Lory007404.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- -
- Assembly
- GCA_030157265.1
- Location
- CM058052.1:5067285-5068070[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-12 4.1e-09 36.0 0.1 1 40 9 47 9 52 0.91
Sequence Information
- Coding Sequence
- atggataAAAAACGAGCCTCTTGGACTGAAAACCAATTAAAGCAGGCATTGGAAGCAATTGCTAATGGAATGTCTGTCCTTGCAGCATCCAAACTCTATGAAATTCCTCGTAGAACGCTAAGAAACCATATCTCTACTGGAAGCAACAAACGAAGACTAGGTCGTAAAAGACTTTTAACTAAAGACCAAGAAAACGAATTATGTAAACGAATTTTCCGTTTAGCAGAAGTTGGAATGCCTCTGACGAGTAAATGTCTAAGAAGAAGTGTCTTTACTTTTGTTGAACAAAATGGTATGCAGCAtccattttctcaaaatacaaaattggCGGGCAGAAAATGGATGAGTGCGTTTTATAAAAGGAATCCAGACGTAGCTCAACGAAAAGCACAATCTCTAAATCCAGCGAGAGcgcaaaaagtaaataaatttgttgtggaggattattttcaaaagttaaaaaacgtTTTAATAGACTTAAGGCTAATAAATCAACCACAACTAATTTACAATATGGACGAGAAAGGATGCCGCCTTAACCTTCACCACCAGCAGCAAGTCCTTGCTAAAAAGGGGACGAAAAGGGTTCACCTTATTGCCCCAGAACATGCTGAAAATGTTACAGTAGTAGCGTGTGGAAATGCAGTTGGGCAGTCTATCCCTCCCATGGTactatttaaaagaaaacgCCAGAAGCCTGAATGGATTGATACCATGCCGCCGGGTACGTCAGTAGAAATGACTGCTAAAGGTAGCATGACTACATCCACTTTTATTGATATTTGA
- Protein Sequence
- MDKKRASWTENQLKQALEAIANGMSVLAASKLYEIPRRTLRNHISTGSNKRRLGRKRLLTKDQENELCKRIFRLAEVGMPLTSKCLRRSVFTFVEQNGMQHPFSQNTKLAGRKWMSAFYKRNPDVAQRKAQSLNPARAQKVNKFVVEDYFQKLKNVLIDLRLINQPQLIYNMDEKGCRLNLHHQQQVLAKKGTKRVHLIAPEHAENVTVVACGNAVGQSIPPMVLFKRKRQKPEWIDTMPPGTSVEMTAKGSMTTSTFIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00870490;
- 90% Identity
- iTF_00870489; iTF_00870490;
- 80% Identity
- -