Lfle004855.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989978.1:6775873-6782478[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 10 7.3 0.1 1 23 329 352 329 352 0.95 2 13 0.0015 0.1 13.5 0.9 1 23 356 378 356 378 0.99 3 13 0.00035 0.024 15.5 3.3 2 23 383 404 382 404 0.97 4 13 0.00078 0.054 14.4 0.5 1 23 410 433 410 433 0.96 5 13 4.8e-06 0.00033 21.4 0.4 3 23 441 462 440 462 0.98 6 13 1.2e-05 0.00084 20.1 4.3 1 23 468 490 468 490 0.97 7 13 0.0025 0.17 12.8 0.3 1 23 497 519 497 519 0.98 8 13 0.001 0.069 14.0 1.1 1 23 523 545 523 545 0.98 9 13 0.0018 0.12 13.2 4.6 1 23 555 577 555 577 0.95 10 13 0.00046 0.032 15.1 0.2 1 23 582 605 582 605 0.91 11 13 0.11 7.8 7.6 0.8 2 23 617 635 616 635 0.94 12 13 0.00047 0.033 15.1 0.9 1 23 642 665 642 665 0.92 13 13 0.00018 0.013 16.4 1.3 1 23 670 693 670 693 0.94
Sequence Information
- Coding Sequence
- ATGACGGAAATATGGAATTTAAGTACACTATGTCGGTGTTGTCATACGGACGGGCGTTTCAAGAATCTGAGCCGTCTTTATCACAGTGACGAAGGTCTTGAAATATATGAAGTAATGTTAAAGGAAACTTTTGCACTCACTATATGTCGGCCTCCGCCTCAAGTGGAAGCATCATACTCAATATGTGAGAACTGTATAAACAAGTTGAGAGATGCATCTCAGTTCAGACTACAAGTGCTTGCCTGTGAGACTAAGTTTCAAGTTTATTGTACTAATGAACAATTTCTAAATGGTCTTGTGGAGAATATAAAGGCAGAAGTAGAATCTAGTTTCTTGGTACATGATGAACAGACTATGGATAATGATGACCAGGCTATTGATAATGATGAACAGGCTATGGATAATGATGACCAGGCTATTGATAATGATGACCAGGCTATCGATAATGATGAACAGGCTATGGATAATAATGAACCGGCTATGGATAATGATGACCAGGCTATCGATAATGATGAACAGGCTACGGATAATGATGAACAGGCTACGGATAATGATGACCAGGTTATGGAAAATGAGGACCAGTATTTTCATCAAGATTTGTTAGCACCAGAAATAGACATATCAAATCTCTATAAACAAATAGAAGGCAATAAGTTGACATCTAACAATAATAAGTTGAAATCTGACAATAATAAGTTGAAATCTGACAATAATAAGATGAAAACTATAGTTAAAAGAAAGGGACGTAGGATAACAGTTAATCTCAAGAAAATAATTCGAAGGAAGAAATCTCCGGTAAAGCGTAAACAGAAACCAAACCATTTACTTAAAAAGGAGCAATATGAGAAAAAACAGACAAATGTAGGAAAAAATGAGAAAATTATCGAAAATGAAAAATCCCCGGAACAGTGTAAACAGAATAAAAAAAGATTACCAATTCGCGGAAATCTAATAACACAAGTTAAAACAGGCGACACCATCAAATATTCTTGTACAGTTTGTGGCGTCAGTTCTTACATTAAAGTCGAGGTATTGAAGCACGTGCGATTGCAACATCCCGGTATTTACAAGTGTGACTTTTGCGAGGTAAATTTCGTGAGTCTCAGCGCACTTTATGATCATAAAAAACGACATCTTGAAAGAAATAAATGTAAATTTTGTAGCAAAGAATTCTCAACAAAATTTTCTTTGAAAGAACACGAAAATAGTCATACTAAAGAATTCGTTTATACTTGCGATATTTGTCAGAAACAACTTATGTACAAAAGCACTTTGGTGAAACACATACTTTTAATGCACGGCGATAAAAAAGAACTGCTCTGTGATATATGCGGCTGGGCATTTAGACAAAAGTGCAATTTAGTATCACATATTCGTATTGTACATTTAAAACTGCGTCCACATCCATGCAAGATATGCGGCAAAACGTATTCAGTTAGAAGACACTTAAATTATCATATGCAATCTCATAATGATAATCCTAAGCCTTACCAGTGTGATGTGTGCCTAAAAAGGTACGCTGCTCAAATAAATTTGAACATACACAAATTAAGACATGATAATAAATTCAAATGCAGAGATTGTAAGGTTATATTCGATAATAGGGAAGATTATATTAACCATAAGAAAATTCACGCGACTCGATCTATAAGTTCCCTAAAATATCTTTGCAATATTTGCGGTAAATCTTTTATGTGTAAACACACATTAAACAGACATATTGACAGTCATAAAGGAAAAAAGTTTCCTTGTGAAATATGCGGAGCAAAATTCTCTCAAAAGTTTATGGTGAGAAGGCATGCGTTAGCGAAACATGGTCCTAATGGAGATGTTATATTGAAGAAAACCAGGTGTGATTTGTGTAAGAAACCGTACTATAATATGGAACGTCATATAAGAATACATAGTGTTGATGCTAAGAGGTTCTTCTGTGATATTTGTGGTAAAGGGTATTCTGAAAATAAGGGACTTAATAAACATAAGGAACAGAAACACTTAGGTGTGACGCACGACTGTCCACTGTGTGGTAAGAAATATATCAATAAAAAATCTTTGGTGACACACAAGATTAAAGTTCACAAGAAGGAGGCTGTCTATGATAACACAGTCAGTGATGATTTAGATTTAACTAATGCTAAATAG
- Protein Sequence
- MTEIWNLSTLCRCCHTDGRFKNLSRLYHSDEGLEIYEVMLKETFALTICRPPPQVEASYSICENCINKLRDASQFRLQVLACETKFQVYCTNEQFLNGLVENIKAEVESSFLVHDEQTMDNDDQAIDNDEQAMDNDDQAIDNDDQAIDNDEQAMDNNEPAMDNDDQAIDNDEQATDNDEQATDNDDQVMENEDQYFHQDLLAPEIDISNLYKQIEGNKLTSNNNKLKSDNNKLKSDNNKMKTIVKRKGRRITVNLKKIIRRKKSPVKRKQKPNHLLKKEQYEKKQTNVGKNEKIIENEKSPEQCKQNKKRLPIRGNLITQVKTGDTIKYSCTVCGVSSYIKVEVLKHVRLQHPGIYKCDFCEVNFVSLSALYDHKKRHLERNKCKFCSKEFSTKFSLKEHENSHTKEFVYTCDICQKQLMYKSTLVKHILLMHGDKKELLCDICGWAFRQKCNLVSHIRIVHLKLRPHPCKICGKTYSVRRHLNYHMQSHNDNPKPYQCDVCLKRYAAQINLNIHKLRHDNKFKCRDCKVIFDNREDYINHKKIHATRSISSLKYLCNICGKSFMCKHTLNRHIDSHKGKKFPCEICGAKFSQKFMVRRHALAKHGPNGDVILKKTRCDLCKKPYYNMERHIRIHSVDAKRFFCDICGKGYSENKGLNKHKEQKHLGVTHDCPLCGKKYINKKSLVTHKIKVHKKEAVYDNTVSDDLDLTNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869880;
- 90% Identity
- -
- 80% Identity
- -