Lfle000036.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989979.1:432436-443574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 1.6e+02 3.5 0.5 1 12 271 282 271 289 0.87 2 12 4 2.7e+02 2.7 1.5 1 19 302 320 302 324 0.82 3 12 0.41 28 5.8 0.4 1 23 328 350 328 350 0.93 4 12 0.00085 0.059 14.3 0.3 1 20 356 375 356 377 0.93 5 12 0.0048 0.33 11.9 1.0 2 21 384 403 384 404 0.92 6 12 0.00016 0.011 16.5 0.6 2 23 420 441 419 441 0.94 7 12 0.00014 0.0094 16.8 0.3 1 23 446 468 446 468 0.98 8 12 0.0016 0.11 13.4 3.9 1 21 477 497 477 502 0.93 9 12 4.5e-05 0.0031 18.3 2.3 1 23 510 533 510 533 0.93 10 12 0.014 0.95 10.5 0.2 1 23 539 562 539 562 0.87 11 12 0.019 1.3 10.1 0.4 3 19 575 591 573 592 0.89 12 12 0.0043 0.3 12.0 1.1 1 23 605 628 605 628 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATAAACATAAATATCGAAGGTTACAATGTAAATGGAATATGCGTTGGCTGTTTGAACTATAATCGTCGCATGTTCTATGATTCTGAAGCGAAAGAGTGTTTTAAATTACTCGCGGATATAGAGGTATCAGACGGACTTCAAATCCAAGTGTGCTGGGAATGTCTGGCTTACGTAAAAAAAGCGATGAGTTTCAGGCAACAAATATTAAAGGCGTACGACTTTCTTATAGCTTACTCTAAAGAGAATGCATTCCTGGACTCGCCCAACGACTTCGCACCAGTAGCGACCACTGCGTTGGTGCAAGTCACCGACACGTCCCACTTTTATATGCCTGATGCAGACGAGGAGAAGCAGAAGGATGTCAAGGAGGAAGAGGAAGGGGTGGACTATAATTTTGAGGTACCAATCAAAGACGAATTGGAAGATTTAGCTATAGACACTCCATTCGAAGATCTGCCATCGCCAGTCAACAACCTGTCCTCAGACGAGGACATAAATTTGTCATTGTTAAAAGAGAAGACTAGAGTTAAGAAGAAAAGGAAGAAGAAAGACTCGATGGATATGGACTTCACAACTGATTATAAAGAAAAGACTGATAGAGTTAAGAAACGGAAACTTAAAAAGAAAAGTACAGAGATACAAGAAAACTTAGAACCACAATTAGATAAAGAAATCCAAAAAAAGAACAGAAAACTCAAGAACCTACCAGAAGACTTAGTAGAACTATTTAAAATGACTGAAGAAGAGATGTGGGTAGTTAGAGAACAAGATGTACAGAGTAAAGAGTTCAGTAAGTTGAGATATAAGTGTGAGTACTGCGTCATTGGCTTCAATACTGAGAAGTTGAAAGTGTTTCATGTCAATGGGAAACATCAGCCGAAAGGCGACATGTGTCATCAATGCAATATATGCCTCGCGTATTTCATTACAAAAGAGAACGTGGCGTGCCACAAGGCGCTACACTTGAACGCGTACAAATGTGTAATGTGTGGACTGAAGACTACAATGAAGATGCGCATGTTGAAGCATGTGGTTATACACAGGGATATACAACAGCATGTGTGTGAGACTTGTGGCGCGGAGTTTAGTACAAAATCGAAGCTATCCTATCATCGAGCTGTGTGTAAACAAGAAAAACCACAATGCGATTGCTGTGGCAAAGTATTCGCTAACAAAATGACCTTGAAATATCATTTGAAAATACCACCAAATAACAAAGAAGAGAAACCGAAGGAAAAGCTATATATACCGTGTAAAGGTTGCGATAAAGTATTTCATTCTAAGAAGAGCTACAGGGCACATGTTGTAATCCACGACGGTCTAACATACCCGTGTCCAATCTGCGGTAAACTGTTCCAATGGAAGCGCAACTTAGCTCGACACACCCGCAACCACAGGGAGAGAGCCGCGGGAGAGTTGCACGAGTGCAGAGCTTGCGGGAAGAGCTTCGCCAGTAGAGACTGTTACAACAATCATATGAGATTGAGTAAGAGACATGTACCTGAGGATGCTTATCAACACGAGTGTACTTATTGCGGTAAGAAATTCGCGAGCAAATGGTGTCTAACTGATCACATAGACTGGGACCATTTGAAACGTATCAAGTACCAGTGCAGCGTGTGTTTTAAGGCATTCAAAACAGCGAAAATAATGGTGGCCCACGTGAACAATATACACGAGGGAAAGAGGAAGGAAGCGGAGGGGGAGCATCTCTGTGATATCTGCGGCAAGTCTTATAAGACAGTGAAACGTCTAAAAGGGCACGTGTGGGCGATGCATACTAAACGCTCGAACACGAAGAGTTACAAATGCAAGCTTTGCCCCGCGACTTTCACTTGGCAGACGAGCATATACAAACATATGAAGATGATGCATGACACTAATAAGAAGAATAAGCCCACACGCTCCGCCCCACCAGTGAAGAAAGAAGAGCCTTACCCGGGAATTGAATTAGCTAATCGCATGCAGTACTTTCAACAAAATATTGCGAACAACTTGAATATAGTTCATATACAACCTTTGGGGGTCACTCAGAATTTAGTTTAG
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRRMFYDSEAKECFKLLADIEVSDGLQIQVCWECLAYVKKAMSFRQQILKAYDFLIAYSKENAFLDSPNDFAPVATTALVQVTDTSHFYMPDADEEKQKDVKEEEEGVDYNFEVPIKDELEDLAIDTPFEDLPSPVNNLSSDEDINLSLLKEKTRVKKKRKKKDSMDMDFTTDYKEKTDRVKKRKLKKKSTEIQENLEPQLDKEIQKKNRKLKNLPEDLVELFKMTEEEMWVVREQDVQSKEFSKLRYKCEYCVIGFNTEKLKVFHVNGKHQPKGDMCHQCNICLAYFITKENVACHKALHLNAYKCVMCGLKTTMKMRMLKHVVIHRDIQQHVCETCGAEFSTKSKLSYHRAVCKQEKPQCDCCGKVFANKMTLKYHLKIPPNNKEEKPKEKLYIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRERAAGELHECRACGKSFASRDCYNNHMRLSKRHVPEDAYQHECTYCGKKFASKWCLTDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHEGKRKEAEGEHLCDICGKSYKTVKRLKGHVWAMHTKRSNTKSYKCKLCPATFTWQTSIYKHMKMMHDTNKKNKPTRSAPPVKKEEPYPGIELANRMQYFQQNIANNLNIVHIQPLGVTQNLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492364;
- 90% Identity
- -
- 80% Identity
- -