Lory003327.2
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058049.1:12060692-12063369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.8 2.1e+02 2.6 1.5 3 23 219 239 217 240 0.93 2 18 5e-05 0.0036 17.6 1.9 1 23 284 306 284 306 0.98 3 18 1.3e-05 0.00099 19.4 0.2 1 23 312 335 312 335 0.97 4 18 1.1e-05 0.00083 19.6 0.2 1 23 341 363 341 363 0.98 5 18 2.1e-07 1.5e-05 25.1 1.1 1 23 369 391 369 391 0.98 6 18 8.4e-05 0.0061 16.9 0.7 1 23 397 419 397 419 0.98 7 18 2.4e-06 0.00018 21.7 3.2 1 23 425 447 425 447 0.98 8 18 7.6e-06 0.00056 20.2 0.8 2 21 454 473 453 474 0.93 9 18 0.0012 0.088 13.3 2.5 3 23 484 505 483 505 0.96 10 18 0.0038 0.28 11.7 1.0 2 23 513 535 512 535 0.94 11 18 0.00051 0.038 14.4 2.0 1 23 553 576 553 576 0.92 12 18 4.4e-06 0.00033 20.9 1.5 1 23 605 627 605 627 0.98 13 18 1e-05 0.00074 19.8 2.1 1 23 633 656 633 656 0.97 14 18 0.00086 0.063 13.7 1.2 1 23 662 684 662 684 0.98 15 18 2.1e-06 0.00016 21.9 1.9 1 23 690 712 690 712 0.97 16 18 2.5e-05 0.0018 18.5 0.8 1 19 718 736 718 737 0.97 17 18 0.00017 0.013 15.9 4.7 1 23 746 768 746 768 0.97 18 18 0.00039 0.029 14.8 2.1 2 23 775 796 774 796 0.96
Sequence Information
- Coding Sequence
- atggaaaataaagtGTTGCAGATTGCGAGTGATTATGGACAAGAACAAGCTGTGGAAATTGTTGCAATTAATACAATTTGTCGATTATGTGCCAGTCAGAATGAGCGTTTGATTGGGATTTTTAGTGAAGAAGGAATTAGCAATGatctttcaaataaaattaattcgtaTTTGCCAGTTAAAGTAGCTGTTGATGATGGATTGCCTTTACAATGCTGTTGGAGTTGTACATCAACATTGCTGACTTACCACGAACTAGTTTTACGAACTGTCGAAAccgataaaaaattgaaaactttgcAAGTGCTTCCAGAGAAACAAGACGAAGATGATGGAGGCTTTGACTGCCCTACCAGCACTCTTAGTGACGACAATGAAGAAGGGATGGAGTCGAAATGCACCAGCACAAGTCTGAATGGTTTCAGTTCCAAAAAATCTTCTcgcaaaaagaaaaaacaagaaacagTCACCTGTTTACAATTACAAGAACCTACGCCTTTAGACTCATACATAAACGACATCGAACAACAATTAATCGACCCCGAACTCGTCGACAATCCCGATTACAAAATCAACGAAAGCGATAATGAGGAAAAAGCCACCGACGCTGTTGGTTTCCAATCAGACGGCGAAGAAGAACGTCCGTACTTCGGCTGCCAATTCTGTGcttctattttcttttctcGCTCGAGCCTTGGCGATCACGTCAAACAACACCACGACAAAGACTACGATAAACAAATGAATCTTGCAATCgaagaaaacataaaaaaagaaaaacggAAACATAACAAAATCGACCAAGAAGCGATAAACGCCGCTAAAGTCGTCGTCGATGGTCGCATTTATTACAATTGTAAAGAATGTGGTAAAAACTTACATTCCCCGTACACCTACACATGGCATATGCGCATCCATACTGGCGAACGACCCTACGTTTGCGATTTATGCGGAAAACAATTTAGAGTATCTCAGGGTTTAGTGCGACACTTGCGCGAAACTCACGAAGGTATTAAAAAATTCCCTTGCGATCTCTGTGGACGGATGTTTGCGACAAGACGAAACGTCGAAGAACATCGTCGAATTCACACAAACGAACGACCGTACGTTTGTGATTTATGTGGAAAGTCTTTCAAACAAAAAGCTTCGCTTTTTGTACACAAAAGATCGCATAAGAATTACTTTCCATTTAAATGCAGTTACTGCAATCAGGGATTCCGCACTAAACCCCCGCTTTTAGTGCATATAACGAGACACACTGGGGAAAAACCGTATAAATGTGACGTTTGTGGCAGATGTTTTCGAATTAAATACGAATTGAAACGACATAGACTTATACATTCAGACGAAAAACCGTGGGTGTGCAATATTTGTGGTTATAGTTTCAGACAAAAACGATATTTGAGAAACCATACGAAGAAAGTCATCCGGGAAGATAATACAGGTTTTTGTGAACTTTGTCAAAAGACGTTGAGCAGAGCTCGGGATTTAAAACGGCACGTTTTGATGTgtcattctaaaaaaatacaagaaataGAATGCGTTCATTGttcagaaaaatttgaaacaagtCTTAAATTGAACAAACATCTACAAGAAGTTCATCAATTGCAGCCGAAACGACACAGACGCagaaaaatcgaaattatGCCGAAGTTTTTTTGCGATGTTTGCGATAAAGGTTTCACGCGCAAACATGGAATGGAACAGCACAAATCGCAAGCACACGGGTTTCAAAtcgaatttaaaaaacacaaaaatttggaAGTTTTAGAAAAGTGTAGAAGTAAAGATTCCGATGGtaagattttttataagtGTGACTTTTGTCAAAGGCCGTTCGCTCAAAGTTATAATTTGATGCGACATAGGACTATACATACAGGAGTTCGGAAATATTTTTGTCATATTTGTGGATTGAGTTTTCGTATGTCGAATGGTTTAACCAGACACATTAATTCTTTCCATAATGGTATTAAAAACTTCAGTtgtgaaatttgtaaaaagaaGTTCACTGCAAGATCAACAAGAGATGAACATATGAATATTCATACAAATAATCGACCGTTTGTGTGTGAAGTTTGTGGGAAGAGTTTTAAACAGAAAGCTTCTTTGCATGTGCATAGAATGTTTCATTCGGATATATATAGATTTGAGTGTGATACCTGCGGGAAGAAGTTCAGAAGAAACCAAGATTTGAAAGTGCATAGTTGGTTGCATACCGGACATAGACCGCATTCATGTAATAAGTGTAAAGCTGCGTTTAGACTGAAACATGACTTGACCAGGCATTTAAGAattcatgaaaaattaactGAATGTGTGTGCAACACCTGCGGATCGGTATTCAGTCAAGAACGGTACTTGAAAGTGCATAAGAAGATTCACATAAGTACGCCATTAGTATTGGTTTGTAATAATTGA
- Protein Sequence
- MENKVLQIASDYGQEQAVEIVAINTICRLCASQNERLIGIFSEEGISNDLSNKINSYLPVKVAVDDGLPLQCCWSCTSTLLTYHELVLRTVETDKKLKTLQVLPEKQDEDDGGFDCPTSTLSDDNEEGMESKCTSTSLNGFSSKKSSRKKKKQETVTCLQLQEPTPLDSYINDIEQQLIDPELVDNPDYKINESDNEEKATDAVGFQSDGEEERPYFGCQFCASIFFSRSSLGDHVKQHHDKDYDKQMNLAIEENIKKEKRKHNKIDQEAINAAKVVVDGRIYYNCKECGKNLHSPYTYTWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHEGIKKFPCDLCGRMFATRRNVEEHRRIHTNERPYVCDLCGKSFKQKASLFVHKRSHKNYFPFKCSYCNQGFRTKPPLLVHITRHTGEKPYKCDVCGRCFRIKYELKRHRLIHSDEKPWVCNICGYSFRQKRYLRNHTKKVIREDNTGFCELCQKTLSRARDLKRHVLMCHSKKIQEIECVHCSEKFETSLKLNKHLQEVHQLQPKRHRRRKIEIMPKFFCDVCDKGFTRKHGMEQHKSQAHGFQIEFKKHKNLEVLEKCRSKDSDGKIFYKCDFCQRPFAQSYNLMRHRTIHTGVRKYFCHICGLSFRMSNGLTRHINSFHNGIKNFSCEICKKKFTARSTRDEHMNIHTNNRPFVCEVCGKSFKQKASLHVHRMFHSDIYRFECDTCGKKFRRNQDLKVHSWLHTGHRPHSCNKCKAAFRLKHDLTRHLRIHEKLTECVCNTCGSVFSQERYLKVHKKIHISTPLVLVCNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -