Lfle012510.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989963.1:12550980-12556146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0065 0.45 11.5 3.7 1 23 130 152 130 152 0.98 2 13 7.4e-05 0.0051 17.6 3.0 1 23 156 178 156 178 0.97 3 13 0.0051 0.35 11.8 0.3 1 23 181 203 181 203 0.95 4 13 5.6e-06 0.00039 21.1 1.4 2 23 221 242 220 242 0.97 5 13 7.4e-06 0.00051 20.8 1.4 1 23 249 271 249 271 0.95 6 13 1.1e-05 0.00074 20.2 5.8 1 23 277 299 277 299 0.99 7 13 1.2e-05 0.00083 20.1 2.9 1 23 305 327 305 327 0.99 8 13 2.1e-08 1.4e-06 28.8 0.9 1 23 333 355 333 355 0.96 9 13 2e-06 0.00014 22.5 2.1 1 23 361 383 361 383 0.98 10 13 2.7e-06 0.00018 22.1 1.0 1 23 389 411 389 411 0.98 11 13 0.017 1.2 10.1 5.6 1 23 417 439 417 439 0.97 12 13 1.5e-06 0.00011 22.9 1.0 1 23 445 467 445 467 0.98 13 13 0.00026 0.018 15.9 0.3 1 20 473 492 473 495 0.94
Sequence Information
- Coding Sequence
- ATGTTAGACATTACCGCATCTTGTCGAACGTGTATGAAAGATAATGTGACTTTGGTGGACTTATATGAAATAGTTAAAATTGAAGAAAATTGTCTTCAATTAGCCGAGTTACTGGTGCTGTGTACTTCAACACAGGTGTCCAAAGAAGATGGGTTGCCTCAACAACTTTGTGATGAGTGCGCAAAAATCGTACAAATGGCATACGTATTCCGTAACCAGGCGGAGAAAGCGCAAGAACAGTTCAAAAAGCTCTTACAGAGTGAAATAAAACTTGAGCCATCAGATTTCCAACCAAAGACAGAGAATGAACATGAATATTTAGAATTTGAGTTTAATCTCGACGATGATTACTCTAACTCGAAAACTGAAGAGATTGAAGATAACAATTACACATGTAGCAAATGTAAAAAAACATTTTTAAAAGAGAAGAGTTTTTTAAAACATCTACAGGTTCATGAATCACCTTATCAATGTACTGTTTGTAACAAGACATATCGTAATCAGACTTCACTAGACAAACATTCAACAAAACACAGGAAACATACATGTGCTGTGTGTAATCAAAGCTTTCCGACTGAACAACTTGTTACAGAACATATGGTTGAACACACTGAAAATACCCAAGTAAAAATTGAAAATGAAGCACAGGTTACTTTACTACAATGCCCAGATTGTGACTTAACTTTTACAAAACAGAGGTCATTATCTATGCACAGGAGGAGGCATAAAAATTCCAATTCTGAATTTATTTGTGATACCTGCGGAAAAGTTTTTAATATGAAACATCAGTTGAAAAGGCATGTGGCTCTACACAGTGAAGTAAAACCTTATAAGTGTACAAAGTGTTCTAAAAGATATGTGAGGAAAGACCAGCTGATGCATCATATGTACACACATAAAGATAGCAAGCCTTATGAATGTTCATATTGCAAGAAAGGTTTTGTCCAGCTATGCAGTTTGAAGGACCATATCCGGAGCCATACTGGTGAAACTCCGTACTTGTGCTCGGAGTGCGGGAAGGGCTTTACGAATAGTTCTAATTTGAGACAACACATGATGCGGCATACCGGCTTGAAGCCTTACGCTTGTAATATGTGTCCTAAGACGTTTTGTACCAAAGGACAAATGACATCGCACATGGCCACCCACACCGGTGAACATCCATACAAGTGTGAGGAGTGTGGCGCCACCTTCACTAAACAGAACTCTTTGAAGAAACATTCCATGATACACTTGGGTTTACGGCCTTTCGCTTGTGACACTTGTGCAATGAGGTTTACGTGCAAAGATCACCTGAAGCGTCACTACCGTATCCACACCGGCGAGAAGCCGTACCGCTGCAACTATTGCGAGCGCGCCTTCTCGCAGAGCAACGATCTCGTCAAGCACACGCGGGCCCACGTCGGACAGAATATATACCAGTGCACAATATGCGGGATGCGATTCAGACTCGTATCAGAACTGAAGAGTCACTACCCCGTCCATTTTGTGGACGGTAAGATGCAACCAGTCGACACCAAAGAAGATTCACTTTTAAAACCACCTTCCACCAAGGAATTGGAACCAATGCTTGTACTCAAACCACCAGAAATACCCATAATATCGTTTAACCATAAAGACTTACCGATAATATCTTTAAAGCCAACGGTAGAAAACGATTTGCCGATATTATCTTTGAAACCAACGGCGTCGGATACCTTTGATACGATTACAGAGTTGACAACGCAAGATGATAAGAATAGATATACTATAACTATAAATAGTTGTGATAAAAATGGTCTAGTTAATGGTATTACGATTAATATACCGCCTAAAGAGAGCTAA
- Protein Sequence
- MLDITASCRTCMKDNVTLVDLYEIVKIEENCLQLAELLVLCTSTQVSKEDGLPQQLCDECAKIVQMAYVFRNQAEKAQEQFKKLLQSEIKLEPSDFQPKTENEHEYLEFEFNLDDDYSNSKTEEIEDNNYTCSKCKKTFLKEKSFLKHLQVHESPYQCTVCNKTYRNQTSLDKHSTKHRKHTCAVCNQSFPTEQLVTEHMVEHTENTQVKIENEAQVTLLQCPDCDLTFTKQRSLSMHRRRHKNSNSEFICDTCGKVFNMKHQLKRHVALHSEVKPYKCTKCSKRYVRKDQLMHHMYTHKDSKPYECSYCKKGFVQLCSLKDHIRSHTGETPYLCSECGKGFTNSSNLRQHMMRHTGLKPYACNMCPKTFCTKGQMTSHMATHTGEHPYKCEECGATFTKQNSLKKHSMIHLGLRPFACDTCAMRFTCKDHLKRHYRIHTGEKPYRCNYCERAFSQSNDLVKHTRAHVGQNIYQCTICGMRFRLVSELKSHYPVHFVDGKMQPVDTKEDSLLKPPSTKELEPMLVLKPPEIPIISFNHKDLPIISLKPTVENDLPILSLKPTASDTFDTITELTTQDDKNRYTITINSCDKNGLVNGITINIPPKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -