Lory007296.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Latheticus oryzae
Gene Symbol
-
Assembly
GCA_030157265.1
Location
CM058051.1:16320389-16323100[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3e-05 0.00098 19.4 1.7 1 23 139 161 139 161 0.98
2 16 0.00013 0.0094 16.3 7.7 2 23 168 189 168 189 0.97
3 16 3.3e-05 0.0024 18.2 2.3 1 23 196 218 196 218 0.98
4 16 0.00083 0.061 13.8 1.5 1 23 253 275 253 275 0.99
5 16 1.2e-05 0.00085 19.6 6.2 2 23 282 303 282 303 0.98
6 16 7.4e-05 0.0055 17.0 4.5 2 23 320 342 319 342 0.97
7 16 0.00034 0.025 15.0 6.0 1 23 400 422 400 422 0.96
8 16 0.0001 0.0073 16.6 1.6 1 23 428 451 428 451 0.93
9 16 1.2e-06 8.9e-05 22.7 0.8 1 23 456 478 456 478 0.98
10 16 1.2e-07 8.7e-06 25.9 1.5 2 23 489 510 488 510 0.97
11 16 5.6e-08 4.1e-06 26.9 1.4 1 23 517 539 517 539 0.97
12 16 1.8e-05 0.0013 19.0 1.6 3 23 551 571 549 571 0.92
13 16 0.00016 0.012 16.0 5.1 1 23 577 599 577 599 0.99
14 16 2.8e-05 0.002 18.4 2.2 1 23 605 627 605 627 0.98
15 16 4.5e-08 3.3e-06 27.2 0.2 1 23 633 655 633 655 0.99
16 16 7e-05 0.0051 17.1 0.1 1 23 661 685 661 685 0.93

Sequence Information

Coding Sequence
ATGATTAATAAAACAACGGAATTAGTATTGGATAAAATATGTCGTTCATGTATGTGCCAAGACGAGAATATGCGAAATGTGTTCGAGTCAAAAGAATTTGCTGGTCAAACGTTACAACTAGCCGAAATGTTAATGGATTGTGCTTCAATAGTCgTTAGTTCAGGAGACGGCCTTCCAACTCTTTTATGTTTATCTTGTGAAAACAAATTGAATGTAGCTTATGAGTTTAAACAGCAATGCCAAAAGTCTGATTCAACTTTACGTGaattaacaaatcaaaacGATTCTGTTATAAAAGAAGAAACGTGCGATATAGTTGTCCAACCTGATTTTAACATTCCTGGTTTATATAATGACTCAGATagtgatgatgatgatgatgatgatcaTGATGATGAGACAAAAAGTAAATCATTCTCTTGTCCTTTCTGTCAGAAAGTTTTAAGAACGAAAAAAGGTTTAAGAATTCATCAAAGACGACACACTGGGGATAAGTTGCGTTCGTGTCATATTTGTAACGCACAATTTACTAGAACTCATCATTTGATTAGACACATGAAGACGCATATGAAAAACGACACTGGACATGTGTGTACAGAGTGCGGAATGTCGTTTATGAAATTGAGCAATTTATTATCTcataaaaaaacacacaaaacTGAAGAGAAAACTGAAGGAGGAGAACAATCTGGAGATGATGGAAttgatgaatattttaaacCAAAAACGCGAACTACAAAAAAAGATAAAGGAACATATGAATgtaaatattgttttaaaataatgacGACGTTTGTTGGACTTAAAATTCACATGAGAAGACATACAGGCTCGGATTTAGCCAAATGCAAATTATGTGAGAAGAGTTTCACAAAAACGAGCCACTTGAAGCGTCATCTACAAACTCACGGAATTAAAGAGTTGGATAAACCCAAAcctgttgaaaaaaaagtgatgGAATGTGAATTTTGCGATcgcaaatttaaatataaaaaaagttttaatcaTCATATGCAGACTGAGCATGGGATGTCGGATGAAAGCGATGTTCCTTTAAGTGCTTACGTATcaaaaaccaaagaaaataCCGAAACTCAAGAAGaagagaaaatcaaagaacaaGAAGTTGAGTCAACACCAATAACCGAATCtactgaaataaaaactaattcgaATGAATcaaaaacgaataaaattcataattgCCACGTGTGTCATGCAGCATTCGCTCGCGCAAATCATTTAACTCGTCATATGACACTTCATCGTGCACTTTTAATCCATAAATGCGATCGATGCGACAAAGCTTTTGCTAGTTTAGAACATTTATCAAAACATGTGGAAGAAGATCATATAAATAAACCGTATGCATGTACGATTTGTAATAAACCGTTTAGTCGTGGCGAACATTTAATAAGACATTTAAAAGTGCATCAAACTGGAAATGAAAAAGAAGATAATTTGACTTGTTCAATTTGTGAGAAAACATTTAGTAGATCTGATCATTTAGCAAGacatattaaaattcatttattacaAGATAAAAGACATGTTTGTTCAGAATGTGGGAAAGCGTTCAATCGATTGGATAATTTGAAAACGCATCAAAGAATACATACAGGCATTAAGGATACGACAAAACTGCatttatgtatttattgtgGAAAGGAGTTTAATAATTCGAGCAATATGatTGTCCATATGAGACGACATACAGGAGAACGGCCATATAAATGTAGTCAATGTGGAAAAGGATTTCCAAGATCTCATGATTTAAAGTGTCATGAAAGAACACATTCGGGGGAGAAACCCTATCATTGCGCATTGTGCGGAAAAGCGTTCAACAAAAGCAATAAATTgctTCGTCATACTCGCGTCCATACAGGCGAGCGTCCCTACGTTTGCAACATCTGCGGTCGTGCTTTCACCCAATCCAACGATTTGGCTTTGCATATGAGACGTCACACCGGAGCTCGACCATATGCTTGTGGCATGTGTCCAGCTCGGTTTATCCAATCCGGACAATTAAAAGCTCATCGTCGTACAACCGGTCATTGGATGGAAACTCAACCGGATCTTAAAGGCGGTCATCGAGTCGAACCAGTCACACCAATCGTAGAACCAACACCAATCCGATTTAAAATTCATGGCAAAACGAAAAAAGAAGATGAAttgattgaagaaaataaaaatttgaaactattCAATAGTATGGGATTAATAAGCGCTGAAAATCTTGTTCTTGATCCGAAAATAGTCGAATTGCAAAATTCCggattaattaatttagttGGTGGAAGTGAGATTAAATTCAAAGATGGGTTTGTTGTTAAATCGGAAATTGGGAAAAGTCAAGATGCAGGGACATCGATTACACAAACGACGAGTTTTCAACAAGCTGTTGGAATTTCGTCTGTGACTTATTCGATTGTAGCGCCAGTAGCAAGTTCGACGACGTTTTCAGCTGCTGATTATagtaattatcaaaatttcggGTAG
Protein Sequence
MINKTTELVLDKICRSCMCQDENMRNVFESKEFAGQTLQLAEMLMDCASIVVSSGDGLPTLLCLSCENKLNVAYEFKQQCQKSDSTLRELTNQNDSVIKEETCDIVVQPDFNIPGLYNDSDSDDDDDDDHDDETKSKSFSCPFCQKVLRTKKGLRIHQRRHTGDKLRSCHICNAQFTRTHHLIRHMKTHMKNDTGHVCTECGMSFMKLSNLLSHKKTHKTEEKTEGGEQSGDDGIDEYFKPKTRTTKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGSDLAKCKLCEKSFTKTSHLKRHLQTHGIKELDKPKPVEKKVMECEFCDRKFKYKKSFNHHMQTEHGMSDESDVPLSAYVSKTKENTETQEEEKIKEQEVESTPITESTEIKTNSNESKTNKIHNCHVCHAAFARANHLTRHMTLHRALLIHKCDRCDKAFASLEHLSKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQTGNEKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCSECGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCALCGKAFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRTTGHWMETQPDLKGGHRVEPVTPIVEPTPIRFKIHGKTKKEDELIEENKNLKLFNSMGLISAENLVLDPKIVELQNSGLINLVGGSEIKFKDGFVVKSEIGKSQDAGTSITQTTSFQQAVGISSVTYSIVAPVASSTTFSAADYSNYQNFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-