Lory004845.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- ZNF236
- Assembly
- GCA_030157265.1
- Location
- CM058050.1:11131240-11137885[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00033 0.024 15.0 2.4 1 23 106 128 106 129 0.95 2 24 0.0003 0.022 15.2 0.3 1 23 134 156 134 156 0.98 3 24 0.0023 0.17 12.4 1.4 2 21 162 181 162 183 0.94 4 24 0.00027 0.02 15.3 0.2 1 23 189 211 189 211 0.98 5 24 0.01 0.74 10.3 1.2 2 23 223 244 222 244 0.95 6 24 3.8e-05 0.0028 18.0 1.4 1 23 268 290 268 290 0.97 7 24 6.5e-06 0.00047 20.4 2.6 1 23 296 318 296 318 0.98 8 24 0.00031 0.022 15.1 0.5 1 23 324 347 324 347 0.96 9 24 0.0027 0.2 12.1 6.1 1 23 357 380 357 380 0.97 10 24 6.6e-07 4.8e-05 23.5 0.9 1 23 464 486 464 486 0.98 11 24 9e-06 0.00066 19.9 1.1 1 23 492 514 492 514 0.98 12 24 0.00032 0.023 15.1 1.1 3 23 525 545 524 545 0.98 13 24 1.4e-05 0.0011 19.3 0.8 1 23 602 624 602 624 0.97 14 24 0.012 0.86 10.1 5.1 1 23 630 652 630 652 0.98 15 24 0.00041 0.03 14.7 3.2 3 20 660 677 658 680 0.94 16 24 0.00023 0.017 15.5 2.3 1 23 686 708 686 708 0.98 17 24 0.0064 0.47 11.0 3.5 1 23 898 921 898 921 0.94 18 24 1.1e-06 7.9e-05 22.8 3.1 1 23 932 954 932 954 0.97 19 24 8.2e-06 0.0006 20.1 2.0 1 23 960 982 960 982 0.98 20 24 6.3e-05 0.0046 17.3 0.9 1 23 990 1012 990 1012 0.97 21 24 0.22 16 6.2 6.7 1 23 1018 1041 1018 1041 0.95 22 24 0.00048 0.035 14.5 2.2 2 23 1170 1191 1169 1191 0.96 23 24 0.33 24 5.6 2.2 1 23 1197 1219 1197 1219 0.88 24 24 0.019 1.4 9.5 0.8 1 22 1225 1246 1225 1246 0.96
Sequence Information
- Coding Sequence
- atgtctgaagaaaattgtaaaattgataatattcCAACATTTATTGCTTTACCATTGGAAAGTATACAAAACACTTCTTTCCAAAAACCAgaacaatttcaaataattaaaaatgctATAATCAAAACACTGTCTGATGGGACTGTTTGTATTATTGATGCCCATGAAgTTAGTGGTAACGGTAATGAACAAATTCAAGCAAATTTTCTTCCACAAACTGAAACTTGTGCACTAGAAAGCAACACTTTACAATCTCCTCAAGTGATAATCGAAAATAATGATACCCAGATTGAAATTCAAAAGCCAAAACCAACGTTCAAGTGCCCTAAatgtaaagaaatttttgataaagcaGCACTTTACAAGAAACATATGATCTTCCatcataatgtaaaaaaatacaaatgtgATAAATGTTCCCAAGGGTATAATgttgaaacaaatttgaaaattcatatgGCTATTCATGCTGATAGTAAACCTACTTGTCCTATTTGCAACATTACATTTCAAAGACTTGCAAGTCTCAAATCTCATCTTATGTGTcatcaaattgaagaatcgTATAATTGCGATGAATGCACAGCTGAGTTTGAAAAAGAAGAGGAGCTTAATAAGCATTTACAAACGCATATAAATAACACAGTGTTTGAAGCTAATGATTTGGTTTGTTCGTATTGCAATGTTCAGTTTGAAGATAGAAAAACTTATAAAGAACATATAGCACATCATATTAAGGTTAAAAAAATGGTACTATCTGgaaaaaaatctcgaaaaacaAATAGTAATAAAAGTTATCCTCATGTGTGTACAGTCTGTTTAAAAAGTTTTCCAAAGTTTTCTCTTCTTGAAAGGCATCTAAGAGTTCATAGCGGTGAAAGACCTTTTGTTTGTCAGCATTGTAACAAAGGATTCAACCAAAAAGGAACTCTTCaaatacatttaaataaaCACACTGGAATTAAACCTTTCCAATGTGCTTTGTGTTCAgcaaaattcaatcaaaaagGCAATCTACGGGTTCATGTTGAGAAAACTCACACAGCACCTATGCCTGGAGTGAAAATGTACAAATGTCCGCATTGtacttgtatttttaaaagaatagCTTCTTTAAATGTCCACATTACAAAATGTCATGCTCAGTCAGAAGACATGGAATGGAAAAATGTAATGACTCAATTGAAAGAATTAGAACTTCATAGTGTTTCTTCATCTGGTACAGAAACAATCGAAGGAGAAGTTACTGAAGAAAATAGAAGATTGTTGAAtgagttgaaaaaatcttcAGATGGGCGTTTAACTTATGTGAGATTAGTGGAATCGTTTCTTGATGGCACAATTCGAAGATATTTAGTTATGCAGAAGAAAATTAATGATGTGAAATGGTACATTTGTAGCTATTGCAGTAAAGAATTTAAGAAACCATCGGATTTGATCAGACACACAAGAGTGCATACAAGGGAAAGACCATTTGTTTGTAAACAATGTGGTGCCTCTTTTGCTTTAAAATCAACTCTCTTCTACCATATGAAAACTCATATAAGCAACACTCATTTCAGCTATGCTGCGTGTGCTTAttgttctaaaaaatttacgtCAGTAAGGTCTCTCAACATCCATTTAAAaaaacaTACGGATCAAGCTCATCATCGTTCATCTGATCCTTCACAAAAACCTCAGGAGGCAGAGGTGTCAAATAATCAAAGTCTTGCAGATATAGAAATAGAAATGAAACAACCTCTTCTTCGAACTTCAGATGGATTACATCCATTAGCATCtactgaaaataattcaaagaaatttcaGTGTGCCAATTGTAATGCACGatttagtaaaatttcaaatttaaaaagacATATGATATTACACACTGGCGAAAGAAGATATAAATGCGATCAGTGTTTTAAAGCCTACTTTACGTCTCATGGTTTGAAAGAACATTTGCTTCATCATTCAGGTGTTAGAAATTTTGGATGCAAAGTTTGTGGGAAAAGATTTATGACTTCGTCGTTATTGAAAAGACATACATTGTGTCATAGTACAAATAAACCCTATGTTTGTCCTTATTGTAATAAGAATTTCAAGAGTGTTGCTTTATGCCGAAAACATATGAATATTCATAGAAAGGAAATTCATTCACAAGACTCTGAAGTTAGTGTCATTCCTAATAATTCTGAACAGTCAATTTATGACTTAACACCTCATTCTATCCAAATTATCACCAATTCAAATAAAGATGCCACAGTAGCACCcaatcaaattcaaacaatttttatcaattgtgATGATTTACAATTATCTGATAATTTGTATACTCAAAATCCTGAGAATATTATGATCAGTACTTTGACAGACATACCAGAGAACAATACTTTCAATCTTGATAATTTAGAAGTTTACAATTCTAGtcaaataatatcaaataatttcacagagttgaataataaattattaaaatctaGCAATGATGATGATACGATCAAAAGTAAAATCAATGAAACACCTCTTACAAATAATATTCCAGAATTGAATCTGCTTTTCAATTTAGATACAGAATTGGAAAGCGGCAATTGTGatatatcaaatgaaaatttaaatttagctgacattaatttaaatgaagTCTCGGCATTTAACGAACAAGAAAACACGGATAAAGAAGAagttgctgaaaaagtgacaaaacaattttcatgTAATAAATGTAACAAAATGTTTGTggcaaaaaattcttatttgaaGCATCTTCATCAAGAACATAAAGATTCGAAGAAGTCGGAAAATAATGCACATCCGTGTACTTACtgtagtaaaatattcaaaaagcGCTCAGATTTGgtGCGGCACATTCGTACTCATACAGGTGAAAAGCCTTTCGCATGTGAAAAATGCGAAAAACGATTCACTCTGAAATCAACTCTATTATCACACCAAAGAACTCACAATCCAGTCACACAAAAGCAGTTTAATTGTGTTGTTTGTAATTCGTTTTTTTCGAGTAAATCTAGTTTGAAAGTTCATATGTCAGTTCATACCGgtgataaaatttatgaatgtaatttttgttcaatGAAATTTCGGACATCAGCACATCGAAAATCGCACGAAAATAATTGTCATACTAATCCTTCGAAAAAAAGAACGAAGAATAAAGTCACCAATTTATTATCTGCAGTTGCTATGGATGTTGCAAAACAAGATCAGAATATAATCACTGAAGAAGTCGTACCAACGAGTGGTCTACAAAATGTTCTTGTAGTCCAAGATCAGATTCAGTTAGACCCAGTGAACTTTTTAACTGAAACACCTCACAATCCTCTCACTGATTCTCCTCAATTAGATCCGATAATAATGCAACAGTTACCCTCGAATTTTCTACTGCAAGATAATTTATTGCCTTCTTCCTTAATACATTTGGATGATACCACTCTGCTGAATGTTAAAACTGTTAATTCAGTCGAACAAGATCAGAACAAAGTTAGTAATGATAAAGAACGCAATTTGGAATGTGATATTTGTCATAAGAAGTATGCATCAAAAGATGTTTTAAGAAAgcacaaaaaattacatgGAGTAGATAAGAAGTTTAAATGTTCAAGATGTGAGAAAAGATTTGATACAGAagacattttgaaatttcatgaAAAAACTCATGATGGATTTAGACCTTATTCTTGTTTATATTGTGCTAATAGTTTTGTTAAAGAACATAGTTTAGCAACACATATGAAAAGGTATTTATCAGACTTGTTCTAA
- Protein Sequence
- MSEENCKIDNIPTFIALPLESIQNTSFQKPEQFQIIKNAIIKTLSDGTVCIIDAHEVSGNGNEQIQANFLPQTETCALESNTLQSPQVIIENNDTQIEIQKPKPTFKCPKCKEIFDKAALYKKHMIFHHNVKKYKCDKCSQGYNVETNLKIHMAIHADSKPTCPICNITFQRLASLKSHLMCHQIEESYNCDECTAEFEKEEELNKHLQTHINNTVFEANDLVCSYCNVQFEDRKTYKEHIAHHIKVKKMVLSGKKSRKTNSNKSYPHVCTVCLKSFPKFSLLERHLRVHSGERPFVCQHCNKGFNQKGTLQIHLNKHTGIKPFQCALCSAKFNQKGNLRVHVEKTHTAPMPGVKMYKCPHCTCIFKRIASLNVHITKCHAQSEDMEWKNVMTQLKELELHSVSSSGTETIEGEVTEENRRLLNELKKSSDGRLTYVRLVESFLDGTIRRYLVMQKKINDVKWYICSYCSKEFKKPSDLIRHTRVHTRERPFVCKQCGASFALKSTLFYHMKTHISNTHFSYAACAYCSKKFTSVRSLNIHLKKHTDQAHHRSSDPSQKPQEAEVSNNQSLADIEIEMKQPLLRTSDGLHPLASTENNSKKFQCANCNARFSKISNLKRHMILHTGERRYKCDQCFKAYFTSHGLKEHLLHHSGVRNFGCKVCGKRFMTSSLLKRHTLCHSTNKPYVCPYCNKNFKSVALCRKHMNIHRKEIHSQDSEVSVIPNNSEQSIYDLTPHSIQIITNSNKDATVAPNQIQTIFINCDDLQLSDNLYTQNPENIMISTLTDIPENNTFNLDNLEVYNSSQIISNNFTELNNKLLKSSNDDDTIKSKINETPLTNNIPELNLLFNLDTELESGNCDISNENLNLADINLNEVSAFNEQENTDKEEVAEKVTKQFSCNKCNKMFVAKNSYLKHLHQEHKDSKKSENNAHPCTYCSKIFKKRSDLVRHIRTHTGEKPFACEKCEKRFTLKSTLLSHQRTHNPVTQKQFNCVVCNSFFSSKSSLKVHMSVHTGDKIYECNFCSMKFRTSAHRKSHENNCHTNPSKKRTKNKVTNLLSAVAMDVAKQDQNIITEEVVPTSGLQNVLVVQDQIQLDPVNFLTETPHNPLTDSPQLDPIIMQQLPSNFLLQDNLLPSSLIHLDDTTLLNVKTVNSVEQDQNKVSNDKERNLECDICHKKYASKDVLRKHKKLHGVDKKFKCSRCEKRFDTEDILKFHEKTHDGFRPYSCLYCANSFVKEHSLATHMKRYLSDLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -