Lory000048.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:253342-256768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 4.5e-06 0.00033 20.9 0.9 1 23 18 40 18 40 0.98 2 23 0.29 21 5.8 0.3 1 10 46 55 46 58 0.91 3 23 0.00012 0.0087 16.4 0.2 2 23 61 82 60 82 0.95 4 23 0.00053 0.039 14.4 0.1 2 23 121 142 120 142 0.95 5 23 2e-05 0.0015 18.8 7.5 1 23 241 263 241 263 0.97 6 23 0.021 1.5 9.4 4.5 1 21 269 289 269 291 0.93 7 23 1.6e-06 0.00011 22.3 4.1 1 23 296 318 296 318 0.99 8 23 0.0075 0.55 10.7 0.4 3 23 326 347 325 347 0.95 9 23 0.01 0.75 10.3 0.1 2 23 353 374 352 374 0.96 10 23 0.00013 0.0097 16.3 0.8 1 23 384 406 384 406 0.97 11 23 0.00048 0.035 14.5 0.9 1 23 412 434 412 434 0.96 12 23 2e-07 1.4e-05 25.2 0.7 1 23 440 462 440 462 0.98 13 23 1.2e-06 8.8e-05 22.7 3.4 1 23 468 490 468 490 0.98 14 23 4e-05 0.0029 17.9 3.4 5 23 499 517 496 517 0.95 15 23 0.08 5.8 7.5 0.1 3 23 585 605 583 605 0.94 16 23 1.9 1.4e+02 3.2 3.8 1 23 611 633 611 633 0.97 17 23 0.0022 0.16 12.4 1.9 1 23 639 661 639 661 0.91 18 23 7e-05 0.0051 17.1 3.6 1 23 667 690 667 690 0.98 19 23 0.00017 0.013 15.9 3.2 1 23 702 725 702 725 0.95 20 23 0.0049 0.36 11.3 3.0 3 23 736 756 735 756 0.98 21 23 5.1e-07 3.7e-05 23.9 1.7 3 23 764 784 762 784 0.98 22 23 1.9e-06 0.00014 22.1 0.7 1 23 790 812 790 812 0.98 23 23 0.0083 0.61 10.6 0.1 1 22 818 839 818 839 0.95
Sequence Information
- Coding Sequence
- ATGAATCGAGTCTTGACCAACCATTTACGAATCCACACAAAAGAAAAACCTTACACTTGTGACTATTGTCCATTGAAGTTTTCCCAAAAAGGTGGTTTAACAATCCATCGTCGTTATCACACTGGCGAACGCCCTTACAAATGTCCAAATTGTCCAAAAGCTTATGTAGCCAAAACTATTCCTTGCAATCTCTGTCCAAAGACTTTTTCAACTGAAAGTCAATATTACGAACACAAGATTATCCATGTTCGTGAAAGGAATGAGTCGAATCAGTATTATATACCAAAAGTTATACCATCAACTGCTACAACCAAAGACAAGATTGATCAAACCAATCAAATGAAACCAATTTGTAAAATTCCATGTAATCTATGTCCGGAAACGTTTTCAAGTGAAAGTCAATATTACACACATAAAATTATACATGTTAAAGAGAAGAATTGGAGTGCTGCTTTATTACGATTAGaaaattctgataaaaataaattgtttgcACTGTATGAAGATCATCTAATGTCAAGTCTTCAATGCAAATACTTGATGAATATTGTAAATTCCGAGCAATTGAACGAATCCGACAGTGATCTTTTAAATCTCCTCTCAAGTGATTGCTCCGATTTACTCAACAATATAACAACAAACGAACAATTCGAACGATTGATTAACAGCAGTTCGATTGATGAAATCCTCGACGATATAAAGAAACAACCACCTCAAATGTTCAAATGTTATCACTGCaacaaaacattcaaaactaaaaaacttcTCAAAAAACACTTATTTATACATACAGGCAGTCGCAACTTTTCTTGTGacatttgttcaaaaaaattcaaatatcgATACGAAGTTGAAGTTCATAAGAAGTGTCATAACAATCCAACTTTTCAATGCGACATTTGCTCAAAAATGTTTATATATAAATCTCATCTAACAATCCATCGGCGTAaacatttaaatgaatttgtCGAATTTTGCAGTGAATGTAATTTAGGTTTTGTCACAAAATTCTTATACACAAACCATGTTAATTTAGTCcataaaaaacttcaattaatTTGTGAAACTTGCGGTGTTCAATTGAGTTCGGTTTCGAGTCTTCGCGAACATAAACTAACCCATGATCCTAATTATGGTAAAGAACGATCACACATTTGTGAAATTTGCGGCAAGTCGTATTTAAATCTACGCAATTTGCGCGGACACATGAAAATCCATCAACAAATCCGGAGTCATATTTGTAACATTTGCGGAAAATCTGTTAGTAGTAAGAAAATTCTTGAAACTCATGTTAAAATGCATACTGGATTGAAAGACTTTATTTGTCACATTTGTAATAAAGCTTTCGCGTCGAAAGAATATCTACAAATTCATATAAGAATCCATACTGGAGATAAACCATTTGTTTGTGATATTTGTGGTAAGAAATTTACACAAAAGACTTCGTTAACAGTTCATAAAAGACATCATACAGGTCAGAAGCCATACAAATGTGAATGCGGTAAAGAATTTACAACGAAAAGTCATTTAATGAGTCATTATAAAACGCACGATTTGGGTGGGGTTGATATTAATttgtTTCTGTCTTCACTCTTAGACAAATTAATTTATGGTCCGGCAATATCCATAACACCAATTCGGAACAAATTTAAGAAACGTAAACGTAGAGAAGAGTTAATAGTAGTTCCAGAGATTTCATCACTATCTGAACATCTTCCTGATAATGATCCAAAGCAGACCGATGCTGTGCATTGCGAATTATGCGATGAAAGTTATCCCAATAATATAGCTTTTGCGCTTCATTCTTTAGTCCACAATGACGACAATAAATATTCTTGTCATTTTTGCGAATATCGCAACGCTTCGAAATACCACATTGAAATGCATATTAAAGCTCATGAAGGTACTACTAAATACAAATgtgaaatttgtaataaagCTTTCACAGTAAGCACACACGCTATTGAACATAAGTACTTCCATACTGGCGAAAAGCCATTTCAGTGTGAAATTTGCGGCAaacattttatgttttcttGGTTTTTAACATCGCATCGACGTACCCAACATTGGGAAATAATGACTGGTACACCTCTAGTCAAATACGATTGTAATATTTGCAATAAACATTACACATCTTCGACTGGATTGCGCAGACATAATATGAGTAAACACAACGAAGGTGGAATCAATTCATCTGTTTTATGTGATATTTGTGGTAAATGTTTATCGAGTAaagagaaattaaaatttcatagaagAATCCATACGGGATATAAACCTTTCGGATGTGATATTTGCGGCAAATGTTTTTCACGAAAAGAACAATTGAAAGAACATGAACGAGTACATACCGGGGAAAAAccatttatttgtaatttctgTGGGAAGGGATTTACGCAAAGATCGCCATTGAGGATACATGAAAGGACACATACAGGGGAAAGACCGTACATTTGTCGAATTTGCGGAAAAGGGTATATATCCAAAGGAGTTATGGATACACATATGAAGACTTGTGCTGCTGTACCTTTATATTAA
- Protein Sequence
- MNRVLTNHLRIHTKEKPYTCDYCPLKFSQKGGLTIHRRYHTGERPYKCPNCPKAYVAKTIPCNLCPKTFSTESQYYEHKIIHVRERNESNQYYIPKVIPSTATTKDKIDQTNQMKPICKIPCNLCPETFSSESQYYTHKIIHVKEKNWSAALLRLENSDKNKLFALYEDHLMSSLQCKYLMNIVNSEQLNESDSDLLNLLSSDCSDLLNNITTNEQFERLINSSSIDEILDDIKKQPPQMFKCYHCNKTFKTKKLLKKHLFIHTGSRNFSCDICSKKFKYRYEVEVHKKCHNNPTFQCDICSKMFIYKSHLTIHRRKHLNEFVEFCSECNLGFVTKFLYTNHVNLVHKKLQLICETCGVQLSSVSSLREHKLTHDPNYGKERSHICEICGKSYLNLRNLRGHMKIHQQIRSHICNICGKSVSSKKILETHVKMHTGLKDFICHICNKAFASKEYLQIHIRIHTGDKPFVCDICGKKFTQKTSLTVHKRHHTGQKPYKCECGKEFTTKSHLMSHYKTHDLGGVDINLFLSSLLDKLIYGPAISITPIRNKFKKRKRREELIVVPEISSLSEHLPDNDPKQTDAVHCELCDESYPNNIAFALHSLVHNDDNKYSCHFCEYRNASKYHIEMHIKAHEGTTKYKCEICNKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCNICNKHYTSSTGLRRHNMSKHNEGGINSSVLCDICGKCLSSKEKLKFHRRIHTGYKPFGCDICGKCFSRKEQLKEHERVHTGEKPFICNFCGKGFTQRSPLRIHERTHTGERPYICRICGKGYISKGVMDTHMKTCAAVPLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -