	308	0.98
12	18	0.0011	0.08	13.4	0.4	6	23	315	332	315	332	0.99
13	18	0.021	1.5	9.3	0.6	2	20	336	354	335	356	0.92
14	18	0.086	6.3	7.4	0.3	2	16	367	381	367	389	0.86
15	18	8.3e-06	0.00061	20.1	0.1	1	23	394	416	394	416	0.96
16	18	2e-06	0.00015	22.0	0.8	1	23	422	444	422	444	0.98
17	18	3.3e-08	2.4e-06	27.6	3.4	1	23	450	473	450	473	0.98
18	18	3.2e-05	0.0023	18.2	3.2	1	23	479	501	479	501	0.98

Sequence Information

Coding Sequence: ATGCATAAAGATGAACTACCAAAGCCGATAAAATATTGCAAGATTTGCGATCGTACTTTTAGTGATcgaaagaattatttgcatCATGAAAGAACGCAACATAGTGGAGTCAGATTTGTGTGTGAAATTTGTAGTAAAAAACTTACAAGAGCGAGTGCTTTACGAGATCATATGAGAACACATACTGGAGAGAAACCTTTCGCTTGTCTCAATTGTGATAAGAAGTTTGCGTCGAAGAAACTACTAAGAGCGCATGCACTGATTCATAAGAAGAATGTAATGAATGTGTCAGAAATTTTGAACGAGAAGTATTTAAAATGTTGCGGTTTTACTTTCATCAACAAACAAGGATACGACGAACATCAACTATTTAAACACGTTTCTGTAAAATGTGAATTCTGTGGTGGGAAATTCCGAAACTCTAGTTCTTTACGTCATCATCAATCGAGAAAACATAGAGATGAATATCAAAAGCCAACGAATTATTGCAAGATTTGCGATCGAAGTTTTAGCGAAAGAAGCGCTTTTGTAACTCATGAAAAAACGCAACATTATGGAATCAGATTTGAGTGTGAGATTTGTGGCAGAAAAATTACATCGCAATTGAGTTTACGAAACCATATGAGAACACATACTGGAGAGAAGCCTTTTGATTGTCAACATTGTGACAAGAAACAAAAGAAGCACAAATGTACAAAATGCAAGAAACTTTTTGATACTTCCAAGCAGCTTCGCAATCATCGTAACAACATCCacgttgaaaaaaaatttgcttgtGATCAATGTCCTAAATCATTTAAAACTCGTCTGACTCTTCAAGTCCATTCAGTTACTCATTCGCaacaaaaaatcttcaaatgtAAACAATGCGATGCTTCTTTCCGAAGCACAAGTTTATTATATCGTCATCGTCGAAGAGACCACATTAAAGATTTACAATGCTGTGGTAAATTTTTCGCCGATCGAAAACTCTACGAAAAACATCAATTAACACACGTTTCTGTTAAATGCGAATTCTGTAGCAAAATATTCCGAAATTGgattattttaaagaaacatcATACTTTATACAAAGGTGAATGCAATCAAGCTTTGAATTATTGCGAAATTTGCGACCGTTTTTTTGCGACTAGAGGGAGTTATTTATTCCATGATAGAAGAGTTCATAAaggaatcaaatttttatgtgatACTTGTGGGAAAGAAGTTACTTCACAAGTTAGTTTAGAAATTCATATACGGACGCATACTGGAGAAAAACCTTATGATTGTCCACAATGTGAGAAGAAGTTTGTGTCGAAGACTCAATTGAACACTCATGTTAAAGTTCATACGGATCAAAAATCGTATGAATGTGAACATTGTGACAAGAAGTTTAAGCAAAGATCGAATCTAACGACACATATTAAATCTGTACATGAAAAGCAGCGACCTTTTGAGTGCCCGATTTGTCATAAGACGTTTTTAACTAAAAGTTTATTGAGTGAACATAGGAAAAAACACTTGGAAACTGGAGTCAAATAG
Protein Sequence: MHKDELPKPIKYCKICDRTFSDRKNYLHHERTQHSGVRFVCEICSKKLTRASALRDHMRTHTGEKPFACLNCDKKFASKKLLRAHALIHKKNVMNVSEILNEKYLKCCGFTFINKQGYDEHQLFKHVSVKCEFCGGKFRNSSSLRHHQSRKHRDEYQKPTNYCKICDRSFSERSAFVTHEKTQHYGIRFECEICGRKITSQLSLRNHMRTHTGEKPFDCQHCDKKQKKHKCTKCKKLFDTSKQLRNHRNNIHVEKKFACDQCPKSFKTRLTLQVHSVTHSQQKIFKCKQCDASFRSTSLLYRHRRRDHIKDLQCCGKFFADRKLYEKHQLTHVSVKCEFCSKIFRNWIILKKHHTLYKGECNQALNYCEICDRFFATRGSYLFHDRRVHKGIKFLCDTCGKEVTSQVSLEIHIRTHTGEKPYDCPQCEKKFVSKTQLNTHVKVHTDQKSYECEHCDKKFKQRSNLTTHIKSVHEKQRPFECPICHKTFLTKSLLSEHRKKHLETGVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -