Lory000062.2
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:310178-313351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.3 96 3.7 1.0 9 23 2 17 1 17 0.94 2 26 0.0021 0.16 12.5 0.8 6 23 24 41 24 41 0.99 3 26 7.9e-06 0.00058 20.1 0.9 2 23 45 67 44 67 0.96 4 26 0.0011 0.079 13.4 2.2 2 23 77 99 77 99 0.95 5 26 5.3e-06 0.00039 20.7 0.5 1 23 104 126 104 126 0.96 6 26 1.4e-06 0.0001 22.5 2.0 1 23 132 154 132 154 0.99 7 26 4.9e-08 3.6e-06 27.1 1.2 1 23 160 183 160 183 0.97 8 26 0.012 0.89 10.1 5.3 1 23 201 224 201 224 0.95 9 26 6.6e-05 0.0048 17.2 0.9 1 23 229 251 229 251 0.95 10 26 0.0045 0.33 11.5 3.4 1 23 257 280 257 280 0.98 11 26 0.0013 0.098 13.1 0.2 6 23 287 304 287 304 0.99 12 26 0.04 2.9 8.5 0.2 2 20 308 326 307 328 0.92 13 26 0.043 3.2 8.4 0.6 2 16 339 353 339 361 0.86 14 26 5.2e-06 0.00038 20.7 0.2 1 23 366 388 366 388 0.96 15 26 5.9e-06 0.00043 20.5 2.5 1 23 394 416 394 416 0.97 16 26 0.0029 0.21 12.1 1.9 1 23 425 448 425 448 0.92 17 26 0.049 3.6 8.2 6.6 1 23 476 499 476 499 0.94 18 26 2.5e-05 0.0018 18.6 2.0 1 23 504 526 504 526 0.97 19 26 0.0028 0.21 12.1 6.4 1 23 532 555 532 555 0.97 20 26 0.11 8.2 7.1 3.8 2 23 560 581 559 581 0.97 21 26 0.022 1.6 9.2 0.1 3 23 586 607 584 607 0.91 22 26 0.0044 0.32 11.5 0.3 3 23 618 639 617 639 0.95 23 26 2.3e-05 0.0017 18.6 0.1 2 23 645 666 644 666 0.95 24 26 3.1e-05 0.0022 18.3 5.3 1 23 672 694 672 694 0.97 25 26 0.0014 0.1 13.0 0.2 1 23 700 723 700 723 0.95 26 26 0.00041 0.03 14.7 3.9 1 23 729 751 729 751 0.98
Sequence Information
- Coding Sequence
- ATGTCTTTTAAATATTACACTTCACTTTATcgtcatttaaaaaaaaatcacactgAAGAATTGCAATGTTGTGGTGAAACATTTAACAACAAACaagattacaaaaaacatcaaactaAACACGCTCCTGGTAAATGCGAATTGTGTGGAAAACGTTTTCGGAATTTAGTTTCTTTGAAACAACATCAAACCAAAATTCATAGAGATGGATATCAAGAACCAACAAATTATTGCGAGATTTGCGATTGTGTTTTTAAGAATAGAAGTGGATATTTGCAGCATGAGAAGAAACagcataaaaatattagattTTTGTGTCAAACTTGTGGGAAAGCTGTATCGTCTCAAACTAGTTTGAGGGATCATATTCGGACGCATACTGGAGAAAAGCCTTATGAATGTACACATTGTGAGAAGAAGTTTGTGTCGAGGAATCAATTGACAGCGCATGTGAGAATTCATACTAAAGAGAAACCGTTTGAGTGTAAAGAGTGCGATAAGAAATTTACACAGAAAAGTTCGTTAACAGTGCATGTGAGATCCGTGCATACGAAGCAAAAGCCGTTTGAATGTCCAATTTGTTTAAGGAAACAAAAGAAGCACAAATGTTCAAAATGTGAGAAACTCTTCGATACTCTCAATCAGCTTCGCAGCCATCGCTATAAATTCCAtcttgaaagaaaatttatttgcaaTCAATGTCCCAAATCATTCAAAACTCGTCTTACTCTTCAAGTTCATTCTGTTACTCATTCCCAATTAAAATCCTTCAAATGTCAAGATTGCAATGCTGCTTTTCAAAGCTCTTATTCATTACAATGCCATCGTCGAAGAATCCATATTAAAGACTTACAATGTTGTGGTAAAAGTTTCCCTGACCAAAAACGTTACGAAAAGCATCAACTGACACACGTTTCTGTTAAATGCGAATTCTGTGGccgcatttttcaaaattggatTATTCTAAAAAGACATCATTTACTTTACAATGGGGAATGCAAGAATGCGAGGAATTATTGCAAgatttgtgataaattttttgcaacAAGAGGTAGTTACTTATTCCATGATAGAAGAGTTCATCAAGGAGTTAGATATTTATGTGAAACGTGTGGCAAAGAGTTAACTACACAAGTTGGTTTAGAAAATCATATGAGAACTCATACTGGAGAGAAACCATTTGCTTGTCCACATTGTAGCAAAAAATTTTCGGCGAAGACTCAATTAAGAACGCATATTTTAACTCATACGGACGAAAAACCaagAAAGAAGCACAAATGTGGAATATGCAATGAACTTTTTGAATCTCGAAATCATCTCATCAGACATGGTTATAGCGTTCATGTCGAAACAAAACTCGATCCCGAAGATATCGAAAGTGAGAGTCACAAATGCAAAACTTCCCGCAAACTCAAAAGTCAGAAGCACGAATGCAGCAGATGCCATGAACTTTTTGACACTCGCAGTAAACTCTGCAGACATCGTATTAATATCCATCGCGAAAAAACATTCATTTGCGATCAATGCACTAAATCTTTCAAGACAAACCGCGAACTTAAACTCCATTCTCTTACTCATTCGTCGCTGAATACATATCATTGTCAAAAATGCGATGCTTCTTTTCGGAATGGTACAGCATTACGTCACCATCACAGAAAAGTTCATGTAGCTGATTTGAAATGTGAAATTTGTTGTCAAACTTTTGCCAATCAAAAAAGTTACGACAAACATAAACAGAGTCACGTTGCTGTTGAATGTGAACCTTGTGCTAAAATGTTTCAGAACTCTTATGCGTTGCTTCGACATCAATTACTAATACATAAAGAGGGATATCAAGCGCCAAAGAAATTTTGCGAGATTTGTAATCGTGATTTTGCTAATAGAAACAGTTATTTAATTCATGAGAGACAAGTTCATAAAGAAAGAAGATTTTTGTGTGAAGCTTGTGGTAAAGAGTTAACAACTTCTGCAAATTTGGAAATTCATATAAGAACACATACTGGAGAGAAGAATTTTAATTGTCCACATTGTGAAAAGAAGTTTTCGTCAAAGTGTTCTTTGGAATTGCATCTTCGACTTCATACGaaagaaagtttgtttaaatgtGATGAATGTGACAAAGAATATTTGAAGAGGGGTTCCTTAAAAGAGCACATTCAAGCAGTTCATGAGAAACTTAAACCTTATGAATGCCACATTTGTTTGCAGAAATTCTCAAGAAAAAATACTTTGAATGGACATAAGAAAATGCATTTTCGAAGAGGAGATCatttaatctaa
- Protein Sequence
- MSFKYYTSLYRHLKKNHTEELQCCGETFNNKQDYKKHQTKHAPGKCELCGKRFRNLVSLKQHQTKIHRDGYQEPTNYCEICDCVFKNRSGYLQHEKKQHKNIRFLCQTCGKAVSSQTSLRDHIRTHTGEKPYECTHCEKKFVSRNQLTAHVRIHTKEKPFECKECDKKFTQKSSLTVHVRSVHTKQKPFECPICLRKQKKHKCSKCEKLFDTLNQLRSHRYKFHLERKFICNQCPKSFKTRLTLQVHSVTHSQLKSFKCQDCNAAFQSSYSLQCHRRRIHIKDLQCCGKSFPDQKRYEKHQLTHVSVKCEFCGRIFQNWIILKRHHLLYNGECKNARNYCKICDKFFATRGSYLFHDRRVHQGVRYLCETCGKELTTQVGLENHMRTHTGEKPFACPHCSKKFSAKTQLRTHILTHTDEKPRKKHKCGICNELFESRNHLIRHGYSVHVETKLDPEDIESESHKCKTSRKLKSQKHECSRCHELFDTRSKLCRHRINIHREKTFICDQCTKSFKTNRELKLHSLTHSSLNTYHCQKCDASFRNGTALRHHHRKVHVADLKCEICCQTFANQKSYDKHKQSHVAVECEPCAKMFQNSYALLRHQLLIHKEGYQAPKKFCEICNRDFANRNSYLIHERQVHKERRFLCEACGKELTTSANLEIHIRTHTGEKNFNCPHCEKKFSSKCSLELHLRLHTKESLFKCDECDKEYLKRGSLKEHIQAVHEKLKPYECHICLQKFSRKNTLNGHKKMHFRRGDHLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -