Lfle014383.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989965.1:1714865-1722268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00078 0.054 14.4 2.4 1 23 246 268 246 268 0.98 2 11 0.00023 0.016 16.1 1.7 2 23 276 297 275 297 0.94 3 11 1.1 76 4.5 4.4 1 23 301 323 301 323 0.96 4 11 2e-05 0.0014 19.4 0.4 1 23 328 351 328 351 0.98 5 11 0.066 4.6 8.3 3.9 1 23 356 379 356 379 0.91 6 11 0.78 54 5.0 1.0 3 21 396 414 395 419 0.90 7 11 0.0085 0.59 11.1 1.5 3 23 428 449 427 449 0.95 8 11 3.9e-06 0.00027 21.6 0.2 1 23 501 523 501 523 0.99 9 11 3.3e-05 0.0023 18.7 4.6 1 23 529 551 529 551 0.98 10 11 2e-05 0.0014 19.4 0.6 1 23 557 579 557 579 0.98 11 11 0.00027 0.018 15.9 0.2 1 23 585 608 585 608 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAAGTTAAAGTGTGCCGTATTTGTTTAGCAGTGGATGTAAAAATGTACGACTTGCAGTCTTACCCATTGGATTCCTATTTTGGATCTCTAGCAGGAAGTAATATATTATCAATAATAAACTCTCCACCATATGCCTGCTACTTGTGTGCTACACTTGTCAAGAAGTATTACTTTTTCAAACAGAAGTGTCTCAGGAGTCAAGCAGTACTTTTTGGTTTATTAGATCATACTGGAAAGTTAGTACCAACAGAACTAAGAAAGATCAATCAACAAAATCAGCTGTCACATTCAAACTTACCGGCATATTCCGTGCCAGATGATAATACAAACATTCTCAATACCGTTATCAAAACGGAACCAAAACAAGAAGACATAAGATCAAACTTTGTTAAAGTAGCTTGTATTAAAGAAGAAGAAGAATGTGATGTGTTGTCACCAGAGAGATGTGTGTCATCTGATGATGACGAGCCGTTGTCTTTTCATAGAAACAAGAAGACTAAAAAGAGAAAAAGTAGAGTTAAAGATTATAAGGATGATCTTGTGGATGTTGAACCCACCGAAACCGTTGTAGTGCCCACTATATCCCTCCCAAAGAAGAGAAAACGGGACAGGAACAAAAAACCTAAAGATGGACTAGGAGATAACATTATTGTGATTAATTTGTCTTTACAAGATCAAATAGAAGAGATAAACAAAAGAAAGGAGACATCTAACTACCATAACTCACCGTTTAAATGTGACTTGTGTTATAAAGGGTTCACCGACACATATGCCTGGGAGCATCATGTGAAGAAGCACTCTCCGACTGCTGGCGACTTAGAATGTGCAATATGCAGGTTCAGGTTCAAAACCAAATATGATCTGCAAAAACATTTGTTCTATCATAAGAAGAAGTATCAATGCAAAACTTGTTCTCACATATCAACAAATACAACACAAGCGAAGCACCACCAAGCTGAGCATAAAGGAGTTACATATGAGTGCAAGTTGTGTGGGGAAGTGTTCGCTGTAAATAGGAAGTACATCTCGCACATGCGCATGAAGCACACGACTACGGAGTTCATCTGTTGTACTTGCGGGTACTCGTGCTCCAGCAAGCTGGGCCTGGCCAGGCACAAGACTCTCATGCACAAGGATGTTAGGGAAAAAGGACAAAGTATTCCGGAAGACGGCCCTTATTGTGCAGAATGTGACGTGAAGTTCGCGTCGGCTGAAGCGTTCAAGTGTCACATGGAGAGGACCACCAAACACACGTGGGATGCAGACAGTAACGACTGTCGCACGTGCGGCGAGTCGTTCAACGACGAGACGGAGATGAAGATGCATCACCTGAAGGAACACGCGAGGAAGAGACCCAAGTACTACCGCAGACAGCCCACCGTCAAGTGGCCCGCCAAGTGCGAACATTGTTCAGAAATGATGCAGAACGGTCGTGAGCGCGTGGCCCACTTCCGCCGCGTGCACCCCGACAAGAAGTACCCCGTACAGAAGAACTACGTGTGTGATATATGTGGGAAGAGTTTTATTGGCAACGCGTTCCTGATATACCACAGACGCACACATACACAGACGGGCTCACACAAGTGCGACAAATGCGACAAGGCGTTCTTCGACAAGTACATACTGAAGCGACATATGAAGACTCACAGCGACCTGCGACCCTTCCCTTGTAGCGTCTGCTTTAAAGCGTTCAAGACTAAAGGAGCGCTTGATAGGCATTTTAGAATACACACGGGACAGAAACCTTACGAGTGCGAGATATGCGGGAAGGCGTTCAACCAAGGCAACAGTCGCAAGCTGCACATCACCACTGTTCACTATAAACAACCCGCGCCCTATATCAGTAGGAAACGAAGCAAGAAACACAAGAACAATGATAAAGAACCACAGCTTTAA
- Protein Sequence
- MEKVKVCRICLAVDVKMYDLQSYPLDSYFGSLAGSNILSIINSPPYACYLCATLVKKYYFFKQKCLRSQAVLFGLLDHTGKLVPTELRKINQQNQLSHSNLPAYSVPDDNTNILNTVIKTEPKQEDIRSNFVKVACIKEEEECDVLSPERCVSSDDDEPLSFHRNKKTKKRKSRVKDYKDDLVDVEPTETVVVPTISLPKKRKRDRNKKPKDGLGDNIIVINLSLQDQIEEINKRKETSNYHNSPFKCDLCYKGFTDTYAWEHHVKKHSPTAGDLECAICRFRFKTKYDLQKHLFYHKKKYQCKTCSHISTNTTQAKHHQAEHKGVTYECKLCGEVFAVNRKYISHMRMKHTTTEFICCTCGYSCSSKLGLARHKTLMHKDVREKGQSIPEDGPYCAECDVKFASAEAFKCHMERTTKHTWDADSNDCRTCGESFNDETEMKMHHLKEHARKRPKYYRRQPTVKWPAKCEHCSEMMQNGRERVAHFRRVHPDKKYPVQKNYVCDICGKSFIGNAFLIYHRRTHTQTGSHKCDKCDKAFFDKYILKRHMKTHSDLRPFPCSVCFKAFKTKGALDRHFRIHTGQKPYECEICGKAFNQGNSRKLHITTVHYKQPAPYISRKRSKKHKNNDKEPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -