Lfle005600.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- ZBTB47
- Assembly
- GCA_905147015.1
- Location
- LR989976.1:2778383-2782221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.004 0.28 12.2 3.5 1 23 33 56 33 56 0.95 2 21 0.079 5.5 8.1 0.0 2 23 82 104 81 104 0.96 3 21 0.078 5.4 8.1 1.3 3 23 128 148 126 148 0.96 4 21 1.3 90 4.2 0.2 6 23 155 173 154 173 0.93 5 21 0.00087 0.06 14.2 4.0 1 23 179 201 179 201 0.97 6 21 0.12 8.1 7.5 1.2 1 23 277 299 277 299 0.95 7 21 0.43 30 5.8 0.0 3 23 329 350 327 350 0.93 8 21 0.008 0.55 11.2 0.2 2 23 371 393 370 393 0.95 9 21 0.0019 0.13 13.2 4.4 2 23 399 421 398 421 0.95 10 21 0.0018 0.13 13.2 0.7 1 23 426 449 426 449 0.96 11 21 0.16 11 7.1 0.4 2 23 452 474 451 474 0.95 12 21 0.19 13 6.9 2.0 2 21 481 500 480 501 0.92 13 21 0.0065 0.45 11.5 0.6 1 23 561 584 561 584 0.90 14 21 0.064 4.4 8.4 0.1 3 23 613 634 611 634 0.94 15 21 0.12 8 7.6 0.2 3 23 658 680 656 680 0.94 16 21 0.00058 0.04 14.8 0.6 3 20 687 704 685 708 0.90 17 21 0.0089 0.62 11.1 0.3 1 23 713 736 713 736 0.97 18 21 0.00015 0.01 16.6 0.4 2 23 742 764 742 764 0.94 19 21 0.00014 0.0095 16.8 4.7 1 23 768 791 768 791 0.97 20 21 0.00018 0.013 16.4 0.6 2 23 798 819 797 819 0.96 21 21 0.0052 0.36 11.8 2.3 1 23 825 847 825 847 0.97
Sequence Information
- Coding Sequence
- ATGACAACAACCAAACGAAACAAACTAATGAAAAGAAACGCCGTTCTAGTTCTAGAACACTCCACGGTCATGCCCTTCAAGTGGCACAGGCAGAACTACCTCTGTTTCTATTGCCATCTCACTTTCAAAGACACACAACTACTCAAAGAACATTCTAGAACTGAACACAGAAAGGCCAATATTAAAGCAGCCGTTGCGTATCTAAGGAGAGATGAAAAAGTCAAAATTGATATTTCAGAGTTAAAATGTCGTATCTGCGATGTGAATTTGAGTAATTTAGATGATATTATTGACCATATTAAAGTAGCACATTGTAAAAATTTTAATGAAGAAATAGGATTTGGATTGATACCTTATGTATTGCAAAATGATTTGATGCATTGCGCGGTTTGCAAAGAGGAGTTCCAGTATTTTGTAAAGTTGAATCAGCATATGAATGAGCATTTCGGAAACTATATTTTTTGTGGGAAAACCTTTCAAATTATGAGCAAAATGAAAGTTCATTTACAAGAAGTGCATATAAGAGAGAAGAAATTCTCCTGCTCTGTGTGCGATCAGAGATTTTTCTCTCGAACTCACGTACAAAAACATATGGTGAAACATTTCGGGGAGAAAGTCCACCAATGCGAGAAGAAGCAGCCAGAAGTGTACCACACCTTCATTTCGCCTGAAACTCAGGACATATATCTGAGGTTTGCGCGAGCATTTGTTCCATATGTTAAACCGAGGAAATACAATGGAAGCGAATCGTCATCGATGCGCAGAAGACGAAACCTCCAAATAATATTCAACAACACTTCAATTATTCCCTTTAAGTGGCGAGGCAAATATCTATGCTTTTACTGCAGCAAAGATATCGCGGAATATACTGAGCTTAGGAAGCATACTAAATCTCATGGAGACTGCTCCACTAGGGACCATTCGTTGAAGGTCTTGAAAGGCGGACAGAATATGGAAATCAAAGTAGATGTTTCTGATATAAATTGTGAAATATGTGCGGAACCTTTTCCTAGCTTCGATGAAGTTATAACCCATCTATTCGTTAAACACAAGCTTGAATACGATAGGTCAGTCGAAATGGCTGTAGAAGAATACAGGTTGATAGATCTAAGTTGCTTAGTTTGCGATGAAAAATTCACTTATTTCGGTTATCTAGTGTCCCACGTTAATGTAAATCATCCGAAAAATTGCTTAATATGTGATAAATGCCACCAAAAGTTTAATAAAAGACGAGATCTATTTTCTCATATGAAAAACTATCATAGGGAGGGTGGTTACCAATGTGAACTGTGTCCACAGGTGTTTAGCTCGCTAAATATCTTAAGAAAACATAGGAATAATAGGCATTTGACCAGGTGTAATATTTGCCATTTAAGACTACCGTCCGCTGCTTTGAAACAGAAACATATAGAAATTGAACATCCAGATGATGGATCTCTTCAATGCGATAGTTGTTTTAAAGAGTTTCACACAAAACAAGGATTGCGAATGCACAACAGAAAATGTAAAGGCGAAGGTATCTTTGAAATTGCAATAAAGAAAGAAGAATACGTAGCTATGGATTTAGACCAAAATTACGACGACGAAGTTAAAAGGCCTAGTGTCAAACAGATTCGGGAAAATATCGTTATAGTTATTAACATGTCGACAGCTATACCTTTCAATTTCTATAAAAATAAGTTTAACTGCTTTTATTGCTCAAAAGACTTTCCAGATTCTGACTCAATGAGAGAGCACACTGTTTTAGAACACCCAGTATGTGATATCAAACAAAAATGCATAAGAAAATGTAGGGAATCGGTTGCGTGTGTCAAAATCGACGTGTCCTCTTTAGCTTGTAAAATATGCTTCGAATCCATGTCTGATTTAGATAATCTACTTGATCATTTGATATCGAAACACGATGCTAATTACGACAAATCAATCACAACATGCTTGCAGCCATATAGGCTCATAAAAGATCACATGGCATGTCCTAATTGTCCGGGAGAAATATTTAGATTTTTCGGCACTCTTCTTAAACATATGAACAAGAAGCATACGAATAATAATATAATATGCGTCTACTGCGGCCAAACTTTTCGTCGCGACCAAAATCTACGCGTACATATTTGGCGACATCATAGAGATGGAAGGTTCAAGTGTAATATTTGCGGTGCCGAGTGCAATATTCCCTCAAGACTGTACATGCACATGGCAAGAGCCCACGGCGTCAAAGCAGCTAAATGTCCCAAATGTCCGGAAAGCTTCTCAACCCAATATCTTCGTCAAAAACATTTGATAGAAGCCCATAATTGCGGACACAAATGTTCTTATTGCGGGAAGTTGTTCACTCGTAACTCTTTCATGCGAGATCACGTCAGAAGAACGCACTTAAAAGAGAAGAATGTTGAATGCTCTATATGCAATATGAAGTTTTTCAATAATATTCTTCTAAGAAGACATATGGTCAAACATAGTGGGGAGAAAAATTTTCATTGTGATGTGTGCGGCGAAAGGTTCTTTTGGAGAAAGAGTCTTAGGACGCATATGGCTAGGCATAATAAGCACATTAATCCTGTACAAATTTAG
- Protein Sequence
- MTTTKRNKLMKRNAVLVLEHSTVMPFKWHRQNYLCFYCHLTFKDTQLLKEHSRTEHRKANIKAAVAYLRRDEKVKIDISELKCRICDVNLSNLDDIIDHIKVAHCKNFNEEIGFGLIPYVLQNDLMHCAVCKEEFQYFVKLNQHMNEHFGNYIFCGKTFQIMSKMKVHLQEVHIREKKFSCSVCDQRFFSRTHVQKHMVKHFGEKVHQCEKKQPEVYHTFISPETQDIYLRFARAFVPYVKPRKYNGSESSSMRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKSHGDCSTRDHSLKVLKGGQNMEIKVDVSDINCEICAEPFPSFDEVITHLFVKHKLEYDRSVEMAVEEYRLIDLSCLVCDEKFTYFGYLVSHVNVNHPKNCLICDKCHQKFNKRRDLFSHMKNYHREGGYQCELCPQVFSSLNILRKHRNNRHLTRCNICHLRLPSAALKQKHIEIEHPDDGSLQCDSCFKEFHTKQGLRMHNRKCKGEGIFEIAIKKEEYVAMDLDQNYDDEVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVLEHPVCDIKQKCIRKCRESVACVKIDVSSLACKICFESMSDLDNLLDHLISKHDANYDKSITTCLQPYRLIKDHMACPNCPGEIFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMARAHGVKAAKCPKCPESFSTQYLRQKHLIEAHNCGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHINPVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -