Lfle000299.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989979.1:4670895-4687130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0065 0.45 11.5 1.0 1 23 322 344 322 344 0.98 2 12 0.15 10 7.2 0.3 1 23 515 537 515 537 0.98 3 12 0.017 1.2 10.2 7.9 1 23 544 566 544 567 0.93 4 12 0.16 11 7.2 3.1 1 23 571 593 571 593 0.97 5 12 1.5 1e+02 4.1 4.3 1 23 598 621 598 621 0.94 6 12 0.0042 0.29 12.1 0.2 1 23 625 648 625 648 0.94 7 12 1.3 88 4.3 0.3 2 21 661 680 661 685 0.90 8 12 1.8 1.2e+02 3.8 0.4 2 23 740 762 739 762 0.94 9 12 0.013 0.89 10.6 0.6 2 20 778 796 777 799 0.91 10 12 7.3e-05 0.005 17.6 1.6 1 23 805 827 805 827 0.99 11 12 5.3e-05 0.0037 18.1 4.5 1 23 834 856 834 856 0.97 12 12 0.0001 0.0071 17.2 1.5 1 23 862 885 862 885 0.95
Sequence Information
- Coding Sequence
- ATGCGATGTTGCGTACCCAATTGTAAAAATGACTCGCGACAAATTTCCAAGTCCCAGGGAATTACTTTTCACGTATTCCCCACCGAGCGCTCACTTCGTTTTGCTTGGATCAGAGCCCTCGGTAAAGAAGACTGGGTGCCAAAAAAGCGCAGTGCTGTGTGCTCAGAGCACTTTCTTTGTGAGGACCTGTACGAGACCAGCAGTGGTCTGCGAAAGGTTAAAGCCGGGGCTGTTCCGATGGTGTTACTGGTCTGCAGAATCTGTTTGGTAATGGACACCAAATTGTTTTCAATAAGAATGAATAAGTTAGAACAAGCATATGAACATTTGACCGGGATATCGGTGCAAGAAGAAGAGAGATTACCACAGAAGTTATGTGTCGAGTGTGCACAGAGACTGTTTAATTTCAGCCGCTTTAGGAATAAAAGTCTCAAGGCTAACTCCCTTATGGTGGACATTCTGAAGCAAAGAGACTATATAACACTAGAGCACATAAAAAGTATTAACCGCGAGAACAACCAATTAATATCTCCATTAACAATAAAGAATTTAGAATCAGTATGTTATGATAATCATGAGCCCACAATATTACCGGAAGAACCAGAAACAGTAAACATAGACTTAAAACAGGAAAACGAAATATTTTTAACGGAAGAAGTCATAGATAAAGAGGACAGTAGTGATAATTATGATTTGGTGATCCAATCGGATAATTATTCATCAGACGATTGTCTGCCATTAGAGGAATGTAAAACCGTAAAAGAGAAGAAAGAAAGAAGAGTTGAAAAATCAGTCAAAAGAGCGAAAAAAAATGAAAATCCAGATAATATTATTAGACGTATGACATCGTTGCTGAATGATGGTTGGAATGAAAATGTAGCCACTAGAACAGATTCAACTGTAGATGCTGACAACGTTGATATTTTGAAGAGAGTATCAAGTTGTAAATATACAAACGCATTGTATAAATGCACGACGTGTTTTACAGGATTTTACGAGGAAGACGCATATAATACGCATATGGCTAGACATAATAATATGACAATACAAAATATAAAAAATATAATCCGCGAGAACAGACTACTGATATCTCCATTAACAATAAATAATACACAACCAGAACAAAATGATCATTGCTATATACAAGAAAAACCCGCCATATTAACAGAACCAACAGCAATAGACATCGACATAAAACAGGAAAACGAAAATTCTTCGGAAGAAGTTATAGACAAAATGGCTGAAGATAACAATGGTGATTATGAAGATTTTGTTATCCAATCAGATAATTTTTCATCAGACGACAGCCTGCCATTAGAAAAGTGTAAAACCGTAAAAAAGAAAAAGAAACAATTGAAAATATCTATGAAAAGAGCGAAAAAAATTGCAAAACCGGTTGAGCCTAAAATCGATAGGCGTAGGAAACCGTTATTGAACGATGATTTGAATGAAATGCTATTCACTATAACCGATTTGACACTAGAGGAACAGCTGGCTGAGATATTGAAAAGACAAGAAAGTTCTAACTATAAGAATGCAGTTTATAAATGCACGGCGTGTTTTAAAGGGTTTTTAGATGAAGACGCATATAATTCGCATATTGCTAGGCATACGAATGAAGCAGGCGAACACCCATGCGCGGTATGCAAGACCCACTTCAAACACCCCCACGCACTTCGCAAGCATATAACAGCGCACCACACGCAGAGGTTCAGTTGTAAACAGTGTAACTACGTCACTACACACCGGCAGACCGCCAGGTTACATGAGAGATGGCATAATGGGACGAAGTACAGCTGTCCACATTGTAACCACGAGTTCCTTAAATTCACTACGTACATGGGACATATAAGGATAAAGCACCCTTCAGACTTTGTGTGTGAGCTATGCGGCTATTCCTTCGTTAGTGCTAAGGGTATAGAACTACACAAGAAGTTGAAACATAGGCTGGATAATACACAGGTCCCGGAAGATGGTCCATACTGCGAGCTTTGTAACGTAAGATTCGTGTCAGCGGAGGCTCATAAAAAACATATTAGTGTATCTGCGAGACATAATACAGGTTCTGACAAAAACCGCGAAGCGAACAAACCTACAAGAAAGGTTAGAAAGACAAAAGAGGAAAAGGAGACAGAGAGGAGATCTCGGGAGTTACACAAGGAAGATGATAAGAAGAGACCATATCCCAGTCAGATAAGGAAAGCAGAAGGTCCCATACCTTGTGAACAGTGTGGTCTTCAACTAGAAGACTCCCGGGCATACCACGGACACTTCAGACGTATGCATCCGGACAAGAATCGAACCAACTACCCGTCTATGAAGTCGCCGTGTATGTGTGAGGTGTGCGGCAGGATGTTCCAGAGCTACGCCCTCCTGAAGGACCACACGTGGGTGCACACTGGCGAGCGTCCGTTCAAGTGCGACAGTTGCGACAAGTCGTTCCGCATGAAGCAGCGCCTGGTCGCGCACCGTCGGGTGCACAGCGACGAGCGAGCCAGCTATGTGTGCGCACTCTGCGGGAAACACTTCAGCACGCACAGCAACAGGCAGAGGCATATGTTTATCCACACAGGCTTGAAGCCTTTCAAATGTGAGATGTGTGATAAGGGCTTCAAGCACGCCAGTGAGAAACGTGCCCATATAACTTATGTACACCTAAAAAAACCCTGGCCTAAACGAGCTAGGGGCAAGAGAAGATCGGACACTAGACCGGGTCATCTCCCCCAACAAGGCCAAGATATGGACCTAGCTAACCCCATTTGGCCCAATTGTGACCCCGAAATGATAGTTGATAAGCCTGTGTATTATAATGTTAAGTTATAG
- Protein Sequence
- MRCCVPNCKNDSRQISKSQGITFHVFPTERSLRFAWIRALGKEDWVPKKRSAVCSEHFLCEDLYETSSGLRKVKAGAVPMVLLVCRICLVMDTKLFSIRMNKLEQAYEHLTGISVQEEERLPQKLCVECAQRLFNFSRFRNKSLKANSLMVDILKQRDYITLEHIKSINRENNQLISPLTIKNLESVCYDNHEPTILPEEPETVNIDLKQENEIFLTEEVIDKEDSSDNYDLVIQSDNYSSDDCLPLEECKTVKEKKERRVEKSVKRAKKNENPDNIIRRMTSLLNDGWNENVATRTDSTVDADNVDILKRVSSCKYTNALYKCTTCFTGFYEEDAYNTHMARHNNMTIQNIKNIIRENRLLISPLTINNTQPEQNDHCYIQEKPAILTEPTAIDIDIKQENENSSEEVIDKMAEDNNGDYEDFVIQSDNFSSDDSLPLEKCKTVKKKKKQLKISMKRAKKIAKPVEPKIDRRRKPLLNDDLNEMLFTITDLTLEEQLAEILKRQESSNYKNAVYKCTACFKGFLDEDAYNSHIARHTNEAGEHPCAVCKTHFKHPHALRKHITAHHTQRFSCKQCNYVTTHRQTARLHERWHNGTKYSCPHCNHEFLKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLDNTQVPEDGPYCELCNVRFVSAEAHKKHISVSARHNTGSDKNREANKPTRKVRKTKEEKETERRSRELHKEDDKKRPYPSQIRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCDKSFRMKQRLVAHRRVHSDERASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCDKGFKHASEKRAHITYVHLKKPWPKRARGKRRSDTRPGHLPQQGQDMDLANPIWPNCDPEMIVDKPVYYNVKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869701;
- 90% Identity
- iTF_00869701;
- 80% Identity
- iTF_00869701;