Lory000070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Latheticus oryzae
Gene Symbol
-
Assembly
GCA_030157265.1
Location
CM058048.1:363456-374310[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.00075 0.055 13.9 1.7 1 23 43 65 43 65 0.95
2 40 0.0067 0.49 10.9 3.3 1 23 71 94 71 94 0.98
3 40 0.79 58 4.4 0.2 6 23 101 118 101 118 0.97
4 40 0.00092 0.068 13.6 0.1 2 23 122 144 121 144 0.96
5 40 4.5e-06 0.00033 20.9 0.9 2 23 153 175 152 175 0.96
6 40 4e-08 2.9e-06 27.3 1.3 1 23 180 202 180 202 0.98
7 40 0.00043 0.032 14.6 0.4 3 23 210 230 208 230 0.97
8 40 6.6e-06 0.00048 20.4 2.9 1 23 236 259 236 259 0.96
9 40 0.00018 0.013 15.9 1.8 1 23 287 309 287 309 0.98
10 40 0.00023 0.017 15.5 1.7 3 23 314 335 313 335 0.97
11 40 0.0016 0.12 12.8 2.8 2 23 345 367 344 367 0.95
12 40 3.8e-05 0.0028 18.0 0.9 1 23 372 394 372 394 0.98
13 40 1.6e-05 0.0011 19.2 5.2 1 23 400 422 400 422 0.98
14 40 0.18 13 6.4 6.1 1 23 431 454 431 454 0.93
15 40 0.0024 0.17 12.3 0.8 1 23 459 481 459 481 0.93
16 40 0.001 0.075 13.5 4.9 1 23 487 510 487 510 0.98
17 40 0.22 16 6.2 2.0 6 23 517 534 517 535 0.94
18 40 8.7e-05 0.0064 16.8 1.2 2 23 538 560 537 560 0.96
19 40 0.0035 0.25 11.8 2.8 1 23 569 592 569 592 0.96
20 40 7e-05 0.0051 17.1 2.6 1 23 597 619 597 619 0.95
21 40 0.00017 0.012 15.9 2.3 1 23 625 647 625 647 0.98
22 40 1e-06 7.7e-05 22.9 1.3 1 23 653 676 653 676 0.97
23 40 1.4e-05 0.001 19.4 1.8 1 23 682 704 682 704 0.98
24 40 0.0088 0.64 10.5 3.8 1 23 730 753 730 753 0.92
25 40 0.44 32 5.2 0.2 6 23 760 777 760 777 0.98
26 40 0.00029 0.021 15.2 0.6 2 23 781 803 780 803 0.94
27 40 0.00024 0.018 15.5 1.1 2 23 813 835 812 835 0.96
28 40 6.8e-08 5e-06 26.6 0.6 1 23 840 862 840 862 0.98
29 40 3.4e-06 0.00025 21.2 0.9 1 23 868 890 868 890 0.97
30 40 1.3e-05 0.00097 19.4 1.7 1 23 895 918 895 918 0.95
31 40 0.28 21 5.8 3.3 1 23 924 947 924 947 0.95
32 40 9.7e-05 0.0071 16.7 0.1 2 23 953 974 952 974 0.96
33 40 0.043 3.2 8.4 6.1 2 23 981 1003 980 1003 0.96
34 40 0.028 2.1 8.9 1.2 6 23 1010 1027 1010 1027 0.98
35 40 0.0014 0.1 13.1 2.4 2 23 1031 1053 1030 1053 0.96
36 40 0.012 0.86 10.1 0.4 2 23 1063 1085 1062 1085 0.95
37 40 2.3e-06 0.00017 21.8 0.7 1 23 1092 1114 1092 1114 0.96
38 40 2.7e-05 0.002 18.4 1.2 1 23 1120 1142 1120 1142 0.95
39 40 2.9e-06 0.00021 21.5 1.0 3 23 1150 1171 1148 1171 0.97
40 40 4.1e-07 3e-05 24.2 0.5 1 23 1177 1199 1177 1199 0.98

Sequence Information

Coding Sequence
ATGACTCAAAGATACAGAGAAACTAGTGATCACAATCGAAGACCTGGTCAAGGCACAAATCGATCAACAACTCTAGCTCAAGATCGTTTTCAACGGATTTCTGTCTTAAGACAACGGCAGAAGACTTTCACTTGTAGTCAATGTTCTAAATCATTCAACACTCTCCTTGGACTCCGGCGTCATTCTGATTCCCATTTCTCACAAACAACTTTTCAATGTGAAGACTGTAattcttttttccaaaacttgaaattattACATTCCCATCGTCGATCAATCCATACTAAAGATTTAAATTGTTGTGGTAGAATTTTTCTCAGTAAAGAAAGCTACGAAAAGCATCAATTGAATCACTTTTCAGTTGAATGCAAAATTTGCTACCAGATGTTTCCAAATTCTAACGCTTTACGTGGACATCAAATTACAGTCCATCAGATTGTTTCGAAACTGACGACTTACTGCGAAATTTGCGATCGTAGTTTTAGTGATAGAAGTAATTATATAACTCATGAGAAAACACAACATAAAGGAATCAGATTTTCATGCAAGATTTGTGGAAAGAAAGTTACAAGAGCGAGTAGCTTACGAAATCATATGAGAACACATAGTGGAGAGAAACCTTTTGGTTGTGAACAATGTGATAAAAAGTTTGGGACTAGCAATAAGTTGAGAGAACATTTAGCAGTTCATAAGGATGATAGACCATATCAGTGTGAAAAATGTGGCTGTGGGTTTAAACGGAATCCTACTTTGAAGAGGCACATTAGATTTGTACATGGGCAAAAGCAactAAACCACGAGTGGGGAATCTGTGATGAAACATTCAACTCTGAAACTTCCAGTTATTCgttagaaaattacaaatgtaAAAACTGTAATCTTTCGTTTGTCAACAAACAAGGCTATGAAAAACACACTATGGAACACGTCCCTGTTGATTGCAAAATTTGTAACAAACGCTTCCTAAGCTCTGATTCTTTACGTCGACATCAACAAGTGAAACACAACGATGGGAATCCGGatcgaaaaaaatattgcgAAATTTGCGATCGCCATTTCAAGTATAGATACACTTATCTGAAACACGAGAAAGTAGAACATGACGGACTCAGATTTTCGTGTGATATTTGTGATCGAAAACTAAAATCGAGACGTAGTTTAGTAGGACATATGAGAACACATAGTGGAGAAAAACCTTTTACTTGTCCAGAGTGTCACAAGAAATTTGCACAAAAGTCGCGATTGTGTACTCATGTGCGAATTCACACTAACGAAAAACCgAAAAAAAGATACAAGTGTTCAAAATGTGATCTAATCTTCGATACTATCAATGAATTCTGCAAACATCGCTACCATAATCATCTCGAGAAGAAATTCAACTGCAAAGATTGCATCAAATCTTTCAAAACAGAACAATCACTCAAAGCTCATTCTGTTATTCATACTTCTGCCAATCCCTACGAATGTGAAAAATGTTCTATTTCATTCAAATACACTAAATCACTCCATCGTCATCTTAATAAATTCCAcactgaaaatttacaatgcTGTAATGAAACTTTCTCTAATCTACGTTCATACAACAATCATCAATATCAACATCATCGTGTTAAATGTGAAATCTGCAATAAAACATTCCCCTCTCTGACGTTTTTAAAACAACATCAAACCAAATTACATAAAGTTGGGTATGAAGCTGTATCATTCTACTGCAAAATTTGTGAACGCAATTATAAAGACAAATTTAGTTATATGaatcatgaaaaaattaaacatggAAGAAGTCGATTTCTGTGTGATACTTGcggaaaaaatttcaagaaacaaAGTTGTTTAGATCTTCATATTAGGATACATACTGGAGAGAAGCCGTTTAGTTGTTCTCATTGTGAAAAAAAGTTTGCTTCGAAGAATGTGTTGAAAGGACATTTACGAGTCCATACGAAAGAAAAACCGTTTGAATGTAAACAATGTGGGAAGAGGTTTACACAAAAGACTTCTTTGACAATTCATGGAAGATCAGTGCATACAAAAGAACGACCTTATGAATGTCATATTTGTCCGAAGAAGTTTGTGACGAAGACTCTTCTAGgcgatcatttaaaaaaacactctAAAATGAAGCATCTCGAATCAAAATCTGACAAACTTAACAATCCTTTTACTGTTCATTCTTCGGTAGAAAAATTCGAATGTAAAGAATGCAGTGCTTTTTTTCCCACCTCCAGTTTATTACAAAaccattgtaaaaaattccacTCTAAAGAGTTACAATGTTGTGGTAGGATTTTCCTCAACAAAGACGGTTACGAAAAACATCAACTCAGACACATCTCTGTTGAATGTGAATtctgttacaaaaaattccGAAACTCTGATTATTTACAATTGCATCGAGCAAGTGTCCATAATGTGGAAACTCCAAAACTGACGAAATATTGCAAGATTTGCGATCGAAGTTTCAGCGATCGAAGTGTTTATTTAACTCATGAAAGAGTGAAACATAGTGGAGTCAGATTTGTgtgtgaaatttgtaaaaaaaaattcacaagaGCGAGTGGATTGCGAGATCATATGAGGATACATACAGGAGAGAAACCTTTTGCTTGTTCTGACTGTGAGAAAAAGTTTGTTTCGAAATCTCAACTGAGAATACATGAACGGAATCATCAACAAGAACGTTTCGAATGTGAAgaatgtgacaaaaaatttacgtttaagttttatttaacaaaGCATGTGAAAGCTGTTCATGGAAAaacaaaaaagcacaaatgtagaagatgttttcaactttttgattCTCCAAACCAACTCCGCATCCATCGTTATCGTGTTCACATcgaaaaaactttaatttgcGATTATTGTCCTAAATTATTTGCGCTTCCTTCCGAACTTGAACGCCATCTAACTACACATTCAACACTCCCAACACTTAAATGTAAAGATTGTGATGCTTTTTTCCGATGTCACGCTACTTTAAAACGCCATCGGCGAAAAATCCACGTACAAGATTTACAATGCTGTGGTAAAACTTTCGATAATCGAAAAAGTTACGACAAACATCAATTTAGACATGTTGCTGTTAAATGTGAATTATGTAatcgaattttcaaaaatttccactcTTTAGGAAGACATCAATCTAAAGTCCATGTGGATGGATACAAGCCACGAACAACATATTGCCAGATTTGCGATCGGCAATTTGTTAATGGCAGCAGTTATTTATTACACGAGAAAAGagttcataaaaaaatcaaaaaatcttatttgtGTGAAACTTGCGGTAAAGAACTTAAAACGCAAGatagtttgaaaaatcatATTCGGACGCATACTGGAGAAAAACCGCATGATTGTCCATATTGTGAAAAGAAATTTGTTTCTTCGACTCAATTGAAAATGCATGTTTTGATTCATACGAAAGAAAAACCTTTTGGATGTAAAGAATGTGATAGGAAATTTACACAAAAGACTTCTCTAACAATACACATTAGATCAGTACATGAAAAAAAGCGACCATTTGAATGTCCAATTTGTCCAAAGAAATTTGTTACCAAGAGTCTCTTGAGCGAACATTTGAAGAAACATTCGGAGAAAGGACTAtaa
Protein Sequence
MTQRYRETSDHNRRPGQGTNRSTTLAQDRFQRISVLRQRQKTFTCSQCSKSFNTLLGLRRHSDSHFSQTTFQCEDCNSFFQNLKLLHSHRRSIHTKDLNCCGRIFLSKESYEKHQLNHFSVECKICYQMFPNSNALRGHQITVHQIVSKLTTYCEICDRSFSDRSNYITHEKTQHKGIRFSCKICGKKVTRASSLRNHMRTHSGEKPFGCEQCDKKFGTSNKLREHLAVHKDDRPYQCEKCGCGFKRNPTLKRHIRFVHGQKQLNHEWGICDETFNSETSSYSLENYKCKNCNLSFVNKQGYEKHTMEHVPVDCKICNKRFLSSDSLRRHQQVKHNDGNPDRKKYCEICDRHFKYRYTYLKHEKVEHDGLRFSCDICDRKLKSRRSLVGHMRTHSGEKPFTCPECHKKFAQKSRLCTHVRIHTNEKPKKRYKCSKCDLIFDTINEFCKHRYHNHLEKKFNCKDCIKSFKTEQSLKAHSVIHTSANPYECEKCSISFKYTKSLHRHLNKFHTENLQCCNETFSNLRSYNNHQYQHHRVKCEICNKTFPSLTFLKQHQTKLHKVGYEAVSFYCKICERNYKDKFSYMNHEKIKHGRSRFLCDTCGKNFKKQSCLDLHIRIHTGEKPFSCSHCEKKFASKNVLKGHLRVHTKEKPFECKQCGKRFTQKTSLTIHGRSVHTKERPYECHICPKKFVTKTLLGDHLKKHSKMKHLESKSDKLNNPFTVHSSVEKFECKECSAFFPTSSLLQNHCKKFHSKELQCCGRIFLNKDGYEKHQLRHISVECEFCYKKFRNSDYLQLHRASVHNVETPKLTKYCKICDRSFSDRSVYLTHERVKHSGVRFVCEICKKKFTRASGLRDHMRIHTGEKPFACSDCEKKFVSKSQLRIHERNHQQERFECEECDKKFTFKFYLTKHVKAVHGKTKKHKCRRCFQLFDSPNQLRIHRYRVHIEKTLICDYCPKLFALPSELERHLTTHSTLPTLKCKDCDAFFRCHATLKRHRRKIHVQDLQCCGKTFDNRKSYDKHQFRHVAVKCELCNRIFKNFHSLGRHQSKVHVDGYKPRTTYCQICDRQFVNGSSYLLHEKRVHKKIKKSYLCETCGKELKTQDSLKNHIRTHTGEKPHDCPYCEKKFVSSTQLKMHVLIHTKEKPFGCKECDRKFTQKTSLTIHIRSVHEKKRPFECPICPKKFVTKSLLSEHLKKHSEKGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-