Lfle008098.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989957.1:2199724-2213890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00036 0.025 15.5 0.9 1 23 20 42 20 42 0.98 2 13 0.0015 0.1 13.5 0.1 1 23 108 130 108 130 0.93 3 13 0.00024 0.016 16.0 0.4 1 23 218 241 218 241 0.98 4 13 0.00025 0.017 16.0 1.4 1 23 247 269 247 269 0.98 5 13 0.0028 0.19 12.7 1.4 1 23 275 297 275 297 0.98 6 13 0.00011 0.0074 17.1 1.0 1 23 303 325 303 325 0.98 7 13 1.3e-05 0.00089 20.0 2.1 1 23 331 353 331 353 0.99 8 13 4.1e-06 0.00028 21.6 2.5 1 23 359 382 359 382 0.97 9 13 2.3e-07 1.6e-05 25.5 0.5 1 23 388 411 388 411 0.97 10 13 0.52 36 5.5 1.0 3 23 420 439 418 439 0.89 11 13 0.0064 0.44 11.5 3.7 1 23 445 467 445 467 0.98 12 13 0.04 2.8 9.0 3.3 1 23 475 498 475 498 0.95 13 13 0.36 25 6.0 3.8 2 23 526 548 526 548 0.94
Sequence Information
- Coding Sequence
- ATGAAGTTTGAAGAAAAACTACAAGAATGGATAGTGAAATTAGAGAAAGTGGAAATGCACAAATGTGAGAGGTGTCCTAAAGTATTCATAAAAGATGCAGATTTGGTCAAACATGCTAAACGTCATGATGATGACCTCCTAACAAGTGCTCTCAATGCATATGTGAAGATAGAAAAGGTTAATATATTCGATTGTGACCATTGCAGACTAGGCTTCTTAACTAAAACAGAAAGTTTATTGCATAGAGTGGAACACATACAGAAATCTATTGAAAATGAAAGATTATACCAAAAATATGAAGATACAAGTATTGCGAAACCTTATAAATGTCCAGAATGTGACTACAGGTTTGTTGCAGTAACAACCCTTAAAGCACACTCTGTAGTACACCGACCGTTCCCACATATCTGTCACTGCGGGGTTGGATACTATGAAATACAAGATTTAAATCAACACAAAAAATTAGTGCATAGGGTAAAGGTAGACACTAAAACAAAAGCTGAAAATAAGAACCATATCAGAAAACGTAGAGATACATTTAATGTAAAATTATCGCCTAAACATCCTGAATTTGATAAACAAGTGAGGAAAGTATTAGATGGAGTGAGACGAGCACATTTAGATATAGAATTTAAATCAATTGATGACAAGTTCCAATGTCCTGACTGTTCCAAATTGTATCCAACAAAGGCAAGTGTAAAACTACATTATCGAAGCATACACAGAGGCGAAAGACCTTACTGTTGTAATTTATGTAGCAAAAGTTATACACAAGCTGGTCCACTAATTGAACACTTAAAGAAACATGCAGGAATTAAGGATTTCAAATGTCAATATTGTGATAAATTATTCTATAATATAGACGCTCAAGATCGACATGAACGCACACATACTGGGTCAAAGCCATTTGTTTGCTCGTTTTGTGATAAAGCTTTTAGTGACCCGAGTGCTCACACTCGTCATGAAAGGATTCACACTGGAGATAAAAGATACCGTTGTCAACTATGTCCTAAGGCATTTACAGACCACAGTGCTTTGTATGCACACAAGAAAAGACATGAGAACAAACGAGACTATAAGTGTGACAAATGTGGAAAAAGATTCTTTAACAAATCTTTTCTTTATAAACATATATCTGTTATACATAATCGTGAATACAAGTTCACGTGTGACTACTGCCAAAAAGTATTTAGTTCTAAAGGAAATTTATCAGTCCATATACAAAGTGTTCATACACACACACGAGAAACAAGCATGTGTCAGATATGTTTCAAAACTATGCTGAGCACGAATTTAAAAAAACATATGGGAATTCACGATAGTGTAAAGAAGTTTACTTGTGATATTTGTTATAAACAGTTTCATAGTAAGGATGTGTTTGTACGCCACTTATCGAGGCATAATGATACCAATGTTAAAAAGTTTGAATGTCACGATTGTTCAAAGCAGTATTATAGTAAAGCCGTTTTAGCTGGCCATATTTATAAGTGTCATGTAGCCATATCTTGTAAATTATGCTACGGTTATTTCTTGAACAAAACCCGCTTCAAAGAACATAAATTGGCGGAAAGTGAGTCTTGTGACATATGTGATAAGGAGTTCTTTTGTAAGGGTAAATTAGATAAACATGTTAGACACGTTCATATAAGAAAACCACAAAAGTGCAGAACAAGCGACAGGGTGGCGTGGGCTGGTCATTTTCACTGCGAACTATACAACAAGAGTCGCACTGCTAACGCACTCGGCGGCAAAAACCACGCTCCAGTGACCGCCGCGGCTGACCGCCATGAATCGAACAAACCACTTTGTATGCACCAACGCAAACGGCGGAAGATGGCTCCCCGCGCTGCGCCGTCGTTTGTTCTGCGTCTTACTGTTGCAAAATCAATAAAGTTAAAGTTTGGGAGGCGAGTGGCGCGCCGCATCGGCCGCGCCGCGCCGCTCAATACGCGCGGCGCGCGCGTACCGCGCGGCATTCACCCTCTCCAACCAGTACCCGCTACCTCACTCGCAGTCTGTCATTGTTCTATATACAACCACTCAAATATACCAATTAATCTGTGTATTCCATCATCTACAACAAAAAATAACAATATAGCATGTGATTGGTGA
- Protein Sequence
- MKFEEKLQEWIVKLEKVEMHKCERCPKVFIKDADLVKHAKRHDDDLLTSALNAYVKIEKVNIFDCDHCRLGFLTKTESLLHRVEHIQKSIENERLYQKYEDTSIAKPYKCPECDYRFVAVTTLKAHSVVHRPFPHICHCGVGYYEIQDLNQHKKLVHRVKVDTKTKAENKNHIRKRRDTFNVKLSPKHPEFDKQVRKVLDGVRRAHLDIEFKSIDDKFQCPDCSKLYPTKASVKLHYRSIHRGERPYCCNLCSKSYTQAGPLIEHLKKHAGIKDFKCQYCDKLFYNIDAQDRHERTHTGSKPFVCSFCDKAFSDPSAHTRHERIHTGDKRYRCQLCPKAFTDHSALYAHKKRHENKRDYKCDKCGKRFFNKSFLYKHISVIHNREYKFTCDYCQKVFSSKGNLSVHIQSVHTHTRETSMCQICFKTMLSTNLKKHMGIHDSVKKFTCDICYKQFHSKDVFVRHLSRHNDTNVKKFECHDCSKQYYSKAVLAGHIYKCHVAISCKLCYGYFLNKTRFKEHKLAESESCDICDKEFFCKGKLDKHVRHVHIRKPQKCRTSDRVAWAGHFHCELYNKSRTANALGGKNHAPVTAAADRHESNKPLCMHQRKRRKMAPRAAPSFVLRLTVAKSIKLKFGRRVARRIGRAAPLNTRGARVPRGIHPLQPVPATSLAVCHCSIYNHSNIPINLCIPSSTTKNNNIACDW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -