Lfle020688.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989971.1:9308969-9319440[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0028 0.2 12.6 2.6 1 23 316 339 316 339 0.98 2 10 0.0012 0.083 13.8 5.9 1 23 346 368 346 368 0.98 3 10 5.6 3.9e+02 2.2 0.1 1 11 372 382 372 386 0.90 4 10 0.00097 0.067 14.1 2.6 2 23 400 422 400 422 0.97 5 10 0.00089 0.062 14.2 0.1 2 23 427 449 427 449 0.95 6 10 0.0077 0.53 11.3 0.1 2 20 464 482 463 484 0.94 7 10 0.0092 0.64 11.0 2.2 2 23 527 549 526 549 0.95 8 10 1.7 1.2e+02 3.9 0.0 2 23 561 581 560 581 0.91 9 10 0.0069 0.48 11.4 0.2 1 17 587 603 587 604 0.94 10 10 3.7e-06 0.00026 21.7 4.4 1 23 610 633 610 633 0.98
Sequence Information
- Coding Sequence
- ATGACGCAGCTCAAAATTTGCCGTATTTGTTTAGCTAGGAATGTAAGAATGTACAGTTATAATGAATATAAGTTGAAACAGTATTATGAAGAAGTGATGGAACAGAAAGTGTTGGATGGATTACCACTGTACTTCTGTTATTTATGTAGTGCTTTACTAAACAAACTCCACATGTTCAAAGAGAAATGCCATACTGGACAGAAAGCTCTCAATGAGCTATTGTTAAATGGACTTCTTACTTTATCCTCAGTATCAAAAATAGATAGAAAAAGCAAACAACTAGAATCTCCAATAGAAATCATGACTTCAAACACAAGAGTTAAAACATACAACATGAGACATAAATATAGGATAGAAGAGTTAAGAGAAGATAAAAATTCAGATAGAACAGAAGATATTTTAGTCACAGAAAATGTAAAACTTGATTATGATACTGATGATTCTTTTGGTTTTGACAATGATGTTAAGATAGTCGAACTTGAAAAAGCAATTGAAGAAAATTATATAGAGGAAAATGATGTTGAAGAAAATGATGTTAAGAAACCTAAGCTTGACGATGACTCATTATGTATAGAAGGCAAAACTGTCAATACTTTCGTTGAAGAGTTACCTATTGAAATGACTTCTGAGGTAATTAATATTGCAAAAGAAAAAATAAATAACAAAGGCAGAAAGCGGAAAATTGCTACACGCAGAAGAAGGCAGAGAAAAAAAGTTGAAAAGAATGATAGAGATGATGAGGATAATGACAGTGATGAGAAGATAATTAAGAATGATTGGAAGGAATCATCTGATACAGTGAAAGAGGGACAAACTAAAAAGAGAAGACCGCCTAATACAAGATATTTAGATCCAAAGCATTGGTTGAAAGTAACTTTGACTGATGAAGAAGCCATGGATACTTTTAAGGCGAGAGCTTTTGAACCTAAGTACTTATCAGCTACATACAAGTGTGAGAAATGTTACAAAGTGTTCTCTAAAGAAGAAATAAGGACTAGACATATGAAGACAAGCCACAGTGAGTCCATTGGAACCCACAGATGTCGTTTCTGCAGCGTTATATTTAAAAGAAAATCACGTCTAACTAAACACATGACTACACATTATTGTAAATTTGAATGTCTGAGGTGTGGCATTGTGTTTCCACTTGAAGACACCGCATACTGTCACAATGATGTTCACAGTGGCATATTGAGGAAATGCGAACAATGTGGACTGCAATTCAGACACTATTCTACATACTACACACACTTACGCGTGTACCACAGGAGTGAGAACGTTTGTATGCTGTGCGGCGCCTCGTTCGTCACACCGAAAGGCTTGCAACAACACAAAAACGTCAAACATATCAATTTTGATGTTAAAACACTAGAAGGGGACGAGAGCACGTATTGTGAGACATGTGACATAAAGTTCAAGAGCCAGGCGGCGTACAAGGAACACCTGGGACAGTCCATCAAGCACGCCAATATAACACCTAACGACATCGACTTAGAGAACTCAGCCATCGGTGACCTGGCGCCGGTCATTTTAAAGGAAAGTCCTCATCGGCCAATGCAAAGAAGATCTCAAGAAACCACATGTTTTGTATGCGAGAAAGTATTCCCGAACTATTACCGGTACAAGACTCATCACAGAGCCGAACACAAGGATGTGCCGATACCGACGGGCAGCACACAGATGTGTGAGATATGCGGCGCCACTATAAAGTCAGGCAGTATATCTATTCATATGAACATACACACTAGAGAGAAATTATACCCGTGTCAAATTTGTGGGATGCAATTTAATTATTCGTCCAGTTTGACCCATACTGGAGAAAAGCCGTATAAATGTCCGCTATGCGATAAAAGGTTTACGCAGAAAGGTAGCATGAAACTTCACCATCGCACTTTTCATTTAAAAGAACCTTATCCTAAAAGAAGCAGAAGAAAAAACGGAGATTCAGAAGGTGAATCTTCTTTCGCTGATTTGAAAGTCGGCAGTTGGTGA
- Protein Sequence
- MTQLKICRICLARNVRMYSYNEYKLKQYYEEVMEQKVLDGLPLYFCYLCSALLNKLHMFKEKCHTGQKALNELLLNGLLTLSSVSKIDRKSKQLESPIEIMTSNTRVKTYNMRHKYRIEELREDKNSDRTEDILVTENVKLDYDTDDSFGFDNDVKIVELEKAIEENYIEENDVEENDVKKPKLDDDSLCIEGKTVNTFVEELPIEMTSEVINIAKEKINNKGRKRKIATRRRRQRKKVEKNDRDDEDNDSDEKIIKNDWKESSDTVKEGQTKKRRPPNTRYLDPKHWLKVTLTDEEAMDTFKARAFEPKYLSATYKCEKCYKVFSKEEIRTRHMKTSHSESIGTHRCRFCSVIFKRKSRLTKHMTTHYCKFECLRCGIVFPLEDTAYCHNDVHSGILRKCEQCGLQFRHYSTYYTHLRVYHRSENVCMLCGASFVTPKGLQQHKNVKHINFDVKTLEGDESTYCETCDIKFKSQAAYKEHLGQSIKHANITPNDIDLENSAIGDLAPVILKESPHRPMQRRSQETTCFVCEKVFPNYYRYKTHHRAEHKDVPIPTGSTQMCEICGATIKSGSISIHMNIHTREKLYPCQICGMQFNYSSSLTHTGEKPYKCPLCDKRFTQKGSMKLHHRTFHLKEPYPKRSRRKNGDSEGESSFADLKVGSW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -