Lfle000133.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989979.1:2113250-2124966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00048 0.033 15.1 1.6 1 23 300 325 300 325 0.94 2 12 0.0078 0.54 11.2 1.8 2 23 338 360 337 360 0.94 3 12 0.51 35 5.5 0.7 2 21 399 418 398 419 0.91 4 12 0.00023 0.016 16.1 0.1 2 23 700 721 699 721 0.97 5 12 0.083 5.8 8.0 3.5 1 23 742 763 742 763 0.96 6 12 0.37 26 6.0 0.8 5 23 813 831 810 831 0.92 7 12 0.00028 0.02 15.8 3.9 2 23 847 868 846 868 0.97 8 12 1.3e-06 9.2e-05 23.1 3.4 1 23 874 896 874 896 0.99 9 12 3.3e-05 0.0023 18.7 0.7 1 23 901 923 901 923 0.99 10 12 7.7e-06 0.00054 20.7 0.2 2 23 930 951 929 951 0.97 11 12 2.6 1.8e+02 3.3 0.4 1 20 957 976 957 976 0.89 12 12 0.0072 0.5 11.4 2.5 3 23 989 1010 988 1010 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAATCATCACGGAAAAGGTCGAGAAAATCAAAGATTGTGCTTCGTGAATGCGTCGTTAGTGATGAAGAAAATGATACGTTTAAGCAGGAGTATCCACATAATAAACAACAGAAGATACTACCCAAAACAAATCATATACAAAAAATTAAAAACAAATTTGACACTGAACGAAACAACCCTACCAAGAAACCTACACAAACCAACGATGAACAGACGAAAAACAATGATAAAAATGAAACAAAATCACCAATAAAGTTTTCTGTAACCGTTGCTATAGAGAAATTTGATGAGGACAGCAACGATTTGGTTATAGATGAAACAAATTATGAAACACCGCTTATTCTTGCTGAATCATCTTCAAACTACAATCCAGACATTGAAGTATGCAATGTTCACACTGATTGGCCAACAGGAGAAGGATGTGTGTTAAAACGGGATGATATAATAGAAGCAGCAAATAAAATCATGGAAGAATCGACAAACAGTGCTGATCAAATGCTTGCTATTGCAACGAAGAACTGTCTCGGACATTTTCCAAGGGGTTATCTTAACCGTTTTGAAACCAAGATACATAAATCATTGTTAAAATGGATGTATTGGCAGAATACTAACGGTAAACATAAAAGCACCCCTCTGTATTATAAGTGCTATATATGTGCTGAAGCGTGGTGGTATTTGTATGAATTTCGTGAACATTTGAAGAGTAAACATGATCAGTTCAAATTGGAATTGGAAAAGAATAGCACACATGAAGCAAATATTGTAGCATTTTTAGGAAATTCTTTTAAAATAAAAGACTTTGATCCTAAAGGGAATTGCCCAAAATGTGATTATGACGCTGCATTTCACCGTCTAGAAAACCGATCGAAGGATAATAAATCATTATTATATTTTATATGCAAAATATCCAATTGTGGTAAATCATTTCCAACCTGTTATGCGTTAAAATCACACGAATACACAGACCATATAACAGTGGAATCCAGCGCAGTCAAATGGAGGAAAACGTGTGAAGTATGCAGTGTACCGTTCCATACACATTCAAATTATGAAGCACATATGAGCTTGATGCACAATGCACGGTCTGATACCGTTGTGGCAATAGCATATAAGAAGTGTCATTTATGTAAATGCCGCTATTTGTACAATCACATGCTACACACATGCATAATGAAAGGGCTAAGTTTAAAATGCAGTAATTGTTTTAGAATGTTTCCGAAGGGTTATTTATTTAAATTACATGTGAACAGAATGGATAATTATACGTGTAAAATATGTAATACACTTCTGCCTAAACGATGTATGGAAGTAGAGCATCTTTTGACTCATACTGACAAGTTTGCCATTGTGAAAAAATGTATATTATGCAAGGAGTTTAAAGTTTTTTTGACGGATGAAACCGCCTTAGAACATGGACAGCAGATACATAAGAGTAATTTAAGCTATTTTGATGCGATTCTAATACCGAAGATTTGTCTTCAAACGGATACTAACCCAAACATTTCTGAACAAGCCGATGAAGTTTCTTTATTAAATATTAAAGCTGAACCGCAAGATTCAATCGACAGTTCTACTTGCATATATCCCGAAGTTCATATAAAGCAAGAAATAACGGATTCTGAATACACAGGTGACAGTGAAAACGGTGTGCAAGTGAAGCAAGAAACAGATAACGATATGCAAGAAGAATACAACATTAAAATTGAAGAGCAAGAATACTACAATATATATGATGAAGTAGGAGAATCTAAAGAAATTATGGTAAAGCAAGAAATGCAAGAAGATGATTTTGAAGATATTATTCAATTGGATTTCAACTATATAGATACGCAAGATACAGTTCAAGATGACATACAAGAACCTATTAAAAGAATCATCTGTAAAAAAAATAAGGGGCCCAAAATTTATAACTGTGACAACTGTGGTTTCGGTGGTGTACTCAAACAATATCGTGAACATATAAAAAATAATTGCATGAATTCCACAGAAACAATATGCTGTGCAAATTATGCATGCACAAAATGTTGTACAAATTTTAAAACAATCAAACAATATATCTTGCATTTTACTGAACACGGATTCGAACCGCTGACCTGTCCGGTCTGTTACAAGACATTTAGCACAGTCTCATTAATCATTTCTCATATCAATGTACATATTAGAATGAGATTTCTGTCGGTACAGTTTTTAAATTGTAATAATGATACCCGTTGGGCTCATAAATGCAAGATTTGCTTAAAAGAATTTAGCAATATAAATTTTTTCAAGCATTGGGAATCGCATTTGTCTTTGAAAGAAGAACCTCCGATTGATGTAGACGTCTGTACCACAGATGATAAGAACTTGACCGTAGATCAGGATGCAATTAGTAAACTTGTTGATTGTCTGCTATCCCCCGAGTATGGCAAGAAAACAATCCCCGCCTGTATTATATGCAACAAAAATTTCCAACGACGCAACGATTCAAAAAGGCATATGATTGAACACTTGCTAACTGACGCCTACCAAAGAAAACCTAAATACAGTTCGTTAAAATGTCAAATTTGTTCTAAATGTTATATAAAATCATACGATTATAAACAACACATGAGAGATCACGCGAATTTGCCTGTATATAAGTGTCAAATGTGCAAGAAGAGTTTCAGCGATTCAAGTAATTTTGCTAAACATAAAAAAGTTCATAACATTCACGCGTATACTTGTGATATTTGCGGGAAGAAATTCAATGCCAAGTTTTCTATTGAGAAACATATACAGATGCATGAACACCAGAAGCCAATACCGTGTCCTCAATGCGACAAGATATTCACAATACCTTCAATGTACAAAAAACATATAAAAACTCACACAAACAAAGCACAGTTCACTTGTATAGACTGCGGACAAAAATTTGATAGTTTGAAAAAGAAATGGGATCATATGTGGGAAGTACACAAGGAGAGGAAATACCTAGCCGACTGTGCTCTCTGCCCTCAGAAGTTCAGAAAATTTCGAGATTTGAACCATCATTTGAGAATAAAACACAACACAATGTTAGAAGTCAAACCTTTAAGGGGGCAGGATCAGGGCACAACATTGGACGATATATTTAAAATGCGTACTTTATCTGTCAGTTTAGTTGATCAAAAGGAAACTTTAGTCGTATTTGAATAA
- Protein Sequence
- MSESSRKRSRKSKIVLRECVVSDEENDTFKQEYPHNKQQKILPKTNHIQKIKNKFDTERNNPTKKPTQTNDEQTKNNDKNETKSPIKFSVTVAIEKFDEDSNDLVIDETNYETPLILAESSSNYNPDIEVCNVHTDWPTGEGCVLKRDDIIEAANKIMEESTNSADQMLAIATKNCLGHFPRGYLNRFETKIHKSLLKWMYWQNTNGKHKSTPLYYKCYICAEAWWYLYEFREHLKSKHDQFKLELEKNSTHEANIVAFLGNSFKIKDFDPKGNCPKCDYDAAFHRLENRSKDNKSLLYFICKISNCGKSFPTCYALKSHEYTDHITVESSAVKWRKTCEVCSVPFHTHSNYEAHMSLMHNARSDTVVAIAYKKCHLCKCRYLYNHMLHTCIMKGLSLKCSNCFRMFPKGYLFKLHVNRMDNYTCKICNTLLPKRCMEVEHLLTHTDKFAIVKKCILCKEFKVFLTDETALEHGQQIHKSNLSYFDAILIPKICLQTDTNPNISEQADEVSLLNIKAEPQDSIDSSTCIYPEVHIKQEITDSEYTGDSENGVQVKQETDNDMQEEYNIKIEEQEYYNIYDEVGESKEIMVKQEMQEDDFEDIIQLDFNYIDTQDTVQDDIQEPIKRIICKKNKGPKIYNCDNCGFGGVLKQYREHIKNNCMNSTETICCANYACTKCCTNFKTIKQYILHFTEHGFEPLTCPVCYKTFSTVSLIISHINVHIRMRFLSVQFLNCNNDTRWAHKCKICLKEFSNINFFKHWESHLSLKEEPPIDVDVCTTDDKNLTVDQDAISKLVDCLLSPEYGKKTIPACIICNKNFQRRNDSKRHMIEHLLTDAYQRKPKYSSLKCQICSKCYIKSYDYKQHMRDHANLPVYKCQMCKKSFSDSSNFAKHKKVHNIHAYTCDICGKKFNAKFSIEKHIQMHEHQKPIPCPQCDKIFTIPSMYKKHIKTHTNKAQFTCIDCGQKFDSLKKKWDHMWEVHKERKYLADCALCPQKFRKFRDLNHHLRIKHNTMLEVKPLRGQDQGTTLDDIFKMRTLSVSLVDQKETLVVFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -