Basic Information

Insect: Latheticus oryzae
Gene Symbol: ZIPIC
Assembly: GCA_030157265.1
Location: CM058048.1:345593-350641[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.024 1.8 9.1 1.2 2 22 3 23 3 25 0.87

2 26 4.3e-05 0.0032 17.8 1.1 1 23 30 52 30 52 0.96

3 26 1e-05 0.00076 19.7 0.6 1 23 58 80 58 80 0.97

4 26 4.9e-05 0.0036 17.6 6.2 1 23 122 144 122 145 0.96

5 26 0.0094 0.69 10.4 0.1 6 23 152 169 152 169 0.98

6 26 0.00012 0.009 16.4 1.8 3 23 174 195 173 195 0.96

7 26 0.028 2 9.0 3.6 2 23 205 227 204 227 0.97

8 26 1.8e-06 0.00013 22.2 0.6 1 23 232 254 232 254 0.98

9 26 0.046 3.4 8.3 4.4 2 20 270 288 269 292 0.93

10 26 0.00057 0.042 14.3 0.4 3 19 299 315 297 316 0.95

11 26 2.2e-05 0.0016 18.7 2.1 1 23 325 348 325 348 0.98

12 26 0.048 3.5 8.2 1.7 6 23 355 372 355 372 0.99

13 26 4.2e-05 0.0031 17.8 0.3 2 23 376 398 375 398 0.96

14 26 0.00062 0.046 14.1 0.4 2 23 408 430 408 430 0.96

15 26 4.7e-06 0.00035 20.8 0.4 1 23 435 457 435 457 0.96

16 26 7.1e-06 0.00052 20.3 1.5 3 23 465 485 463 485 0.98

17 26 5.2e-07 3.8e-05 23.8 0.9 1 23 491 514 491 514 0.98

18 26 2.3 1.7e+02 2.9 0.6 1 8 520 527 520 528 0.90

19 26 8.2e-05 0.006 16.9 0.6 2 23 532 554 532 554 0.96

20 26 0.082 6 7.5 0.9 2 23 581 603 580 603 0.96

21 26 0.035 2.5 8.7 0.7 6 23 610 627 610 627 0.99

22 26 0.017 1.3 9.6 2.4 2 23 631 653 630 653 0.95

23 26 0.011 0.79 10.2 2.2 3 23 664 685 662 685 0.95

24 26 0.81 59 4.3 1.9 3 23 694 713 693 713 0.90

25 26 6.1e-06 0.00045 20.5 1.6 1 23 719 741 719 741 0.96

26 26 0.00013 0.0096 16.3 0.4 1 21 747 767 747 768 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.024	1.8	9.1	1.2	2	22	3	23	3	25	0.87
2	26	4.3e-05	0.0032	17.8	1.1	1	23	30	52	30	52	0.96
3	26	1e-05	0.00076	19.7	0.6	1	23	58	80	58	80	0.97
4	26	4.9e-05	0.0036	17.6	6.2	1	23	122	144	122	145	0.96
5	26	0.0094	0.69	10.4	0.1	6	23	152	169	152	169	0.98
6	26	0.00012	0.009	16.4	1.8	3	23	174	195	173	195	0.96
7	26	0.028	2	9.0	3.6	2	23	205	227	204	227	0.97
8	26	1.8e-06	0.00013	22.2	0.6	1	23	232	254	232	254	0.98
9	26	0.046	3.4	8.3	4.4	2	20	270	288	269	292	0.93
10	26	0.00057	0.042	14.3	0.4	3	19	299	315	297	316	0.95
11	26	2.2e-05	0.0016	18.7	2.1	1	23	325	348	325	348	0.98
12	26	0.048	3.5	8.2	1.7	6	23	355	372	355	372	0.99
13	26	4.2e-05	0.0031	17.8	0.3	2	23	376	398	375	398	0.96
14	26	0.00062	0.046	14.1	0.4	2	23	408	430	408	430	0.96
15	26	4.7e-06	0.00035	20.8	0.4	1	23	435	457	435	457	0.96
16	26	7.1e-06	0.00052	20.3	1.5	3	23	465	485	463	485	0.98
17	26	5.2e-07	3.8e-05	23.8	0.9	1	23	491	514	491	514	0.98
18	26	2.3	1.7e+02	2.9	0.6	1	8	520	527	520	528	0.90
19	26	8.2e-05	0.006	16.9	0.6	2	23	532	554	532	554	0.96
20	26	0.082	6	7.5	0.9	2	23	581	603	580	603	0.96
21	26	0.035	2.5	8.7	0.7	6	23	610	627	610	627	0.99
22	26	0.017	1.3	9.6	2.4	2	23	631	653	630	653	0.95
23	26	0.011	0.79	10.2	2.2	3	23	664	685	662	685	0.95
24	26	0.81	59	4.3	1.9	3	23	694	713	693	713	0.90
25	26	6.1e-06	0.00045	20.5	1.6	1	23	719	741	719	741	0.96
26	26	0.00013	0.0096	16.3	0.4	1	21	747	767	747	768	0.96

Sequence Information

Coding Sequence: ATGAATTATTGCGAAATTTGCAAACGTCAATTCAAATATAGAGAGCAATATTTACAACACGACAGAATTAAACATAAAGGATTTAGATATTTATGCGAACTTTGTGGTAAAGAAGTTACATCAAAACATAGTTTAGGAAATCATATGAGATCACATAGTGGAGAGAAACCTTTTGCTTGTCCACAATGTGACAGAAAATTTGTGTCAAAAAGTGTGTTGAGAGCTCATTCAAAGActcataaaaatgaaaaaccacATCGATTTGGAACGAATTATGTTTTCAACGAACTTATCAGCGATGTCGGAATAAAATCCGAGCTTGATGAAAGCTGCACTTTTAACAATCTTTCCactttggaaatttataaatgtgAATCATGCAAAGTTAGTTTTCGTAGCTCCAGTTCATACCAGCGCCATCGCCGAAAACACCATTCAACAATTCCAAGATGTTGtggtaaaatttttgacaacaaTCAAGACTACGAAAAGCATCAATTAGAACACCAATCTGTTGACTGTGACTTGTGTGGCAAAACTTTTCATACTTCTTATGCGTTACGAATGCATCGATCGAAAGCTCATAAAGTCACAAACTcagaattaacaaaatattgCAAGATTTGCGATATTCATTACAAATTTCGACGCGCTTATTTATCCCATCTTAAAACCAAACATGAAAAAGTCCGATTTGTGTGTGAGATTTGTGGTAAAACAGTTACAACAGAGAAAAGTTTACGAGATCATAAAAGGACACACAGTGGAGAAAAACCGTTTGATTGTGTTCATTGCAAGAAGAAgaaCCAGTGTGGAATatgtaagaaaatttttgattctcgCCAAAAGCTCCGCAGCCATCATCTTTGCACCCATGCTGAAAAGACATTAGCTTGCGATCAATGTCCTAAATCGTTCAAATCTCGCCGAGAACTGAAACTCCATTCAGTTTGTCACTCGTCAATACCAACATATAAATGCAAAGAATGCGACGCGTCTTTTCGTTTCTACGGTTTGTTATATCGCCATCGTCGGAAAATCCACATTGCTGATTTGCAATGTTGTGGTAAATTTTTCTCTAGCGAACGATTTTACAACAAACATCGACTAAGACACGTTTCTGTCAAATGTGAATTCTgtagtaaaatttttgctaattGGATTTCCTTAAGTAAACATCAAAGACTTGTACATAAGGAAGGATATCAACAACCGACTAATTATTGCAAGATTTGTGATCGCAGTTATAAAGTTAGACAAGCTTATTTGAGACATGAAAGAGTGGAACATCGAGGAATCAAgtttttatgtgaaatttgTGGCAAAGAAGTTACGTCGCAGACGAGTTTGAGAGATCATTTGAGAACACATACTGGAGAGAAACCTTTTGGTTGTTCTTATTGTGAGAAAAAGTTTAAGTCGAAGAGACAATTGGAGACACATGTTCGAGTTCATACGAAAGAAAAGCCGTTTGAGTGTAAAGAGTGTAAGAAGACATTTACACAAGGGAGTACTTTGACAGTTCATATAAGATCGGTGCATACAAAGGAACGACCTTTCGAGTGTCCAATTTGTCCGAAGAAaCAAAAGGAGAAATGCGAAAAATGCGGTTACGTTTTTGATAATGTGAAGCAACTCCAGACACATCTTACTCGTGCTCATCCAAAGAAAGAGTTGAATTGCGATTTATCAATTCAAGCATTCGCTGTTGCTTCTGAATTTAAACCACAAGctttacaaaaatgtaaagactGCAACGCTTCATTCCTATACGACAATTCACTGATTTACCATCGCAGAAAAGTCCACATTAAAGATTTACAATGTTGTGGTAAATTTTTCGGCAACTTGAAAGAGTTagacaaacataaaaaaagacACGAATCTGTTGAATGTGAATTTTGTCACAGCACTTTTCCTCATTATGTTTCTTTAAGACTGCATCAAATTAAAATGCATAAAGATGAGTACAAACCACCACCAAAGTGTTGCAAAATTTGCAACTCTAATTTCTCGACTCGAAAAGATTATTGGGAACACGTTGAAACAGTACATAAAGGAACTACTCTTTCTGTTTTATGTGAGATTTGTGGGAATAAAATGGAGCAGAGTTGTTTCCAGATTCATATGAGGACACATACTGGAGAGAAACCttttaattgttcaatttGTGATAAGAAGTTTAGATCGAAGATACAGTTGAAATCGCATCTAGTGAGTCATACGAAGGAAAAACCGTTTGAATGTAAACAGTGCGAGAAGAAGTTTGGTTATAAAAGTGCTTTATCAACACATATTAAAGCGATTGATGATATTTGTATAATCGAAAAATGGGGAAACATTGATCACAACATTGTAAAACTTCAGTGTGGAATTTTGCAAGATGACGATGAAGTGATCTCAAGTATTTGA
Protein Sequence: MNYCEICKRQFKYREQYLQHDRIKHKGFRYLCELCGKEVTSKHSLGNHMRSHSGEKPFACPQCDRKFVSKSVLRAHSKTHKNEKPHRFGTNYVFNELISDVGIKSELDESCTFNNLSTLEIYKCESCKVSFRSSSSYQRHRRKHHSTIPRCCGKIFDNNQDYEKHQLEHQSVDCDLCGKTFHTSYALRMHRSKAHKVTNSELTKYCKICDIHYKFRRAYLSHLKTKHEKVRFVCEICGKTVTTEKSLRDHKRTHSGEKPFDCVHCKKKNQCGICKKIFDSRQKLRSHHLCTHAEKTLACDQCPKSFKSRRELKLHSVCHSSIPTYKCKECDASFRFYGLLYRHRRKIHIADLQCCGKFFSSERFYNKHRLRHVSVKCEFCSKIFANWISLSKHQRLVHKEGYQQPTNYCKICDRSYKVRQAYLRHERVEHRGIKFLCEICGKEVTSQTSLRDHLRTHTGEKPFGCSYCEKKFKSKRQLETHVRVHTKEKPFECKECKKTFTQGSTLTVHIRSVHTKERPFECPICPKKQKEKCEKCGYVFDNVKQLQTHLTRAHPKKELNCDLSIQAFAVASEFKPQALQKCKDCNASFLYDNSLIYHRRKVHIKDLQCCGKFFGNLKELDKHKKRHESVECEFCHSTFPHYVSLRLHQIKMHKDEYKPPPKCCKICNSNFSTRKDYWEHVETVHKGTTLSVLCEICGNKMEQSCFQIHMRTHTGEKPFNCSICDKKFRSKIQLKSHLVSHTKEKPFECKQCEKKFGYKSALSTHIKAIDDICIIEKWGNIDHNIVKLQCGILQDDDEVISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -