Lfle005599.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989976.1:2776219-2778350[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.021 1.5 9.9 0.9 1 23 42 64 42 64 0.95 2 16 0.18 13 6.9 0.8 2 23 92 114 91 114 0.94 3 16 0.022 1.6 9.8 1.0 2 23 135 157 134 157 0.95 4 16 0.00012 0.0082 17.0 2.8 1 23 162 185 162 185 0.96 5 16 0.45 31 5.7 0.4 1 23 189 212 189 212 0.93 6 16 0.13 8.8 7.4 3.3 2 23 215 237 214 237 0.96 7 16 0.47 33 5.6 0.8 2 21 243 262 242 263 0.92 8 16 0.0015 0.1 13.5 5.3 1 23 312 334 312 335 0.96 9 16 2.6 1.8e+02 3.3 0.0 2 23 364 386 363 386 0.93 10 16 0.00027 0.019 15.8 0.1 1 23 408 431 408 431 0.96 11 16 4.2e-05 0.0029 18.4 0.3 1 23 436 458 436 459 0.95 12 16 0.00026 0.018 15.9 5.0 1 23 466 489 466 489 0.95 13 16 1e-05 0.00071 20.3 0.7 1 23 494 517 494 517 0.96 14 16 0.00084 0.058 14.3 4.0 1 23 521 544 521 544 0.97 15 16 0.0053 0.37 11.8 3.1 2 23 551 572 550 572 0.97 16 16 0.03 2.1 9.4 1.6 1 23 578 600 578 600 0.96
Sequence Information
- Coding Sequence
- ATGTTATTGCGTATAGGTTCAGAAAGAGAGCCAAGCAAGAAAAGTGCTAACTTTCTAAGAAGGAGGAACCTGGTTGTCCTATTCAACAACACCACCCTCATTCCTTTTAAATGGAGAGGGAAATACCTCTGCTTCTATTGTGGAAATGACGTAGACAATTACAAGCAGTTACAAAAGCATACGGACACCCATGGCGACTGTTCTGATAGGGACAGAGCCATTCGACTTGTAAAATCGGCCGATGCCGAAACTAAAATTGACGTTTCAGATATAATGTGTAAAATATGCTTGCACTCGTTTAATTATTTCGATGATATAGTCAACCATTTGATCTCAAAACACGATCTCCCTTATAGTAGGCAAGCAGATCTAATGATTACTCCATATAGGCTTCTAGATCTCCAATGCTTGAATTGCGATAAGAAATTCGATTATTTCCCGAAATTAGTAACTCATAACAACACTAGTCATCCGATAGATTGTTTTTCTTGTAAAGAATGCAAACAAGTATTTAATAAAAAACGTGATTTGAATACGCATGAGAGGAATTATCATAGGAATAGTTATCCATGCAACAAATGTAGTGACATTTTTCCTACGAATGTAACGCTAAGATTTCACAGGTTACGTGCGCACCCCTCTACTTGCAACATTTGCTTTCATACATTCTCGTCAGATATTAAACGATTAAAACATATGAAATCTGAACACGCGTCAGATGAAACTCAATGCGGTTTCTGCCACCAATTTTTAGCCACAAAACAAGCGTTTCTACGCCACGTATCCACTTGTACGGCAAAGACAGATTCGTCTTTAGAAACAATAATTGTTGACGATGAAGAGAAAAAAGTGGCGACCAAAGATCTGAGGAATAGTATTGCGGCAATAATAAACATGTCCACAGCTCTTCCGTTTAAGTTCTTTATGAGTAAATTTAGATGTTTTTATTGTCCAAAAGACTTCCAAGACTGCGATAGTTTAAAAGAACACACATTAATGCATCATCCCCAATGTGACGTTACCGATAAAAGCATGAAATTACGAAACAGATACGACGGAAATAAAATCAAAATTGATATAGCATCGCTCTCATGCAAACTTTGCTTCGAACCGTTAGCTGATTTGGACGTTTTAATCGATCATTTGACTTCAGAACATAAAGTGAATTGCAATAAGTCTGTTGAGAGTATCTTGCAGCCGTTTCAGTTAATAAAAAATAACTACCCATGTCCTTTATGCGGAGAAGTTTACAGATATTTTGGGTTGCTACTGAAGCATGTCAGCAAAAGTCACACGGGGAATAAGTATATATGCGTTTATTGCGGACAGCCATTCCGAACAGATCCAAATCTCAGAGCGCATGTGATACGTCACCATAAAACTATTACAAACAGATACGAATGCCACCATTGCGATTTGATATTCTCGACGTACAACCACTTAAAAGAACACTTGGGTAAAGACCATAATGTGAAGATGTTCAATTGTCTTGAATGTTCGGAAAGATTCGCGACTAAGTACTGGCTGCAGCGACATATGCTGAAAGTTCACGGGGAAGGACACAAATGTAGCTTCTGCGATAAATCCTTTATCAAATACTCATTTATGATTAACCATGTTAGACGGTTACATTTCAAAGAAAAGAATGTCAAATGTAAAGTATGTCATGAAAGGTTTTTCGATAGACAACGGCTTAATATGCATATGGTGAAACATGTCGGCGAAAGAAACTTCCACTGCGATATTTGTTCGAAAAAGTTTTTGTGGAAACGTAATTTGAGGGCGCATATCGCTTCTCATGTTAGGAATTCGAATGCACAAGGTGCCATCACCTAA
- Protein Sequence
- MLLRIGSEREPSKKSANFLRRRNLVVLFNNTTLIPFKWRGKYLCFYCGNDVDNYKQLQKHTDTHGDCSDRDRAIRLVKSADAETKIDVSDIMCKICLHSFNYFDDIVNHLISKHDLPYSRQADLMITPYRLLDLQCLNCDKKFDYFPKLVTHNNTSHPIDCFSCKECKQVFNKKRDLNTHERNYHRNSYPCNKCSDIFPTNVTLRFHRLRAHPSTCNICFHTFSSDIKRLKHMKSEHASDETQCGFCHQFLATKQAFLRHVSTCTAKTDSSLETIIVDDEEKKVATKDLRNSIAAIINMSTALPFKFFMSKFRCFYCPKDFQDCDSLKEHTLMHHPQCDVTDKSMKLRNRYDGNKIKIDIASLSCKLCFEPLADLDVLIDHLTSEHKVNCNKSVESILQPFQLIKNNYPCPLCGEVYRYFGLLLKHVSKSHTGNKYICVYCGQPFRTDPNLRAHVIRHHKTITNRYECHHCDLIFSTYNHLKEHLGKDHNVKMFNCLECSERFATKYWLQRHMLKVHGEGHKCSFCDKSFIKYSFMINHVRRLHFKEKNVKCKVCHERFFDRQRLNMHMVKHVGERNFHCDICSKKFLWKRNLRAHIASHVRNSNAQGAIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -