Lfle013701.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laspeyria flexula
Gene Symbol
-
Assembly
GCA_905147015.1
Location
LR989969.1:4001556-4011862[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5e-05 0.0034 18.1 7.4 1 23 195 217 195 217 0.97
2 13 2.3e-06 0.00016 22.3 0.2 3 23 231 251 230 251 0.98
3 13 4.6e-05 0.0032 18.3 2.2 2 23 260 281 260 281 0.98
4 13 0.00024 0.016 16.0 1.6 3 23 289 309 287 309 0.95
5 13 5e-06 0.00034 21.3 1.3 1 23 315 337 315 337 0.98
6 13 1.6e-05 0.0011 19.7 8.4 2 23 344 365 343 365 0.97
7 13 0.00018 0.012 16.4 1.4 1 23 371 393 371 393 0.97
8 13 1e-05 0.00073 20.3 1.6 1 23 399 421 399 421 0.99
9 13 8.8e-05 0.0061 17.4 1.2 1 23 427 449 427 449 0.99
10 13 0.00015 0.011 16.6 1.2 1 23 455 477 455 477 0.97
11 13 1.9e-05 0.0013 19.5 1.2 1 23 483 505 483 505 0.97
12 13 2.2e-06 0.00015 22.4 0.7 1 23 511 533 511 533 0.99
13 13 8.3e-05 0.0058 17.4 3.4 1 23 607 629 607 629 0.99

Sequence Information

Coding Sequence
ATGGCTGCTTCTGCTATTGCCAATAAATTACAAACTTTAAAATTCGAGAAAATATGTCGAGCGTGTTTGGAAACAAAAAAGGATATGAGACCTCTATTCGAGCAGCTGACTGCGACAATGCTGATGGGCATTTCCAAAGTGCAGGTAACAGTAGGGGACGGACTACCTTCCCAACTGTGTCTGCAATGCGTTCATCAGATATCGCGCTATCATGCGTTCAAAGAGATGGTCGAGAGACACGACATCGCACTCCGGGAACACGCTAAGGTCCTCGCTGAGCAGGCCCTCAAGAGGGAGAGAGAAGAGAAAGAGAAACTGCTAAACATGAACTGCACGGAGCCATATATAGAATACATGGAAGTGCCCATTACGAACCCCAATCAGATCCTTGAAGGGTTCTTTAACGGAACTTCCGAACAAGCATCTACGCCTGCGTCCGGTCAAGACGGCAAGGATGACTACGGAAATGTTAAGCATGAACTGATCTCTGTACCCAAAGATAAAGATGGTCTAAATTCGGACGAGGAGACTTATCTACAGCTGGTAGTGTACCAAGCGACGTCGACAGTGTCCCCTGGGCGACATATGTGCAACCTCTGTCACAAGGAGTTCAAACACCCGCGCTGGTTGAAGCAGCACATGAGGTCACACTCTAACTGGATAAAAGCTAACTGCAAGAAGCCACCCATGTGTCCTATTTGTGAGAGAACTTTTAAGGGTCCGGGCATGTTAAAGATGCACATGCGTACTCACGAGAAGCGTCCACCAAAACAGCCAACTTGTTCGGTGTGCCAACGGACGTTCGCGACCAAGACGTTACTTTACCGACACAGACAGACGCACTTCGAGCAGAAGACCCACCTGTGCACGGTGTGTGACAAGAGGTTCTACAGCGGCTACGCGCTCCGCTCTCACATGGCCAGGCATCGCGGCGAAAGACCTTATGTATGCTCTAATTGCAACAAAAGCTTCTACAACCCTACGGATTTAAAGGTACATTTCCGTCTCCACACCGGCGAGAAGCCACTAAAATGTTCAGAATGTAACAAGACGTTCCGTCGCCACTCGACATTGTGCCAACATATGAAGAAACACCGCGGCATACGGAACCACATCTGTGCTGTGTGCCACAAAGGTTTCTACGAGGTGTCCAAACTTAACGCACATATGAGAGTGCACACGGGTGAGCGACCCTACGAGTGCCAGTTCTGTTCGCGTCGGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACACCTGCAAGCTGTGCTCCGCGCGCTTCACCACCTCGTCCGCCAGGAACAACCACATGATCACGCACACGGGGAATAAGCGGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCACGTCGCGCTCGGAGCTGCGCGTGCACGCCAGCAAGCACAGCGGAGAGAAACTGTTCGCGTGCGCGCACTGCGACCAGCGCTTCAGCTCCGCGTCCTACCTCGCCGTGCACCGCCGCTACCACACCGGCGAGCTCAAGTACCAGTGCGCCGTCTGCGGGAAGGGTTATATAGAATCCAGTTCGTACAAGAAACATATGAAGACGCACCAAGTAAAGCCGGACACAGAGTCGTCGAATGAGAACAGCGCGGAGAGTTCGAGCAAGAACGAAGCGCAACAGTCCGGCGCTAGCGACGACCAGGAGCAGGTGCAGCATCAAGTGCAAGTACAGTCTCAGCCTCAAGTTCAGATCCAAGTTCAAGCCGGTGAGCAAGTGTTGCAAGTACAATCTCAAGGGCAGACAGAGGGCGACCCTCTACAGAAGCGGTACAAGTGCGGATTCTGCGTCAAGACCTACATATATCTACACAATCTTAAGAAACATATGCAAATACATGCATCTGTGCAGGTGCAACAGCAACAAGTGCAACAGAATCACCAACAACAGCAGATGCAGCAACAGGCGGTGCTGCAAGTTGGCAACGTGCAACATCAGCTTGCCGTCCCGATACATGCGCAACATGTACAACAGGGCATCACTGTCTCCGGAGTTCAGGGCCAGCACCCTTACCCCGTGATCTCGTCGGTGCAGTCGCTACAGCTGCAACAAACACAACAACAGGTTAACCAACAGCCGCAGCAACTGCAAGTACAAACGATACAGCTACACCCACAACACCAACCTATACAAATACATGCGGTGGGTGTGCAGCAAGTACAACAACAACAGTTACACGTGGCCACCTCCACGTGTCAGACCATGCTGCCCAACATACTACAGCTACAACCTGCGACGGTGGCGGTGTCAGGTCTGAGCCAGCAGGAGCTGGGCGGCGTGACGCACCGCATTATTCTGCAGCCGCAACCCTCCGGCACCCACCCCGCTGTATACACCATACATCACTGA
Protein Sequence
MAASAIANKLQTLKFEKICRACLETKKDMRPLFEQLTATMLMGISKVQVTVGDGLPSQLCLQCVHQISRYHAFKEMVERHDIALREHAKVLAEQALKREREEKEKLLNMNCTEPYIEYMEVPITNPNQILEGFFNGTSEQASTPASGQDGKDDYGNVKHELISVPKDKDGLNSDEETYLQLVVYQATSTVSPGRHMCNLCHKEFKHPRWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEKRPPKQPTCSVCQRTFATKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSNCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHICAVCHKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYTCKLCSARFTTSSARNNHMITHTGNKRFVCPVCFKGCTSRSELRVHASKHSGEKLFACAHCDQRFSSASYLAVHRRYHTGELKYQCAVCGKGYIESSSYKKHMKTHQVKPDTESSNENSAESSSKNEAQQSGASDDQEQVQHQVQVQSQPQVQIQVQAGEQVLQVQSQGQTEGDPLQKRYKCGFCVKTYIYLHNLKKHMQIHASVQVQQQQVQQNHQQQQMQQQAVLQVGNVQHQLAVPIHAQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQQVNQQPQQLQVQTIQLHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSGTHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-