Lfle016854.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989956.1:5257008-5265821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0006 0.042 14.7 6.9 1 23 224 247 224 247 0.97 2 12 0.014 0.97 10.4 1.3 1 23 256 278 256 278 0.89 3 12 7.2e-06 0.0005 20.8 2.6 2 23 285 306 284 306 0.97 4 12 2e-06 0.00014 22.6 1.5 1 23 312 334 312 334 0.97 5 12 0.0027 0.19 12.7 0.4 1 23 343 365 343 365 0.91 6 12 0.00067 0.046 14.6 0.6 2 23 372 393 371 393 0.94 7 12 0.00049 0.034 15.0 7.4 1 23 399 421 399 421 0.98 8 12 7e-09 4.9e-07 30.3 0.6 1 23 427 449 427 449 0.99 9 12 3.4e-05 0.0024 18.7 0.9 1 23 455 477 455 477 0.98 10 12 0.00012 0.0085 16.9 2.5 1 23 483 504 483 504 0.97 11 12 0.0068 0.47 11.4 1.3 1 23 510 532 510 532 0.94 12 12 1.9e-06 0.00013 22.6 4.5 1 23 538 560 538 560 0.99
Sequence Information
- Coding Sequence
- ATGGAGCCTGCAACTGCTCTCAAAAATGTTTCCAAAGAGGATAATATAACACAACAAGAAGAACCTACCTACATAGAAATAGAAATACCTTATAGGCTGTTCCAGTTTCTTAGCACAGAAAACTGTAATATACAAAATATATGTCGGATTTGTTTGTCAACAGAATGTGATGTATTATACTCACTTGTGTCTGCCAAAGAGAATAGTTTTTTATCTAATATATTTACGGCACTCACTAACGTGCAGTTATCACCTGAAGATGGGCTGCCATCAAGTATATGTGAGCTGTGTCAAACGGCTATCCTACAGTATTATGAGTTTAAACTCAAATGTGAGAAGTCAGAATGTATGCTGCGGTCTATTTTGAAAGGGGAGTTCATTACTAAAGATGAACCACCTGATGGTGAAATGCCAGTACAAGAAGAAAACCAAGATAATCATGACCAAAGTGAAGTCAAAGATGAAATGGAATTAGTTGAAGATGTGCAATATTTAGAAAATCTTAGTGATGATACCAATGATATGGATGACAAACTTTACATAGTACAAAATACTAATAAGAGTAAAAGAAAAGCAATAAAAGTGCCAAAAAGAGGTCCAAAATACTCTCGCAATAAATTAGCCAAAAATGTTCCAGAAAAGAAACAATCTGATTATAACACAAAATCCCACACATGTACACACTGTTCTAAGGTATTCACAAATGCGCAACAATTTAAAATGCACGTTAAAAAGAAACACGGTGTTAAATCCGAAAAGCGGCCTCATCCCTGTGATCAGTGTAAGGAGTCATTTGACTCTGAGCATGACCTTAGCGTGCATTCAGTTCTACACAGTAAAGGTATACCATTGAAATGCAACCAGTGTGAGAAAGAATTTAATTCAAAAACAACGCTCCGGCGTCATATCCAACGTCACATGGAGTCGAAACCGCACTCGTGTGAGACTTGTGGCAAAACGTTCACTGAACTGTACGCACTACGCAGGCACGTGCGCGTGCATACCGGCGAGCGTATTGAGAAGAAACACGCATGTCATATATGTGATAAAAGGTTCTCAGCGCGCGGCGTGCTCGCGACGCACGTGGCGGCGCACAGCGGCGCGCGGCCGTGCGAGTGCGCGCGCTGCGGCAAGCGCTTCGCGTCGCGCCGCCTGCTCGCCTCGCACGCGCTCGTGCACGACGACCACAAGCCCTACGCCTGCTCCTACTGCGACAAGCGTTTCCGTCATGAGTCCACTCGTAACACACATCACCGGACGCATACGGGTGAGAAGCCCTACGTGTGCTCCGTTTGCGGCAAGAACTTCATACAGAATTCTAATCTTACACTGCATATGCGTACACATACAGGCGAGCGTCCATATTCGTGCTCAGTATGCGAGCGCAAGTTCACTTCGGGCTCATCACTCAAGAGTCATGAACGTATACATACCGGAGAACGTCCCTACAGCTGTCATATTTGTGGGAAAAAGTTCGCGCGCATGAGCCTGCGCGTGCACATGCGCCAGCACACAGGTGAACGACCCTTCGCGTGTACGGCCTGTCCCAAGAAGTTTGTCAACGCCTCACGGTTGCGCGATCACTGCCGTATACATACAGGGGAGAAACCATACGAATGCGCCTATTGTACGTTCACATTCACAACGAAATCTCACCTAGTGAAACATATGAAGTCACATGATCCGCCGAAGAAGAAATCTGGGAAACAGGGCCTCGTCGTAGTACAACAAGTTCCTACCAATTCCCCAGCTATAACGGAGAACATTATTTACAAAAAGGGAGCTCAAGAACTAGCATCTATCTCTGAAAATACAGGAATAGACGAAGAGAAGATTGATATTGTAAAAGATATAACTTTAGATATACAAGAAGTTCCGCTAGAAGTGACTGGAGAACTGATTTTACAAGATGAAAGTGACATGAAAACAGATCTTTTAATAGTAGATAATAGTCAAAATAATTACCATTGTAATGATGTCTGTTTGAATGAACACATGAATATTGTGAATGAAGAAGTGAACTATAGTAATGATGTGAATCTCGTGACGGTGAATGAAGGAGGCGTGAGTATATCGGCGTCAACGCTCGAAGGAACGACGGTGAAATTGTACCAGTTGGACCAAAGTTTAGTTCAAATACATAGTTCTGGCGGTCAAGTCACTATAAGTAAGATCACTAGCAAAATGACCGCCAATTTTTAA
- Protein Sequence
- MEPATALKNVSKEDNITQQEEPTYIEIEIPYRLFQFLSTENCNIQNICRICLSTECDVLYSLVSAKENSFLSNIFTALTNVQLSPEDGLPSSICELCQTAILQYYEFKLKCEKSECMLRSILKGEFITKDEPPDGEMPVQEENQDNHDQSEVKDEMELVEDVQYLENLSDDTNDMDDKLYIVQNTNKSKRKAIKVPKRGPKYSRNKLAKNVPEKKQSDYNTKSHTCTHCSKVFTNAQQFKMHVKKKHGVKSEKRPHPCDQCKESFDSEHDLSVHSVLHSKGIPLKCNQCEKEFNSKTTLRRHIQRHMESKPHSCETCGKTFTELYALRRHVRVHTGERIEKKHACHICDKRFSARGVLATHVAAHSGARPCECARCGKRFASRRLLASHALVHDDHKPYACSYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKNFIQNSNLTLHMRTHTGERPYSCSVCERKFTSGSSLKSHERIHTGERPYSCHICGKKFARMSLRVHMRQHTGERPFACTACPKKFVNASRLRDHCRIHTGEKPYECAYCTFTFTTKSHLVKHMKSHDPPKKKSGKQGLVVVQQVPTNSPAITENIIYKKGAQELASISENTGIDEEKIDIVKDITLDIQEVPLEVTGELILQDESDMKTDLLIVDNSQNNYHCNDVCLNEHMNIVNEEVNYSNDVNLVTVNEGGVSISASTLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -