Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058048.1:382029-386606[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-05 0.0034 17.7 4.0 1 23 7 29 7 29 0.98

2 18 0.16 12 6.6 4.8 1 23 35 58 35 58 0.97

3 18 8.8e-06 0.00064 20.0 0.6 2 23 63 84 62 84 0.97

4 18 0.00049 0.036 14.5 0.0 2 21 88 107 87 108 0.94

5 18 0.00099 0.072 13.5 1.9 2 23 119 141 119 141 0.96

6 18 1.7e-06 0.00012 22.2 0.5 1 23 146 168 146 168 0.96

7 18 1.3e-05 0.00096 19.4 2.7 1 23 174 196 174 196 0.98

8 18 5e-08 3.6e-06 27.0 0.4 1 23 202 225 202 225 0.98

9 18 0.012 0.91 10.1 0.1 1 21 233 253 233 256 0.89

10 18 0.00013 0.0092 16.3 2.6 1 23 279 302 279 302 0.96

11 18 0.096 7.1 7.3 0.5 6 23 309 326 309 326 0.98

12 18 0.0029 0.21 12.0 0.5 1 23 329 352 329 352 0.93

13 18 3.1e-06 0.00023 21.4 0.2 1 23 389 411 389 411 0.96

14 18 0.00037 0.027 14.9 5.8 2 23 418 439 417 439 0.97

15 18 7e-06 0.00051 20.3 4.1 1 23 445 468 445 468 0.95

16 18 7.1e-08 5.2e-06 26.6 1.6 1 23 474 496 474 496 0.99

17 18 2.1e-05 0.0015 18.8 0.2 3 23 504 524 502 524 0.97

18 18 0.02 1.4 9.4 0.3 2 23 536 558 535 558 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-05	0.0034	17.7	4.0	1	23	7	29	7	29	0.98
2	18	0.16	12	6.6	4.8	1	23	35	58	35	58	0.97
3	18	8.8e-06	0.00064	20.0	0.6	2	23	63	84	62	84	0.97
4	18	0.00049	0.036	14.5	0.0	2	21	88	107	87	108	0.94
5	18	0.00099	0.072	13.5	1.9	2	23	119	141	119	141	0.96
6	18	1.7e-06	0.00012	22.2	0.5	1	23	146	168	146	168	0.96
7	18	1.3e-05	0.00096	19.4	2.7	1	23	174	196	174	196	0.98
8	18	5e-08	3.6e-06	27.0	0.4	1	23	202	225	202	225	0.98
9	18	0.012	0.91	10.1	0.1	1	21	233	253	233	256	0.89
10	18	0.00013	0.0092	16.3	2.6	1	23	279	302	279	302	0.96
11	18	0.096	7.1	7.3	0.5	6	23	309	326	309	326	0.98
12	18	0.0029	0.21	12.0	0.5	1	23	329	352	329	352	0.93
13	18	3.1e-06	0.00023	21.4	0.2	1	23	389	411	389	411	0.96
14	18	0.00037	0.027	14.9	5.8	2	23	418	439	417	439	0.97
15	18	7e-06	0.00051	20.3	4.1	1	23	445	468	445	468	0.95
16	18	7.1e-08	5.2e-06	26.6	1.6	1	23	474	496	474	496	0.99
17	18	2.1e-05	0.0015	18.8	0.2	3	23	504	524	502	524	0.97
18	18	0.02	1.4	9.4	0.3	2	23	536	558	535	558	0.94

Sequence Information

Coding Sequence: ATGCACGTTGAAAAGCGCTATTCTTGCACTCAATgcgacaaaattttcaaaactcgTCATGAAATGAAAACTCACGAACTTACTCATACATCATTGAGGACACACAAATGTAAAGAATGCGAAGCTGATTTTCGTTGTGTCAGTGCTTTGTATCGTCATCGTCGAAAAATGCACATATCAGATTTGAAATGTGAAATCTGTGGTAAAATTTATTCCAACATCAAATCATTAAACCAACATCAATCAAGACACGTTACTGTCAAATGCGAACTGTGTGGCAGAATCTTCCAAGATCCAGTTCTTTTAGTCAAAcatcaaaacaaatataaagGAGAATGCAAAGACGGATTGAATTATTGTAAAACTTGTAATCAGTATTTTACAAACCGAAGTAGTTATTTATCTCATGAAAGAATTCAACATCAAGGAGTGAGATTTTTGTGTGAAACGTGTGGCAAAGAAGTTACGTCTCAAGTTAGTTTGAGAAATCATATGAGAACACATACTGGAGAGAAGCCTTTTGAGTGTCTTCATTGTAAGAAGAAGTTTAAGTCGACAGCTCAACTGAATATCCATGTACGGATTCATACTAATGAAAAACGATTCGAATGTAAAGAATGCGATAAGAAGTTTGTTCAAAGAAGTGCTCTAACAGTCCATATAAGATCGGTGCATACGAAGCAAAAACCaCTAAAATACAAATGTGGAGTTTGTGATGAACTTTTCGCAACTCTCAATCTTCTCGTCAACCATGGCTTCAACTCTCATACCAAATCGGATAAAAATCCAGTCAAAATAGGAAATATTTCAGTTGTTCATTCCTCTTCAAGAAGGTTTAAATGTAAAGAATGCAACGTTTCTTTCGCACAAAGCAGTTCATTTTATCaacacaataaaaaactgCATTTTGAACATTTCCACTGTTGTAATACTACTTTTTTGAACAAAGAAAGTTACGAAGAACACCAACGCACACATGTTTATTTCAAATGTGAATTTTGTAATAGCAGATATCGAAGTTCTGGCAGTTTAAGTCTACATCAAGCAGCTGTACATAAGCAGTTGGTAAAACATTGCAAAATTTGGAATAAAGATGGATGTCAACCGCCAACGAAGTGTAATGAAGTACATAACAAGAAAATTGATAACggaataaagaaaatatatttatgcgaaatttgtGGTAAAGAAGTTAAAAGTGCAACAAGTTTAAAAGATCATATTCGGACACATAGTGGAGAAAAATTCAAGGAATGTCCACACTGTGGTAAGAAGTTTGCGGCGAAATGTTCGCTAAGGCATCATAGATTGGTTCATAAAGGAGAAAAACCGCATCATTGTGAACAATGTGACAAgaaatttacacaaaaagCTGGTCTAATAAAACACATGAAATATGTGCATTATAAAGAAAAACCATACCAATGTCAAATTTGTTCCAAGAACTTTACAGCAAAAAGTGGTTTAAACAGACATATGAGAACACATACTGGAGAAAAACCTTTCGGTTGTCCACTCTGTGACAAGAAGTTTTCAGTGAAACCTCAATTGACGTCGCATTTGCTGATTCATAGTGAAGACAAACGATATGAACAAAAAAAGCTTCAATGCGGCATATGTAACGAAGTTTTCAATTGTCGTGATGAACTCCTCAGTCATGCATATACCGCTCATGCTGAAATCAAATCCGAAAGCATCGATTCCAGCGATCTTGAATGA
Protein Sequence: MHVEKRYSCTQCDKIFKTRHEMKTHELTHTSLRTHKCKECEADFRCVSALYRHRRKMHISDLKCEICGKIYSNIKSLNQHQSRHVTVKCELCGRIFQDPVLLVKHQNKYKGECKDGLNYCKTCNQYFTNRSSYLSHERIQHQGVRFLCETCGKEVTSQVSLRNHMRTHTGEKPFECLHCKKKFKSTAQLNIHVRIHTNEKRFECKECDKKFVQRSALTVHIRSVHTKQKPLKYKCGVCDELFATLNLLVNHGFNSHTKSDKNPVKIGNISVVHSSSRRFKCKECNVSFAQSSSFYQHNKKLHFEHFHCCNTTFLNKESYEEHQRTHVYFKCEFCNSRYRSSGSLSLHQAAVHKQLVKHCKIWNKDGCQPPTKCNEVHNKKIDNGIKKIYLCEICGKEVKSATSLKDHIRTHSGEKFKECPHCGKKFAAKCSLRHHRLVHKGEKPHHCEQCDKKFTQKAGLIKHMKYVHYKEKPYQCQICSKNFTAKSGLNRHMRTHTGEKPFGCPLCDKKFSVKPQLTSHLLIHSEDKRYEQKKLQCGICNEVFNCRDELLSHAYTAHAEIKSESIDSSDLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -